mRNA_Ecto-sp13_S_contig19397.6219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19397.6219.1
Unique NamemRNA_Ecto-sp13_S_contig19397.6219.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 4.930e-70
Identity = 139/155 (89.68%), Postives = 139/155 (89.68%), Query Frame = 2
Query:   11 AGSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSAS-SPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXX------GHLPPPCLSWG 454
            AGSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSAS SPSLSS       RG AVGGP PGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXX      GHLPPPCLSWG
Sbjct:  535 AGSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASPSPSLSSXXXXXXRRGVAVGGPGPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXXXXXXXGHLPPPCLSWG 689          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.280e-67
Identity = 126/147 (85.71%), Postives = 127/147 (86.39%), Query Frame = 2
Query:   17 SSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGG-LRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXGHLPPPCLSWG 454
            SSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASS            LRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLF+GXXXXXXXXX       GH PPPCLSWG
Sbjct:  560 SSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFTGXXXXXXXXX-------GHFPPPCLSWG 699          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A835YZH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.920e-22
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 2
Query:   20 SDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASS--PSLSSFGGGGGLRG--GAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPR 355
            S+PA ITAD  GVV+K+ FRRVMWT WV +T CLLDGAAG + ++ VL  W    SS  PS+   G GG  R    AV   AP F    +MAMSS  NTF+V I P+VKVI+KW R
Sbjct: 1245 SEPAVITADAAGVVNKVAFRRVMWTAWVAETACLLDGAAGCMLSVDVLRGWAGVFSSAVPSVEEQGAGGAARPPEDAV---AP-FEATRLMAMSSATNTFVVSIDPQVKVIYKWGR 1356          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A7S4HPF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPF7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 8.240e-13
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 2
Query:   35 ITADVEGVVSKMCFRRVM-WTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGGLRGG--AVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRP 358
            +T D  G+V+K+ F +VM +  + VDTECLLDG AG I A+ VLP +    SS  L     G  + GG  ++ G  P    L ++A+SS +++F V + P+V V+H+W RP
Sbjct:  192 VTVDAGGLVNKLTFSKVMLFNAYSVDTECLLDGTAGQILAMHVLPPF----SSVKLPPPPAGSQITGGDSSLAGYHPSIRRLSLIALSSERSSFAVAVEPQVNVLHRWSRP 298          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A1Z5K8H4_FISSO (Vps8 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8H4_FISSO)

HSP 1 Score: 74.3 bits (181), Expect = 1.380e-12
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   20 SDPAAITADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTW----TDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXGHLPPPCLSWG 454
            SD   +T DV G+V+K+ F + ++W+ + VDTECLLDG AG I A+ VLP +    T       L+       LR             L ++A+SS +++F V + P++ V+H+W RPP  +                   LP  CLSWG
Sbjct:  422 SDWKVVTVDVGGIVNKISFTKNMLWSNYSVDTECLLDGTAGQILAMNVLPPYGTIKTQQLRPDPLTDM-----LR------------KLTLIALSSERSSFAVAVEPQINVLHRWARPP--AEKTDDVSINTSNNPVQSEFLP--CLSWG 550          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: B7FQM2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQM2_PHATC)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-11
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 2
Query:   32 AITADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXGHLPPPCLSWG 454
            A+T D  G+V+K+ F + ++W+ +  D +CLLDG AG I ++ VLP +  +  +P L        LRG            + ++A+SS +++F+V + P V V+H+W RPP                     H   PCL+WG
Sbjct:  440 AVTVDAGGLVNKVAFVKNILWSTYSTDIDCLLDGTAGQILSMNVLPPY--AMVNPQLRPENLASVLRG------------MNLIALSSERSSFVVAVDPTVNVLHRWARPP-----QEDLNESKVDDHEREVHAHMPCLAWG 562          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A7S4ALZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALZ4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.380e-10
