mRNA_Ecto-sp13_S_contig19397.6219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 238 bits (608), Expect = 4.930e-70 Identity = 139/155 (89.68%), Postives = 139/155 (89.68%), Query Frame = 2
Query: 11 AGSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSAS-SPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXX------GHLPPPCLSWG 454
AGSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSAS SPSLSS RG AVGGP PGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXX GHLPPPCLSWG
Sbjct: 535 AGSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASPSPSLSSXXXXXXRRGVAVGGPGPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXXXXXXXGHLPPPCLSWG 689
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI) HSP 1 Score: 231 bits (590), Expect = 1.280e-67 Identity = 126/147 (85.71%), Postives = 127/147 (86.39%), Query Frame = 2
Query: 17 SSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGG-LRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXGHLPPPCLSWG 454
SSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASS LRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLF+GXXXXXXXXX GH PPPCLSWG
Sbjct: 560 SSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFTGXXXXXXXXX-------GHFPPPCLSWG 699
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A835YZH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH2_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.920e-22 Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 2
Query: 20 SDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASS--PSLSSFGGGGGLRG--GAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPR 355
S+PA ITAD GVV+K+ FRRVMWT WV +T CLLDGAAG + ++ VL W SS PS+ G GG R AV AP F +MAMSS NTF+V I P+VKVI+KW R
Sbjct: 1245 SEPAVITADAAGVVNKVAFRRVMWTAWVAETACLLDGAAGCMLSVDVLRGWAGVFSSAVPSVEEQGAGGAARPPEDAV---AP-FEATRLMAMSSATNTFVVSIDPQVKVIYKWGR 1356
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A7S4HPF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPF7_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 8.240e-13 Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 2
Query: 35 ITADVEGVVSKMCFRRVM-WTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGGLRGG--AVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRP 358
+T D G+V+K+ F +VM + + VDTECLLDG AG I A+ VLP + SS L G + GG ++ G P L ++A+SS +++F V + P+V V+H+W RP
Sbjct: 192 VTVDAGGLVNKLTFSKVMLFNAYSVDTECLLDGTAGQILAMHVLPPF----SSVKLPPPPAGSQITGGDSSLAGYHPSIRRLSLIALSSERSSFAVAVEPQVNVLHRWSRP 298
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A1Z5K8H4_FISSO (Vps8 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8H4_FISSO) HSP 1 Score: 74.3 bits (181), Expect = 1.380e-12 Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 2
Query: 20 SDPAAITADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTW----TDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXGHLPPPCLSWG 454
SD +T DV G+V+K+ F + ++W+ + VDTECLLDG AG I A+ VLP + T L+ LR L ++A+SS +++F V + P++ V+H+W RPP + LP CLSWG
Sbjct: 422 SDWKVVTVDVGGIVNKISFTKNMLWSNYSVDTECLLDGTAGQILAMNVLPPYGTIKTQQLRPDPLTDM-----LR------------KLTLIALSSERSSFAVAVEPQINVLHRWARPP--AEKTDDVSINTSNNPVQSEFLP--CLSWG 550
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: B7FQM2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQM2_PHATC) HSP 1 Score: 71.6 bits (174), Expect = 1.200e-11 Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 2
Query: 32 AITADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXGHLPPPCLSWG 454
A+T D G+V+K+ F + ++W+ + D +CLLDG AG I ++ VLP + + +P L LRG + ++A+SS +++F+V + P V V+H+W RPP H PCL+WG
Sbjct: 440 AVTVDAGGLVNKVAFVKNILWSTYSTDIDCLLDGTAGQILSMNVLPPY--AMVNPQLRPENLASVLRG------------MNLIALSSERSSFVVAVDPTVNVLHRWARPP-----QEDLNESKVDDHEREVHAHMPCLAWG 562
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A7S4ALZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALZ4_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.380e-10 Identity = 49/154 (31.82%), Postives = 72/154 (46.75%), Query Frame = 2
Query: 35 ITADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTW-----------TDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXGHLPP--PCLSWG 454
+TAD G+V+K+ F + ++W+ + V+TECLLDG AG I A+ VLP + + + SS G LR L ++A+SS +N+F V + P V V+H+W +P G P PCLSWG
Sbjct: 1 VTADASGLVNKLNFSKNMLWSTYGVETECLLDGTAGQILAVDVLPPYEYIKQQLQLQQNQQQNKANPSSEGAAKKLR--------STMKKLVLIALSSERNSFAVAVEPTVHVLHRWLKP----------DQDRIEGKQKQGSEPVYLPCLSWG 136
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A7S2NXR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXR9_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.270e-9 Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 2
Query: 23 DPAAITADVEGVVSKMCFRR-VMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPR 355
+ + I+ D G+V K+ F + VMW + VD+ECLLDG AG I ++ +LP + SPS +L ++A+SS +++F V + P V V+H+W R
Sbjct: 83 ETSIISVDASGLVYKLNFSKAVMWANYSVDSECLLDGTAGQILSMHILPPLSSLKLSPSAIE---------------KHCCRNLSLIALSSERSSFAVAVEPSVNVLHRWAR 179
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A1E7FY24_9STRA (Vps8 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY24_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 3.080e-9 Identity = 44/143 (30.77%), Postives = 66/143 (46.15%), Query Frame = 2
Query: 35 ITADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKW--PRPPLFSGXXXXXXXXXXXXXXXXGHLPPPCLSWG 454
+T D G+V+K+ F + ++W+ + V++ECLLDG AG I AL VLP + + G L ++A+SS +N+F+V + P V V+H+W P P G PCLSWG
Sbjct: 308 VTVDAGGLVNKLNFSKNMLWSTYSVESECLLDGTAGQILALNVLPPYQYVKQQLIQQASNNGNTAAAVQTKSLRSTMKKLVLIALSSERNSFVVAVEPSVHVLHRWLKPEPERIVGIARRQNQKERQAQVYL-----PCLSWG 445
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A7S1TXF0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXF0_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 2.460e-7 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 2
Query: 23 DPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVL 163
DP AI+ D G V+++ F + ++ W ++ECLLDGAAGPIP L +L
Sbjct: 66 DPVAISVDTRGCVNRITFTKSLFATWAHESECLLDGAAGPIPMLALL 112 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19397.6219.1 >prot_Ecto-sp13_S_contig19397.6219.1 ID=prot_Ecto-sp13_S_contig19397.6219.1|Name=mRNA_Ecto-sp13_S_contig19397.6219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp GRFGGQLRPCGYHGGRGGGGEQDVLSESDVDEMGRRHGVLVGRSRWPDSRback to top mRNA from alignment at Ecto-sp13_S_contig19397:982..3125+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19397.6219.1 ID=mRNA_Ecto-sp13_S_contig19397.6219.1|Name=mRNA_Ecto-sp13_S_contig19397.6219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19397:982..3125+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19397:982..3125+ >mRNA_Ecto-sp13_S_contig19397.6219.1 ID=mRNA_Ecto-sp13_S_contig19397.6219.1|Name=mRNA_Ecto-sp13_S_contig19397.6219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19397:982..3125+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |