mRNA_Ecto-sp13_S_contig19409.6228.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19409.6228.1
Unique NamemRNA_Ecto-sp13_S_contig19409.6228.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19409.6228.1 vs. uniprot
Match: D7FJL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.410e-12
Identity = 37/56 (66.07%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  214 PPCVPDQEATHAAASIDFEGKCYDEE-----KLLSFGDAESFLTLNKPGI*DVSSM 366
            P C  DQ  THAAAS DFEG+CYDEE     KLLSF DAESFL  N PG+ DV SM
Sbjct: 1026 PSCAADQGTTHAAASSDFEGRCYDEEVAKSKKLLSFEDAESFLAKNLPGVEDVYSM 1081
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BLAST of mRNA_Ecto-sp13_S_contig19409.6228.1 vs. uniprot
Match: D7FUD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD8_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.090e-8
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  214 PPCVPDQEATHAAASIDFEGKCYDEE-----KLLSFGDAESFLTLNKPGI*DVSSM 366
            P  V DQ ATHAAAS D EG+CYD+E     KLLS  +AESFL LN PG+  V SM
Sbjct: 1070 PSGVSDQGATHAAASTDSEGRCYDKEVALSKKLLSLKEAESFLALNVPGVEGVYSM 1125
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BLAST of mRNA_Ecto-sp13_S_contig19409.6228.1 vs. uniprot
Match: A0A6H5KM07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM07_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.250e-6
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 3 
Query:    3 GFVKGVASPEPHPRQGEGGGVKFLKFTPHE 92
            GFVK VA PEPH RQ EG GVKFLKFTPHE
Sbjct:  125 GFVKEVAYPEPHARQEEGAGVKFLKFTPHE 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19409.6228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJL7_ECTSI3.410e-1266.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUD8_ECTSI1.090e-860.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM07_9PHAE2.250e-683.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19409contigEcto-sp13_S_contig19409:2427..3166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size369
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462985.2939498-UTR-Ecto-sp13_S_contig19409:2426..24441681462985.2939498-UTR-Ecto-sp13_S_contig19409:2426..2444Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19409 2427..2444 -
1681462985.3731499-UTR-Ecto-sp13_S_contig19409:3079..31661681462985.3731499-UTR-Ecto-sp13_S_contig19409:3079..3166Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19409 3080..3166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462985.3111334-CDS-Ecto-sp13_S_contig19409:2444..25041681462985.3111334-CDS-Ecto-sp13_S_contig19409:2444..2504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19409 2445..2504 -
1681462985.3298004-CDS-Ecto-sp13_S_contig19409:2875..30791681462985.3298004-CDS-Ecto-sp13_S_contig19409:2875..3079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19409 2876..3079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19409.6228.1prot_Ecto-sp13_S_contig19409.6228.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19409 2445..3079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19409.6228.1

>prot_Ecto-sp13_S_contig19409.6228.1 ID=prot_Ecto-sp13_S_contig19409.6228.1|Name=mRNA_Ecto-sp13_S_contig19409.6228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MSRGRRGSGRRRKRRKGRRRRDRTGRKRRRKGCTAGLLRLRHPPCVPDQE
ATHAAASIDFEGKCYDEEKLLSFGDAESFLTLNKPGI*
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mRNA from alignment at Ecto-sp13_S_contig19409:2427..3166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19409.6228.1 ID=mRNA_Ecto-sp13_S_contig19409.6228.1|Name=mRNA_Ecto-sp13_S_contig19409.6228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19409:2427..3166- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGTTCGTGAAGGGGGTGGCCTCTCCCGAGCCGCACCCTCGCCAAGGG
GAGGGGGGAGGCGTTAAGTTCCTCAAATTCACGCCGCATGAGTAGAGGGA
GGAGAGGGAGTGGACGAAGAAGAAAGAGGAGGAAAGGAAGGAGAAGGAGG
GACAGAACGGGAAGGAAGAGGAGACGAAAAGGGTGCACGGCAGGCCTGCT
TCGCCTCCGGCACCCTCCCTGTGTTCCCGACCAGGAAGCGACCCACGCTG
CCGCCTCAATTGATTTCGAGGGAAAATGCTACGACGAGGAGGTATGTAGG
AGAAGTAGCGGCACCGGCGTTCTCAAAGTTTAAACGCAACCCCCGAAGCA
CTTCGCGCGTGTTGTTCTCTGGCAAGTGAGGTTCGGAGGCAATTCCGGAC
ATCTTATTGTACTGCGCCCTGCCTACCCCACCCGCGTCCCCGCTCAGGGC
AAACAGCATACATCCCTCCAAGCTCTCAATGCTTCACGTGTTGTTTTGAC
TTGTGAGGGTCACTCCATGGTAGGTCGTCGTGATGCCTTAGGGAGTGCCG
CTTGCAGCAAGCGGCATGAGCTTGCTCCCCAATCTGAGACTTTGGTTTTT
ACCTTGTTCCTGGTAACCCTTGCCCTCTCTTCATTCCTTCCTTCCGGGTG
GCGTTGTCCTAGAAGCTACTGTCCTTCGGGGACGCCGAGTCGTTCTTGAC
CTTGAACAAGCCCGGCATCTAGGACGTGTCCTCGATGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19409:2427..3166-

>mRNA_Ecto-sp13_S_contig19409.6228.1 ID=mRNA_Ecto-sp13_S_contig19409.6228.1|Name=mRNA_Ecto-sp13_S_contig19409.6228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19409:2427..3166- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTAGAGGGAGGAGAGGGAGTGGACGAAGAAGAAAGAGGAGGAAAGG
AAGGAGAAGGAGGGACAGAACGGGAAGGAAGAGGAGACGAAAAGGGTGCA
CGGCAGGCCTGCTTCGCCTCCGGCACCCTCCCTGTGTTCCCGACCAGGAA
GCGACCCACGCTGCCGCCTCAATTGATTTCGAGGGAAAATGCTACGACGA
GGAGAAGCTACTGTCCTTCGGGGACGCCGAGTCGTTCTTGACCTTGAACA
AGCCCGGCATCTAG
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