Identity = 49/154 (31.82%), Postives = 72/154 (46.75%), Query Frame = 2
Query:   35 ITADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTW-----------TDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXGHLPP--PCLSWG 454
            +TAD  G+V+K+ F + ++W+ + V+TECLLDG AG I A+ VLP +               +  + SS G    LR             L ++A+SS +N+F V + P V V+H+W +P                     G  P   PCLSWG
Sbjct:    1 VTADASGLVNKLNFSKNMLWSTYGVETECLLDGTAGQILAVDVLPPYEYIKQQLQLQQNQQQNKANPSSEGAAKKLR--------STMKKLVLIALSSERNSFAVAVEPTVHVLHRWLKP----------DQDRIEGKQKQGSEPVYLPCLSWG 136          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A7S2NXR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXR9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.270e-9
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 2
Query:   23 DPAAITADVEGVVSKMCFRR-VMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKWPR 355
            + + I+ D  G+V K+ F + VMW  + VD+ECLLDG AG I ++ +LP  +    SPS                       +L ++A+SS +++F V + P V V+H+W R
Sbjct:   83 ETSIISVDASGLVYKLNFSKAVMWANYSVDSECLLDGTAGQILSMHILPPLSSLKLSPSAIE---------------KHCCRNLSLIALSSERSSFAVAVEPSVNVLHRWAR 179          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A1E7FY24_9STRA (Vps8 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY24_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.080e-9
Identity = 44/143 (30.77%), Postives = 66/143 (46.15%), Query Frame = 2
Query:   35 ITADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSPSLSSFGGGGGLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEVKVIHKW--PRPPLFSGXXXXXXXXXXXXXXXXGHLPPPCLSWG 454
            +T D  G+V+K+ F + ++W+ + V++ECLLDG AG I AL VLP +          +   G                 L ++A+SS +N+F+V + P V V+H+W  P P    G                     PCLSWG
Sbjct:  308 VTVDAGGLVNKLNFSKNMLWSTYSVESECLLDGTAGQILALNVLPPYQYVKQQLIQQASNNGNTAAAVQTKSLRSTMKKLVLIALSSERNSFVVAVEPSVHVLHRWLKPEPERIVGIARRQNQKERQAQVYL-----PCLSWG 445          
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Match: A0A7S1TXF0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXF0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.460e-7
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 2
Query:   23 DPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVL 163
            DP AI+ D  G V+++ F + ++  W  ++ECLLDGAAGPIP L +L
Sbjct:   66 DPVAISVDTRGCVNRITFTKSLFATWAHESECLLDGAAGPIPMLALL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19397.6219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE4.930e-7089.68Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI1.280e-6785.71Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YZH2_9STRA3.920e-2254.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4HPF7_9STRA8.240e-1340.54Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1Z5K8H4_FISSO1.380e-1233.33Vps8 domain-containing protein n=2 Tax=Fistulifera... [more]
B7FQM2_PHATC1.200e-1130.99Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4ALZ4_9STRA2.380e-1031.82Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S2NXR9_9STRA1.270e-933.04Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1E7FY24_9STRA3.080e-930.77Vps8 domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S1TXF0_9STRA2.460e-748.94Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19397contigEcto-sp13_S_contig19397:982..3125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size458
Hectar predicted targeting categoryother localisation
Exons3
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462984.4552777-CDS-Ecto-sp13_S_contig19397:981..11091681462984.4552777-CDS-Ecto-sp13_S_contig19397:981..1109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19397 982..1109 +
1681462984.4652636-CDS-Ecto-sp13_S_contig19397:1753..19531681462984.4652636-CDS-Ecto-sp13_S_contig19397:1753..1953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19397 1754..1953 +
