mRNA_Ecto-sp13_S_contig19409.6227.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19409.6227.1
Unique NamemRNA_Ecto-sp13_S_contig19409.6227.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19409.6227.1 vs. uniprot
Match: D7FJL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 6.420e-22
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:  157 SRGGKEGTLHAKLCKGIVLAARIAATVFQTPSAKPEALDGFATVSTYTEGDVFDLRPCEFLGVCVDVVAD 366
            S G +EG+LHA L KG+VLA RIAATV++TPSA PE+LDGFATVS YT GD+FDLRP E LG+ VD+VAD
Sbjct: 1181 SEGNQEGSLHAPLFKGMVLATRIAATVYKTPSAGPESLDGFATVSEYTNGDMFDLRPGEPLGIRVDLVAD 1250
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BLAST of mRNA_Ecto-sp13_S_contig19409.6227.1 vs. uniprot
Match: A0A6H5KW95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW95_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.990e-21
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:  157 SRGGKEGTLHAKLCKGIVLAARIAATVFQTPSAKPEALDGFATVSTYTEGDVFDLRPCEFLGVCVDVVAD 366
            S G + G LHA L KG+VLA RIAATV++TPSA+PE+LDGFATVS YT GD+FDLRP E LG+ VD+VAD
Sbjct:  877 SEGRQAGNLHAPLFKGMVLATRIAATVYKTPSARPESLDGFATVSEYTNGDMFDLRPGEPLGIRVDLVAD 946
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BLAST of mRNA_Ecto-sp13_S_contig19409.6227.1 vs. uniprot
Match: D7FUD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.360e-19
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:  154 RSRGGKEGTLHAKLCKGIVLAARIAATVFQTPSAKPEALDGFATVSTYTEGDVFDLRPCEFLGVCVDVVAD 366
            R+    EGT +A L KG+VLA RIAA VF+ PSA PE +DGFATVS YT GD+FDLRPCEFLGV   +VA+
Sbjct: 1223 RTERRHEGTFNAPLFKGMVLATRIAAMVFKVPSATPEIVDGFATVSNYTTGDMFDLRPCEFLGVRAGLVAE 1293
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19409.6227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJL7_ECTSI6.420e-2271.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW95_9PHAE2.990e-2170.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD8_ECTSI4.360e-1964.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19409contigEcto-sp13_S_contig19409:155..2324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size368
Hectar predicted targeting categoryother localisation
Exons3
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462985.2426138-CDS-Ecto-sp13_S_contig19409:154..2501681462985.2426138-CDS-Ecto-sp13_S_contig19409:154..250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19409 155..250 -
1681462985.253249-CDS-Ecto-sp13_S_contig19409:1102..12951681462985.253249-CDS-Ecto-sp13_S_contig19409:1102..1295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19409 1103..1295 -
1681462985.2676334-CDS-Ecto-sp13_S_contig19409:2247..23241681462985.2676334-CDS-Ecto-sp13_S_contig19409:2247..2324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19409 2248..2324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19409.6227.1prot_Ecto-sp13_S_contig19409.6227.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19409 155..2324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19409.6227.1

>prot_Ecto-sp13_S_contig19409.6227.1 ID=prot_Ecto-sp13_S_contig19409.6227.1|Name=mRNA_Ecto-sp13_S_contig19409.6227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
SKTFSPVTGLLAGVAVPTTRCCWKRRCFLASRRSTSSTRIWWVPLYAISR
NRSRGGKEGTLHAKLCKGIVLAARIAATVFQTPSAKPEALDGFATVSTYT
EGDVFDLRPCEFLGVCVDVVAD
