mRNA_Ecto-sp13_S_contig19371.6211.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19371.6211.1
Unique NamemRNA_Ecto-sp13_S_contig19371.6211.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19371.6211.1 vs. uniprot
Match: D8LJR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR9_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 5.200e-163
Identity = 243/262 (92.75%), Postives = 249/262 (95.04%), Query Frame = 1 
Query:    4 WDLSKLSPGLRGALAPSKNKPPRGKIRGGGSGSDATLLFDMSKEHFQHWVCHDVVEGRGSPGQGGSPAGAVVTLSTVVYPLPLLARNPAYASHPIVQAAAAGGGVEGEKNPGGAVVGQRGVEALETLLTRVVLKPTRELRERARGLADRVRERANEWGA----GRPVRIVGLHVRTYFVKAISTAT-LERDLQHFDDCAVAGSGDGADAGSSTFFFVATDEANTQAAAKKVWGDGCYFEPFTLPGSKLEGIKAAFVDLLVSG 774
            WDLSKLSPGLRGALAP+K KPPRGKIRGG SGSDATLLFDMSKEHF+HWVCHDVVEGRGSPGQGGSPAGAVVTLSTVVYPLPLLARNPAYASHPI QAAAAGGG EG+KNPGG VVGQRGVEALETLLTRVVL+PTRELRERARGLADRVRERANEWG     GRPVRIVGLHVRTYFVKAISTAT LER+LQHFDDCAVAGSGDGAD GSSTF+FVATDEANTQAAAKKVWGDGCYFEPFTLPGSKLEGIKAAFVDLLV G
Sbjct:  204 WDLSKLSPGLRGALAPNKKKPPRGKIRGGASGSDATLLFDMSKEHFEHWVCHDVVEGRGSPGQGGSPAGAVVTLSTVVYPLPLLARNPAYASHPIFQAAAAGGGAEGQKNPGGTVVGQRGVEALETLLTRVVLRPTRELRERARGLADRVRERANEWGGXXXXGRPVRIVGLHVRTYFVKAISTATKLERNLQHFDDCAVAGSGDGADTGSSTFYFVATDEANTQAAAKKVWGDGCYFEPFTLPGSKLEGIKAAFVDLLVMG 465
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BLAST of mRNA_Ecto-sp13_S_contig19371.6211.1 vs. uniprot
Match: A0A6H5L5F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F2_9PHAE)

HSP 1 Score: 436 bits (1122), Expect = 2.570e-151
Identity = 231/263 (87.83%), Postives = 236/263 (89.73%), Query Frame = 1 
Query:    4 WDLSKLSPGLRGALAPSKNKPPRGKIRGGGSGSDATLLFDMSKEHFQHWVCHDVVEGRGSPGQGGSPAGAVVTLSTVVYPLPLLARNPAYASHPIVQAAAAGGGVEGEKNPGGAVVGQRGVEALETLLTRVVLKPTRELRERARGLADRVRERANEWGA----GRPVRIVGLHVRTYFVKAISTATLERDLQHFDDCAVAGSGDGADAGS--STFFFVATDEANTQAAAKKVWGDGCYFEPFTLPGSKLEGIKAAFVDLLVSG 774
            WDLSKLSPGLRGALAP+K KPPRGKIRGG SGSDATLLFDMSKEHF+HWVCHDVVEGRGSPGQGGSPA AVVTLSTVVYPLPLLARNPAYASHPI QAAAAG   E EKNPGGAVVGQRGVEALETLLTRVVL+PTRELRERARGLADRVRERA +WG     G PVRIVGLHVRTYFVKAISTATLERDLQHFDDCAVAGS          STF+FVATDEANTQAAAKKVW DGCYFEPFTLPGSKLEGIKAAFVDLLV G
Sbjct:    4 WDLSKLSPGLRGALAPNKKKPPRGKIRGGRSGSDATLLFDMSKEHFEHWVCHDVVEGRGSPGQGGSPAVAVVTLSTVVYPLPLLARNPAYASHPIFQAAAAGWTAEVEKNPGGAVVGQRGVEALETLLTRVVLRPTRELRERARGLADRVRERAKKWGGEGGKGGPVRIVGLHVRTYFVKAISTATLERDLQHFDDCAVAGSXXXXXXXXXXSTFYFVATDEANTQAAAKKVWEDGCYFEPFTLPGSKLEGIKAAFVDLLVMG 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19371.6211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJR9_ECTSI5.200e-16392.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5F2_9PHAE2.570e-15187.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19371contigEcto-sp13_S_contig19371:835..2854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size780
