mRNA_Ecto-sp13_S_contig19379.6213.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19379.6213.1
Unique NamemRNA_Ecto-sp13_S_contig19379.6213.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19379.6213.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.820e-57
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 1
Query:    1 MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 279
            MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKD VVGFLQPLAPSK
Sbjct:  177 MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSK 269          
BLAST of mRNA_Ecto-sp13_S_contig19379.6213.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.310e-53
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    1 MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 279
            MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK
Sbjct:  888 MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 980          
BLAST of mRNA_Ecto-sp13_S_contig19379.6213.1 vs. uniprot
Match: A0A7S3NJJ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJJ4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.590e-14
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPL 267
            M+RAI++A R  + EP++ L+  G S N+ R + ET L AAAYCG  D+ K L E  ADP   DS GN  V LA +QG +++  ++  L
Sbjct:  477 MDRAIWDAFRSAEFEPLLSLLDHGASANYSRLSKETALMAAAYCGRDDVAKRLLELGADPEATDSQGNTAVTLARVQGHNQLAEYIHGL 565          
BLAST of mRNA_Ecto-sp13_S_contig19379.6213.1 vs. uniprot
Match: A0A672H3I0_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA)

HSP 1 Score: 58.2 bits (139), Expect = 9.010e-9
Identity = 34/88 (38.64%), Postives = 45/88 (51.14%), Query Frame = 1
Query:    7 RAIYEAIRLGDTEPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPL 267
            R   + + +G T     L++ G  PN   R  G T LH AA  G LD V+ L    ADP  +D   ++P DLAA  G ++V  FLQ L
Sbjct:   39 RTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126          
BLAST of mRNA_Ecto-sp13_S_contig19379.6213.1 vs. uniprot
Match: A0A0F8CHX7_LARCR (Cyclin-dependent kinase 4 inhibitor C n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8CHX7_LARCR)

HSP 1 Score: 53.9 bits (128), Expect = 2.480e-6
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    7 RAIYEAIRLGDTEPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFL 258
            R   + + LG T  I  L++AG  P+ + +  G T  H AA  G +D V+ L + +ADP + D   NLP+ LAAM G+ EVV  L
Sbjct:   40 RTALQVVMLGSTPVIEVLLKAGADPDRRDQVCGLTVTHDAARQGFVDSVRLLLDYRADPNLCDYKNNLPLHLAAMWGRLEVVKVL 124          
BLAST of mRNA_Ecto-sp13_S_contig19379.6213.1 vs. uniprot
Match: A0A6P3W3Q6_CLUHA (cyclin-dependent kinase 4 inhibitor C n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W3Q6_CLUHA)

HSP 1 Score: 49.3 bits (116), Expect = 2.300e-5
Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = 1
Query:    4 ERAIYEAIRLGDTEPIVGLIRAGVSPNFKR-PAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFL 258
            +R   + + +G T     L+  G  PN +    G T LH AA  G L+ V+ L E  AD    D++   PVDLA + G  EVV FL
Sbjct:   36 QRTPLQVMMMGSTPVARLLLEHGAVPNVRDCSTGTTPLHDAARTGYLETVRLLVEFHADSQATDNNNCRPVDLAQLNGHQEVVDFL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19379.6213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LD31_ECTSI2.820e-5798.92Ankyrin repeat-containing protein, putative n=1 Ta... [more]
A0A6H5KU86_9PHAE1.310e-53100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NJJ4_9STRA2.590e-1443.82Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A672H3I0_SALFA9.010e-938.64Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
A0A0F8CHX7_LARCR2.480e-640.00Cyclin-dependent kinase 4 inhibitor C n=1 Tax=Lari... [more]
A0A6P3W3Q6_CLUHA2.300e-537.21cyclin-dependent kinase 4 inhibitor C n=1 Tax=Clup... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19379contigEcto-sp13_S_contig19379:744..1022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size279
Hectar predicted targeting categoryother localisation
Exons1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462984.0582905-CDS-Ecto-sp13_S_contig19379:743..10221681462984.0582905-CDS-Ecto-sp13_S_contig19379:743..1022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19379 744..1022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19379.6213.1prot_Ecto-sp13_S_contig19379.6213.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19379 744..1022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19379.6213.1

>prot_Ecto-sp13_S_contig19379.6213.1 ID=prot_Ecto-sp13_S_contig19379.6213.1|Name=mRNA_Ecto-sp13_S_contig19379.6213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLV
KDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK
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mRNA from alignment at Ecto-sp13_S_contig19379:744..1022+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19379.6213.1 ID=mRNA_Ecto-sp13_S_contig19379.6213.1|Name=mRNA_Ecto-sp13_S_contig19379.6213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19379:744..1022+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCGCGCGATATACGAAGCCATCCGCCTGGGCGACACCGAGCCGAT CGTCGGCCTCATCCGAGCCGGCGTGTCGCCGAACTTCAAGCGGCCGGCGG GAGAGACGTGCCTGCACGCGGCCGCCTACTGCGGCGCGCTTGACCTCGTG AAGGACCTCGCTGAGCGGAAGGCGGATCCTGCCGTGAAGGATTCGCACGG GAACCTCCCCGTGGACCTGGCCGCGATGCAAGGGAAGGACGAAGTGGTGG GCTTCTTGCAGCCGCTGGCGCCTTCAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19379:744..1022+

>mRNA_Ecto-sp13_S_contig19379.6213.1 ID=mRNA_Ecto-sp13_S_contig19379.6213.1|Name=mRNA_Ecto-sp13_S_contig19379.6213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19379:744..1022+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCGCGCGATATACGAAGCCATCCGCCTGGGCGACACCGAGCCGAT
CGTCGGCCTCATCCGAGCCGGCGTGTCGCCGAACTTCAAGCGGCCGGCGG
GAGAGACGTGCCTGCACGCGGCCGCCTACTGCGGCGCGCTTGACCTCGTG
AAGGACCTCGCTGAGCGGAAGGCGGATCCTGCCGTGAAGGATTCGCACGG
GAACCTCCCCGTGGACCTGGCCGCGATGCAAGGGAAGGACGAAGTGGTGG
GCTTCTTGCAGCCGCTGGCGCCTTCAAAG
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