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mRNA from alignment at Ecto-sp13_S_contig19409:155..2324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19409.6227.1 ID=mRNA_Ecto-sp13_S_contig19409.6227.1|Name=mRNA_Ecto-sp13_S_contig19409.6227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19409:155..2324- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAAGACATTCTCACCCGTTACAGGGCTGTTAGCCGGTGTAGCCGTGCC
TACCACGCGCTGTTGTTGGAAACGAAGGTGTGCTCTGAATCTTTCACCGT
AAACATGAAATTTGCGAAAAGGTGGGCCAGTTGGGCGGTTCGCCGAGCGT
ACTTTGTATTCACTTCTTTCTTAACTCCGTCTAACTTGTCTCAGCTAAAT
GAAAATCCGACTTAGCATGGTCCTTGCAGAGCATTGGGGCGAGCGACGGC
AATATCGTGCAATGTACCCTGTCATGACCGACGGAATTGCTTCCGTACTG
TGACATGGATCGTTGACATCGGGTTTCGTAATGCTGAACAGCATTTGTAC
GGGTCTTGAGGTAGCTGGTTGTGAGGTATGTTTGTTACCAGTCTCTACGT
AGCGTTTCGGCGCGTGTTAATTTGCATTGACCCACCTCCGCTCACTACTC
TTGTGTCCGATGTATAGTACATGAACCGCCGTCATGGGTCTACTCAGTAA
TCGCTTACGACAGATTTTTGTGTCACTGGAAAATTGACACTTTCTCGTGT
GGATGATATGATGTTTGGTTGACGTGGGAATGGCGACGTACATCCTCACG
AGGGAAGAAGTTGGTACTAGCATCGCGTTCCCAGTTTCTCGCACTCGCTG
CCATCCTGAAATACGAAACTCGCTGGTCCCTCAGAAAGAGATTCCGTGGT
TCTTCGGTCGGGCAGGTGATACTAGGTTTGCACCATAATGTAGGTGGGAC
GCCAACCCCTTGGTGCGAGCGATTTCCCGCGTCGCCTTTGGGTTTGGCAA
CGAGCACGCATGAGAGGCAGTGGACCCTTTCCTTCATCATGATATCCTGC
AAACACATCCCAGAGTGATAAAACGTCTCTGCGTCGTCTCGAACCGGGAA
ACATGCAGGTCCTCCTGTACAAGGTTCCCTAGTACGTTGTCAAACATTTG
TATCATCCTTCTCGTCTCTTTTTTCTCCGTCGTTAATCCCTCAAAGGAGA
AAGTGAACACGTTCGTTTTCTTCGTGGAGGTGCTTCTTGGCTTCAAGACG
ATCGACATCTTCAACCAGGATCTGGTGGGTACCCTTGTACGCCATCTCTC
GGAACCGTTCGAGGGGAGGCAAGGAAGGCACTCTCCACGCGAAGTTGTGC
AAGGGCATAGTCCTGGCGGCCAGAATCGCAGCCACGGTCTTTCAGACGCC
GTCAGCCAAGCCCGAGGCCTTGGTGAGTGAGGAACACGGTCCCGATTATT
TATGGTTTTGATGTTGTCCAGTCGTTGTCTTTTCGTTTGAGAATATGTCG
CAGACCTTGCACTACTGTCACGATGTTTACATTTCCAACCCTCTAAACCC
TAAGGTAATTTCGAGCAGGAGCGCCTTGGAGAGGGGCTGATTCGTGGTCT
CTGAGCAACATGTTCCTCACCACGGCCGCAATGCACCAAGTGTTTTGAGA
GCGATGTGGAAAACCCTCGCAAGCGGCAGTCCGAATCATCTGATTTCAAT
GCCGACTCGAATAGCTATATCGAAGGGCAACTGCACCCACCAGTCTTCGT
TTACGGCCTGTTGCCACAAATCTGAAATACCTGCAACGCTCGATCGTTAG
ATCGCTCTGTATCTCGAACCCCTGGACACAGGCAAAGAGTTTGCCTACCC
ACTTTCCAACATCGTGGCTGTCTATTTTTGTCCGAAACGTACTGCGTACA
ACCCAATTGGCGATTTTCCAATCGCTGGTCAATAACGCACAAATCAACCT
TGGCGCTCATACACTTAGTCTTTGCTGGCACGGACACGCATGCTGTGATG
GTTTCCCGCATCATGTCCCTGTGAGGGCCGTGGGTGAACTCCTTTGGAAC
ACAACCCGGAGTCACACCTCGACACTTCTGTGGGGGGGACTAAGAGGACC
CAAGCAACCGAGAGTGCATTGCACTACTGGAACAGAAGCGCTGTCACTGC
CATCCTTGTACTTCATGCCAATGTCTGGAGACCGAAGAAGTTGGACAGGT
CGCATGCTTGAACACCCGTATTCTCGGATCCTTACACCACGTACCCTTGT
TCGTGAAAACCACTTTTTTCCTAGGACGGTTTCGCCACGGTGTCAACCTA
CACCGAAGGTGACGTGTTCGACCTGAGGCCTTGCGAATTTCTGGGGGTTT
GCGTCGACGTTGTGGCTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19409:155..2324-

>mRNA_Ecto-sp13_S_contig19409.6227.1 ID=mRNA_Ecto-sp13_S_contig19409.6227.1|Name=mRNA_Ecto-sp13_S_contig19409.6227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19409:155..2324- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAAGACATTCTCACCCGTTACAGGGCTGTTAGCCGGTGTAGCCGTGCC
TACCACGCGCTGTTGTTGGAAACGAAGGTGCTTCTTGGCTTCAAGACGAT
CGACATCTTCAACCAGGATCTGGTGGGTACCCTTGTACGCCATCTCTCGG
AACCGTTCGAGGGGAGGCAAGGAAGGCACTCTCCACGCGAAGTTGTGCAA
GGGCATAGTCCTGGCGGCCAGAATCGCAGCCACGGTCTTTCAGACGCCGT
CAGCCAAGCCCGAGGCCTTGGACGGTTTCGCCACGGTGTCAACCTACACC
GAAGGTGACGTGTTCGACCTGAGGCCTTGCGAATTTCTGGGGGTTTGCGT
CGACGTTGTGGCTGAT
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