1681462984.474296-CDS-Ecto-sp13_S_contig19397:2996..31241681462984.474296-CDS-Ecto-sp13_S_contig19397:2996..3124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19397 2997..3124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19397.6219.1prot_Ecto-sp13_S_contig19397.6219.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19397 982..3124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19397.6219.1

>prot_Ecto-sp13_S_contig19397.6219.1 ID=prot_Ecto-sp13_S_contig19397.6219.1|Name=mRNA_Ecto-sp13_S_contig19397.6219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
GRFGGQLRPCGYHGGRGGGGEQDVLSESDVDEMGRRHGVLVGRSRWPDSR
AVRPANLDRLRVITILVLVWGRRRAEGRGCRGSGPGFLRPWHDGHELVEE
HLHCWHSPRGEGDPQVAAPTLIFGWRRRWRSRSCCCCGGGGSPPPAVPIL
GT
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mRNA from alignment at Ecto-sp13_S_contig19397:982..3125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19397.6219.1 ID=mRNA_Ecto-sp13_S_contig19397.6219.1|Name=mRNA_Ecto-sp13_S_contig19397.6219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19397:982..3125+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGTTCGGCGGGCAGCTCCGACCCTGCGGCTATCACGGCGGACGTGG AGGGGGTGGTGAGCAAGATGTGCTTTCGGAGAGTGATGTGGACGAAATGG GTCGTCGACACGGAGTGCTTGTTGGACGGTAAGTGCCGGGAAGCCTTCCC TCCCTGAGAGAGAGAACTGGACAGACAGAGACAGACAGACAGACAGACAG ACAGATAGATAGACAGACAGATAAGGGACAGAGACAGAGACAAAAGCACA GACAGACGAGACAGATGGGGAGAGAGAGGGAGAGAGACCGAGACGGAGAC AGAGAGAAAGAGACGGCGGGCACAGGGAGGAGGGAATGAAGAACAGAGAG GTCGAGCGTAGGTTTTGTGTTCGTGGAGCGGACGTTGACTCAAGACAAAG AGAGGAAGCAGACTGCCTGACACACACGCCCCGCTCTCCAGGCGCTTCGA CCCAAATGAGGGAAAGCAACAGAACAAAACAGAAACAGTGGTATTGATAG CAGGCAACCTCCCCACGGGGTTGTTCCACTCCAGTGTCCTTTTCCCCCGG CCGTCCTTGCCCCGACGCCTTCTCGATCCATTCCGATTAATGTATGATGG TCTACTGCTCTGATTTGTGTGTGTTACTTTCGCAAGTGCTTGGATCCGTG GACCAGTACGGATATTAGAAGGTGCTGGGCGTAGGCAATAGCGGTTTTCA ACGAAATGATGACAATAATATACCACATTTTTTTGTTCGCTTTGCTGATC TTGTCCATCGTCGCTTCTCCAGGAGCCGCTGGCCCGATTCCCGCGCTGTG CGTCCTGCCAACCTGGACCGACTCCGCGTCATCACCATCCTTGTCCTCGT TTGGGGGAGGAGGCGGGCTGAGGGGAGGGGCTGTCGGGGGTCCGGCCCCG GGTTTCTACGACCTTGGCATGATGGCCATGAGCTCGTGGAAGAACACCTT CATTGTTGGCATTCACCCCGAGGTACGGAGGAACCCCCGAAACACAGCAG CGTTCCGAACACCTCTTTTTGGCTTGCTGTCTTTTTGTGTGTAGGTTCGC CAAAGGGATGATGCGAGGGAGCGCAGGGGTCGGTGATATACATGCTATCG CACCGGGCCCGTGCGATGGAAAAAGTCCAAGAACGAAACGATTTTAGTAG TCGACCTCGCACCCCCGGTGCGTTCTCTAAGGTATTATTGTTTGGCTTTC ACTCGTTCTCTCTCTCTCGCTTGGCTGGTTGGTGTTTGTTCCACCCGTGA CGAGATCCCGCCAACGCTATCGATTTGAGTGCCCTCGCAGGCAATCGATT GGCCCTCAAGGCATTACAGCAGCAGTTGATTGATGCAGTTTCCAAGCTAT CCAAGATTACCGGATATTTTGAAAACCACAGCGGGGATACTAGCCCTTGC CGTGCCAACAGTTATACCGTATATCTTGGCGAAGTGAAGTCGCTGGCTGG GAGTGCTACTAGAGCGAACAACGCTGGGGCCGCGCACGCCACATGCGGAG CTTGAAAGCGGTATCTACAACGCCGTAGCTTACCTAAAGAACCACAAGCC TATTATTGTGCCCATCGACGTCGTTTCTTTCGCAATCTTTTGCTTTAGCG GTTCATGCTGCTCTTGTGAAATATTGTGAAAAATATTGTGAAAAATTTTG TGAAAAATATTGTGAAAAAATCACGCTACACTCACGAGTCGGGGGAGCCC GATGGGATAACGTCTTGGTAGTGGTTGGTTCTGCCGCTCTTCTTAGACAG ACGTGTTTACATCGGTCAAACCGCTCTTGTCGGCGTGGACGCCAACGCAA AACACTCACGCGCGCGAGAAGAGAAAGTCTGGGGACCACGCAGACGGGAT CTCTCGTTCGTGGTTGGTTGTTGTTTCCGCCCCCCCCCGTAAGAACAGCC GTCTCTTTTTAGTTTTATCGGTCCGCCGCTACATCAGCGCGGTAAGCATG CCCGCTTGCTGTCGAGAATTGTAGACACAACTAGACACACACACATCGTT TCCCACCCGCAACAGGTGAAGGTGATCCACAAGTGGCCGCGCCCACCCTT ATTTTCGGGTGGCGGCGGCGGTGGCGGTCCCGCAGCTGCTGCTGCTGCGG CGGCGGCGGGTCACCTCCCCCCGCCGTGCCTATCCTGGGGACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19397:982..3125+

>mRNA_Ecto-sp13_S_contig19397.6219.1 ID=mRNA_Ecto-sp13_S_contig19397.6219.1|Name=mRNA_Ecto-sp13_S_contig19397.6219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19397:982..3125+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGTTCGGCGGGCAGCTCCGACCCTGCGGCTATCACGGCGGACGTGG
AGGGGGTGGTGAGCAAGATGTGCTTTCGGAGAGTGATGTGGACGAAATGG
GTCGTCGACACGGAGTGCTTGTTGGACGGAGCCGCTGGCCCGATTCCCGC
GCTGTGCGTCCTGCCAACCTGGACCGACTCCGCGTCATCACCATCCTTGT
CCTCGTTTGGGGGAGGAGGCGGGCTGAGGGGAGGGGCTGTCGGGGGTCCG
GCCCCGGGTTTCTACGACCTTGGCATGATGGCCATGAGCTCGTGGAAGAA
CACCTTCATTGTTGGCATTCACCCCGAGGTGAAGGTGATCCACAAGTGGC
CGCGCCCACCCTTATTTTCGGGTGGCGGCGGCGGTGGCGGTCCCGCAGCT
GCTGCTGCTGCGGCGGCGGCGGGTCACCTCCCCCCGCCGTGCCTATCCTG
GGGACC
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