mRNA_Ecto-sp13_S_contig19370.6210.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: D8LBU7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU7_ECTSI) HSP 1 Score: 299 bits (766), Expect = 1.640e-100 Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1
Query: 1 MDDELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARK 447
MDDELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARK
Sbjct: 1 MDDELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARK 149
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: A0A835Z320_9STRA (CDK-activating kinase assembly factor MAT1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z320_9STRA) HSP 1 Score: 137 bits (344), Expect = 7.780e-37 Identity = 76/146 (52.05%), Postives = 101/146 (69.18%), Query Frame = 1
Query: 7 DELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAAR 444
DE VC +CK ++D+ ITQ KL+VNN CGH+F +C ++E R+K F CP C+ V+R GLT+KTLDEL V +++T R+RI KIFN++EEDF L YN+YL +ED+IY L +G EA A +R YED HR EI +N AR
Sbjct: 2 DEDVCSICK-SEDK---ITQDKLLVNNLCGHKFCGSCCDREFSRKKVFQCPKCKKDVKRTGLTQKTLDELAVQKELTHRRRILKIFNKTEEDFE-TLLEYNNYLAEVEDLIYDLTNGVDVEA--CLAKIRAYEDAHREEIIQNQAR 140
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: A0A7S1GHB7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHB7_CYCTE) HSP 1 Score: 118 bits (296), Expect = 9.990e-30 Identity = 59/144 (40.97%), Postives = 94/144 (65.28%), Query Frame = 1
Query: 4 DDELVCVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEI 426
DD C +C A+ ++SN+T Q + N CGH+F AC E+EL RRK FPCP C+ V+R L+ +TLD+++ +D + R+R+TK+FN+ E DF L YN+YLE +ED+IY + + ++ A+ +A V+ YE+ ++ +I
Sbjct: 5 DDLFRCAICGTAEGDSSNLTTQSSLQTNATVGCGHQFCTACVERELSRRKEFPCPICETPVKRVTLSTRTLDDVQCEKDTSWRRRVTKVFNKIESDFS-TLLEYNNYLEEVEDIIYAIVN-EEPNAEEMKAKVKAYEEANKSQI 146
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: B7G382_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G382_PHATC) HSP 1 Score: 116 bits (291), Expect = 5.600e-29 Identity = 55/144 (38.19%), Postives = 97/144 (67.36%), Query Frame = 1
Query: 4 DDELVCVLCKGAQDEASNITQQKLVVNN---KCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEI 426
DD C LC A+ ++SN++ + N +CGH+F +C ++EL+R++ FPCP CQ V+R LT ++LD+++ +D + R+R+ K+FN++E DF L +N+YLE +ED+IY + + ++ +A+ +A ++EYE+ H+ EI
Sbjct: 7 DDLFRCALCGTAEGDSSNLSSHTSLQTNATVRCGHQFCNSCIDRELVRKREFPCPVCQTPVKRVTLTVRSLDDVQCEKDTSWRRRVLKVFNKTEPDFSS-LLEFNNYLEQVEDMIYSIVN-EEPDAEACKAKIKEYENAHKTEI 148
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: A0A7R9W6S0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6S0_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.140e-28 Identity = 54/139 (38.85%), Postives = 94/139 (67.63%), Query Frame = 1
Query: 19 CVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEI 426
C +C + ++SN+T Q + N CGH+F AC E+EL RR+ FPCP C+ +V+R L+ +TLD+++ +D + R+R+ K++N++E DF LR YNDYLE +ED+I+ + + ++ +A+ +A +R YE+ ++ +I
Sbjct: 12 CAVCGVQEGDSSNLTTQSALWTNATVGCGHQFCTACVERELSRRRVFPCPICETEVKRVTLSTRTLDDVQCEKDTSWRRRVMKVYNKAESDFPS-LREYNDYLEEVEDIIFKIVN-EEPDAEEMKAKLRTYEEANKSQI 148
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: A0A6U3UWA8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UWA8_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.860e-28 Identity = 57/139 (41.01%), Postives = 94/139 (67.63%), Query Frame = 1
Query: 19 CVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEI 426
C +C ++ +ASN+T Q + N CGH+F +C E+EL RRKTFPCP C+ V+R L+ +TLD+L+ +D + R+RI KI+N+ E+DF L YN+YLE +ED+I+ + + ++ A+ +A V+ YE++++ +I
Sbjct: 14 CAICGLSEGDASNLTTQNNLQTNGTLGCGHQFCNSCVERELSRRKTFPCPICKTVVKRVTLSTRTLDDLQCEKDTSWRRRILKIYNKVEKDFP-TLLEYNNYLEEVEDIIFSIVN-EEPNAEEVKAKVKAYEEKNKSQI 150
