mRNA_Ecto-sp13_S_contig19377.6212.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19377.6212.1
Unique NamemRNA_Ecto-sp13_S_contig19377.6212.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19377.6212.1 vs. uniprot
Match: D7G136_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.300e-22
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 ENNNETCLYDGGDCCECTCDTDATYPCGTPEYDCLDSRGTTCDGKDVTTASSSTSLYNAKAVFALGISCAMVLVSTLAAS 240
            +NNNE CL+DGGDCCECTCDT + Y CG  +YDCLD  GTTC+           SL+NA A   LGISCAM+LVST+A S
Sbjct:  341 DNNNEDCLWDGGDCCECTCDTTSIYRCGANDYDCLDPSGTTCEEXXXXXXXXXXSLFNANAFLGLGISCAMMLVSTVATS 420
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BLAST of mRNA_Ecto-sp13_S_contig19377.6212.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.460e-5
Identity = 24/51 (47.06%), Postives = 27/51 (52.94%), Query Frame = 1 
Query:    1 ENNNETCLYDGGDCCECTCDTDATYPCGT--------PEYDCLDSRGTTCD 129
            +NNNE C YDGGDCCECTC+      CG         PE  C+D    T D
Sbjct:  213 DNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPEAPCVDEDSFTVD 263
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BLAST of mRNA_Ecto-sp13_S_contig19377.6212.1 vs. uniprot
Match: A0A2E8S136_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8S136_9DELT)

HSP 1 Score: 50.4 bits (119), Expect = 2.730e-5
Identity = 22/35 (62.86%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:    4 NNNETCLYDGGDCCECTCDTDATYPCGTPEYDCLD 108
            NNN TC +DGGDCCE  C   A+Y CG   YDCLD
Sbjct:  284 NNNATCSWDGGDCCESAC-VSASYTCGANNYDCLD 317
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BLAST of mRNA_Ecto-sp13_S_contig19377.6212.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 6.890e-5
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:    4 NNNETCLYDGGDCCECTCDT--DATYPCGTPEYDCLDSRGTTCDGKDVT 144
            NNNE C YDGGDCCECTC+   D  Y C   E+ C+D      +  DVT
Sbjct:  434 NNNEACGYDGGDCCECTCENERDEDYRC--MEFSCIDPSAPCVNDDDVT 480
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19377.6212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G136_ECTSI4.300e-2260.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI2.460e-547.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2E8S136_9DELT2.730e-562.86Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A6H5JM92_9PHAE6.890e-551.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19377contigEcto-sp13_S_contig19377:26..967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size243
Hectar predicted targeting categoryother localisation
Exons3
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462984.0169666-CDS-Ecto-sp13_S_contig19377:25..651681462984.0169666-CDS-Ecto-sp13_S_contig19377:25..65Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19377 26..65 +
1681462984.025631-CDS-Ecto-sp13_S_contig19377:270..3661681462984.025631-CDS-Ecto-sp13_S_contig19377:270..366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19377 271..366 +
1681462984.0337877-CDS-Ecto-sp13_S_contig19377:860..9671681462984.0337877-CDS-Ecto-sp13_S_contig19377:860..967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19377 861..967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19377.6212.1prot_Ecto-sp13_S_contig19377.6212.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19377 26..967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19377.6212.1

>prot_Ecto-sp13_S_contig19377.6212.1 ID=prot_Ecto-sp13_S_contig19377.6212.1|Name=mRNA_Ecto-sp13_S_contig19377.6212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
ENNNETCLYDGGDCCECTCDTDATYPCGTPEYDCLDSRGTTCDGKDVTTA
SSSTSLYNAKAVFALGISCAMVLVSTLAAS*
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mRNA from alignment at Ecto-sp13_S_contig19377:26..967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19377.6212.1 ID=mRNA_Ecto-sp13_S_contig19377.6212.1|Name=mRNA_Ecto-sp13_S_contig19377.6212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19377:26..967+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAATAACAACGAGACTTGCCTTTACGACGGCGGAGACTGTGAGTGAAA
TGTGCCGTGGCAGTTGTCAACATGATTACTCTCGAGCGAGATTCATATCG
TTCCTCTACGTGTACGGTGAAAAGGTTTCGATGACGTCTTCGGCTGAGTT
GTCTGCAGTTTTCACTTCCAATGTCGCATCTTGCATTTTTCTGTCTGCAA
CCATAACGTGTTCACATGCTGTCGCCGACGTCGTTGTTTTTCCAGGCTGC
GAATGCACCTGTGACACCGATGCAACCTACCCGTGCGGTACACCCGAGTA
CGACTGTCTGGATTCTCGGGGTACCACCTGCGACGGTAAGGGTGGGTGCG
GCAAGACTTTTTTGGAAACGTGAATTTGGTAAACGTTGTACGGTATAGGT
ATCGGCGATTCGGCATGCACGAATCGTGAACGGTTGGACATCGACCTTCT
TCAAAGAGAGGTCCGTTGTGAGTGTTTCGATTGAGGCATGTCTTGGTCTA
CATACAATATTCGGCTGGCGTTAGACTATTCCCACAGAGCTCCCATTGCT
GCAGGTGTGTCAACTCCGAGACACATACATGTTGTTTCGGCCAAACGCTC
ATCATACATGTGTGATTAGCATTCCACGAAAGCCGAAACAGCAAGTGAGT
ACGAAAAAAATGCGTTTTATGTCAATAATCGGTATGCAGTGTTGCCGTTT
CCACACGTAGACTGTAGACGATATTCTTTCTGCGGTAAGAACAGACGACC
TTGTCCTCTAACCTTCGGCACCCAATATTAATTTCCCAATCGACAACCCG
GCGCCTACCCTCTCAACGACAAATACTGCAACAAGACGTCACCACTGCTT
CCTCTTCAACGTCGCTCTACAACGCAAAAGCCGTCTTCGCTTTGGGCATC
AGCTGTGCGATGGTGCTGGTCTCCACCCTCGCGGCTTCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19377:26..967+

>mRNA_Ecto-sp13_S_contig19377.6212.1 ID=mRNA_Ecto-sp13_S_contig19377.6212.1|Name=mRNA_Ecto-sp13_S_contig19377.6212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19377:26..967+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAATAACAACGAGACTTGCCTTTACGACGGCGGAGACTGCTGCGAATG
CACCTGTGACACCGATGCAACCTACCCGTGCGGTACACCCGAGTACGACT
GTCTGGATTCTCGGGGTACCACCTGCGACGGTAAGGACGTCACCACTGCT
TCCTCTTCAACGTCGCTCTACAACGCAAAAGCCGTCTTCGCTTTGGGCAT
CAGCTGTGCGATGGTGCTGGTCTCCACCCTCGCGGCTTCCTAG
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