Hectar predicted targeting categoryother localisation
Exons3
Cds size780
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462983.9733431-CDS-Ecto-sp13_S_contig19371:834..13831681462983.9733431-CDS-Ecto-sp13_S_contig19371:834..1383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19371 835..1383 +
1681462983.9818456-CDS-Ecto-sp13_S_contig19371:2107..22361681462983.9818456-CDS-Ecto-sp13_S_contig19371:2107..2236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19371 2108..2236 +
1681462983.9899426-CDS-Ecto-sp13_S_contig19371:2752..28541681462983.9899426-CDS-Ecto-sp13_S_contig19371:2752..2854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19371 2753..2854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19371.6211.1prot_Ecto-sp13_S_contig19371.6211.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19371 835..2854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19371.6211.1

>prot_Ecto-sp13_S_contig19371.6211.1 ID=prot_Ecto-sp13_S_contig19371.6211.1|Name=mRNA_Ecto-sp13_S_contig19371.6211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
KWDLSKLSPGLRGALAPSKNKPPRGKIRGGGSGSDATLLFDMSKEHFQHW
VCHDVVEGRGSPGQGGSPAGAVVTLSTVVYPLPLLARNPAYASHPIVQAA
AAGGGVEGEKNPGGAVVGQRGVEALETLLTRVVLKPTRELRERARGLADR
VRERANEWGAGRPVRIVGLHVRTYFVKAISTATLERDLQHFDDCAVAGSG
DGADAGSSTFFFVATDEANTQAAAKKVWGDGCYFEPFTLPGSKLEGIKAA
FVDLLVSGE*
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mRNA from alignment at Ecto-sp13_S_contig19371:835..2854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19371.6211.1 ID=mRNA_Ecto-sp13_S_contig19371.6211.1|Name=mRNA_Ecto-sp13_S_contig19371.6211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19371:835..2854+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTGGGACTTGTCCAAGCTGTCTCCCGGGCTCCGCGGAGCGCTTGCTCC
CAGCAAGAACAAGCCCCCCCGCGGCAAGATCAGGGGCGGAGGAAGCGGCA
GCGACGCGACTCTTCTGTTCGACATGTCCAAGGAACACTTCCAGCACTGG
GTGTGCCACGACGTGGTGGAGGGGCGGGGGTCCCCCGGCCAGGGGGGGTC
ACCGGCAGGGGCGGTGGTAACGCTCTCGACGGTGGTCTACCCGCTGCCCC
TGCTGGCCCGCAACCCGGCCTACGCGTCGCACCCCATCGTTCAGGCGGCG
GCCGCGGGGGGAGGCGTGGAAGGGGAGAAAAATCCGGGGGGTGCGGTGGT
GGGGCAGAGGGGGGTTGAGGCGCTCGAGACGCTGCTCACGAGGGTAGTCT
TGAAGCCGACCCGGGAGCTGAGGGAGCGAGCGAGGGGGCTCGCGGATAGG
GTTCGTGAGAGGGCGAACGAGTGGGGGGCGGGGCGACCGGTAAGGATCGT
CGGGCTGCACGTGCGGACGTACTTCGTCAAGGCTATCAGCACCGCCACGG
TGAGATACACGCTGTAGTTGCCGAATTTGACCTACGCGCTATCATATGTA
CTTGATTTCCCACGTGCGTACAACACAGTATGCCGGCGAACAACCAGGGA
CAGCAGCGCGTGTTCATGTGACGCCCCATTAATGCTTATAGCGGAAGAAT
TAGAGGCTTGGCTTCGCGCTCTTGTCTTTATTTTCTTGCTCGTGGGTGCA
CGCGTCACGCCCTAGGCGTGGTTCACTGGCGTCGGCCGCGTTTTGTGAAG
ATTCTCGTGTCCTGCGGGGACACAAAGCAAGTAATTTCGAGTGGCAGGAG
CCCCTGCAAACAGAGAAGCAAGCGTCAGAGGCTGTGGAGAAAGGTTTTAC
TCGAGACGTTGATGTTCACGAGATGAACGAGTGCACAGGACATGCTTGCC
CATGCAACGCAGAAGAGGGATCGCCCTTCTACAAACACATACCAATGTGA
TACGCGAAACCCCCTAGATCTGTGTAGATCCGCATCTAGTGCTGAGTACG
CCTGACACGACCTTGCTTTACTTTCTTGTTCTGGACTGAGATCACGTGTC
GTAGGCTCAGAGCACCGGCCGCCCCTCTCTGCTACGTGCCCCCTGTCGTC
CCTTGCGTCGACTCTGTCATGCCCGGTCTCGGCCTGCCGGCTCGACTACA
GAGTTTAACGACCTTTTGGCTTCTTCTTTCTTGTTTTTGCTGGTGTTGCG
TGGCGTCCTGCTTGTGCGAGAAGCTGGAGAGAGACCTCCAGCACTTTGAC
GACTGCGCGGTGGCCGGCAGCGGCGACGGGGCAGACGCCGGCAGTAGCAC
CTTCTTCTTCGTCGCAACAGACGAGGCCAACACGCAAGCGGCAGCAAAGA
AGGTGCTCTTTTTTTTTTCAGGGGTGGGGGCGTACACGTGGGTTGCAGAC
CGTCGGCCCAAGCGTGTCGGTTGACACGGGGCACCGTTCCGGGCACCGTT
CCTGTGGGCACAATCACGTTCGGCGCGTGAGAGACTTTGTTCCTGTCGTG
CTCTCTCTCTGACGTTGGTTTTGGTGTGGAAACCAGCATTTATCGTCATC
TTCTGTCGTGGAGGGGGCGTGGGGATAAGCGGGTTTAAGGTTCAAGTTCT
TCAGATTTGGTGCAAGCTTGGTGCCGTCCGTGTCTTATCACGCCTTCCAA
GGGGACTAACAAAACGTCGCCAGAACCTCGAGGAAACCGGGGACAGAACA
CAAACGCTACAGTGCTCTTTCGATTTCCGCCGCGTACGGACCGTGAAGCC
GCAATCCAGAGCCGAGCGATGCACACCTCGCATGTGATAAATCTCACCCC
CATCGTCCTAGCGTAGATCGCGTTTTGATTGTTCTCCCGCTCACCGTGTT
GTTGTTGCTGTGAGGTAGGTGTGGGGAGACGGCTGCTATTTCGAGCCGTT
CACCCTTCCCGGGAGCAAGCTGGAGGGTATCAAAGCCGCCTTCGTCGACC
TGCTGGTGAGTGGTGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19371:835..2854+

>mRNA_Ecto-sp13_S_contig19371.6211.1 ID=mRNA_Ecto-sp13_S_contig19371.6211.1|Name=mRNA_Ecto-sp13_S_contig19371.6211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19371:835..2854+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTGGGACTTGTCCAAGCTGTCTCCCGGGCTCCGCGGAGCGCTTGCTCC
CAGCAAGAACAAGCCCCCCCGCGGCAAGATCAGGGGCGGAGGAAGCGGCA
GCGACGCGACTCTTCTGTTCGACATGTCCAAGGAACACTTCCAGCACTGG
GTGTGCCACGACGTGGTGGAGGGGCGGGGGTCCCCCGGCCAGGGGGGGTC
ACCGGCAGGGGCGGTGGTAACGCTCTCGACGGTGGTCTACCCGCTGCCCC
TGCTGGCCCGCAACCCGGCCTACGCGTCGCACCCCATCGTTCAGGCGGCG
GCCGCGGGGGGAGGCGTGGAAGGGGAGAAAAATCCGGGGGGTGCGGTGGT
GGGGCAGAGGGGGGTTGAGGCGCTCGAGACGCTGCTCACGAGGGTAGTCT
TGAAGCCGACCCGGGAGCTGAGGGAGCGAGCGAGGGGGCTCGCGGATAGG
GTTCGTGAGAGGGCGAACGAGTGGGGGGCGGGGCGACCGGTAAGGATCGT
CGGGCTGCACGTGCGGACGTACTTCGTCAAGGCTATCAGCACCGCCACGC
TGGAGAGAGACCTCCAGCACTTTGACGACTGCGCGGTGGCCGGCAGCGGC
GACGGGGCAGACGCCGGCAGTAGCACCTTCTTCTTCGTCGCAACAGACGA
GGCCAACACGCAAGCGGCAGCAAAGAAGGTGTGGGGAGACGGCTGCTATT
TCGAGCCGTTCACCCTTCCCGGGAGCAAGCTGGAGGGTATCAAAGCCGCC
TTCGTCGACCTGCTGGTGAGTGGTGAATGA
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