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: A0A7S3DRW1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRW1_9STRA) HSP 1 Score: 114 bits (286), Expect = 4.960e-28 Identity = 55/139 (39.57%), Postives = 91/139 (65.47%), Query Frame = 1
Query: 19 CVLCKGAQDEASNITQQKLVVNN---KCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEI 426
C +C A+ +ASN++ Q + N +CGH+F +C ++EL+RR+ FPCP CQ V+R LT ++LD ++ +D + R+RI ++N+SE DF L YN+YLE +ED+IY + + + A+ +A V+EYE ++ +I
Sbjct: 37 CAICGTAEGDASNLSNQTSLQTNATVRCGHQFCNSCLDRELVRRREFPCPICQTAVKRVNLTSRSLDHVQCEKDTSWRRRIISVYNKSENDFPS-LLEYNNYLEQVEDMIYAIVNEEPA-AEEIKAKVKEYEQENKAQI 173
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: A0A6U3Q473_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q473_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.830e-28 Identity = 56/144 (38.89%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 4 DDELVCVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEI 426
DD C +C ++ ++SN+T + N CGH+F C E+EL RRK FPCP C+ V+R L+ +TLD+++ +D + R+R+ K++N+ E DF L YN+YLE +ED+IY + + ++ A+ +A V+ YE+ ++GEI
Sbjct: 11 DDLFRCAVCGVSEGDSSNLTTVTALYTNATVGCGHQFCSTCVERELARRKVFPCPVCETAVKRVTLSTRTLDDVQCEKDTSWRRRVLKVYNKVETDFPS-LLEYNNYLEEVEDIIYSIVN-EEPNAEEVKAKVKAYEEANKGEI 152
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: A0A1E7FR87_9STRA (RING-type domain-containing protein n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FR87_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.480e-27 Identity = 54/144 (37.50%), Postives = 94/144 (65.28%), Query Frame = 1
Query: 4 DDELVCVLCKGAQDEASNITQQKLVVNNK---CGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEI 426
+D C +C A+ ++SN+T Q + NN CGH+F +C ++EL RR+ FPCP C+ V++ L+ +TLD++ +D + R+R+ K+FN++++DF L YN+YLE +ED+IY + + ++ A+ + ++ YE+ HR EI
Sbjct: 10 EDLFSCAICGIAEGDSSNLTSQSQLQNNSTVGCGHQFCSSCIDRELSRRREFPCPICETPVKKVTLSTRTLDDVLCEKDTSWRRRVMKVFNKTQKDFPS-LLEYNNYLEEVEDMIYSIVN-EEPNAEECKGKIKAYEENHRTEI 151
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Match: D0N908_PHYIT (RING-type domain-containing protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=D0N908_PHYIT) HSP 1 Score: 111 bits (278), Expect = 7.030e-27 Identity = 55/143 (38.46%), Postives = 90/143 (62.94%), Query Frame = 1
Query: 19 CVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARK 447
CV A+D+++ + + ++ +KCGHRF C ++E ++ CPACQ V+++ L +KT++EL A++ +VRK++TK +N++E+DF L YNDYLET+E++I+ L GD E AQ ++Y H I N A+K
Sbjct: 15 CVCGTSAEDDSNYLNTKMKMLISKCGHRFCDHCIKREFQHQREISCPACQKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFD-TLEEYNDYLETLENLIFDLVYGDDAEKAAAQKQWKQYRQEHAIAIATNDAKK 156 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19370.6210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19370.6210.1 >prot_Ecto-sp13_S_contig19370.6210.1 ID=prot_Ecto-sp13_S_contig19370.6210.1|Name=mRNA_Ecto-sp13_S_contig19370.6210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp MDDELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFback to top mRNA from alignment at Ecto-sp13_S_contig19370:986..3311+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19370.6210.1 ID=mRNA_Ecto-sp13_S_contig19370.6210.1|Name=mRNA_Ecto-sp13_S_contig19370.6210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19370:986..3311+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19370:986..3311+ >mRNA_Ecto-sp13_S_contig19370.6210.1 ID=mRNA_Ecto-sp13_S_contig19370.6210.1|Name=mRNA_Ecto-sp13_S_contig19370.6210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19370:986..3311+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |