mRNA_Ecto-sp13_S_contig19357.6206.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19357.6206.1
Unique NamemRNA_Ecto-sp13_S_contig19357.6206.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19357.6206.1 vs. uniprot
Match: D7G3S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.380e-10
Identity = 44/59 (74.58%), Postives = 47/59 (79.66%), Query Frame = -1 
Query:    1 SSKTVGPKTKADGAAPRNDDDXXXXXXXHDDPSGGAPGRNGRRVQLSVGAGESKVQVPV 177
            ++ T GPKTKADGAAP+ND  XXXXXXX     GGAPG  GRRVQLSVGAGESKVQV V
Sbjct:  689 TASTAGPKTKADGAAPQNDXXXXXXXXXXXXXXGGAPGWTGRRVQLSVGAGESKVQVLV 747
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19357.6206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3S3_ECTSI1.380e-1074.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19357contigEcto-sp13_S_contig19357:323..1633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size292
Hectar predicted targeting categoryother localisation
Exons3
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462983.6410563-CDS-Ecto-sp13_S_contig19357:323..3781681462983.6410563-CDS-Ecto-sp13_S_contig19357:323..378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19357 324..378 -
1681462983.6509316-CDS-Ecto-sp13_S_contig19357:785..8541681462983.6509316-CDS-Ecto-sp13_S_contig19357:785..854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19357 786..854 -
1681462983.6589146-CDS-Ecto-sp13_S_contig19357:1466..16331681462983.6589146-CDS-Ecto-sp13_S_contig19357:1466..1633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19357 1467..1633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19357.6206.1prot_Ecto-sp13_S_contig19357.6206.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19357 324..1633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19357.6206.1

>prot_Ecto-sp13_S_contig19357.6206.1 ID=prot_Ecto-sp13_S_contig19357.6206.1|Name=mRNA_Ecto-sp13_S_contig19357.6206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
YRYLHLRFPGSHGKLHPPAIPPRCTTRRVIMRGSPLASVIVVSWCCSIGL
RLRAYSLRANQRNQGTEERKKSSDGIESCAGSPKDRARTGVRHFTAD
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mRNA from alignment at Ecto-sp13_S_contig19357:323..1633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19357.6206.1 ID=mRNA_Ecto-sp13_S_contig19357.6206.1|Name=mRNA_Ecto-sp13_S_contig19357.6206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19357:323..1633- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCGGTACCTGCACCTTAGATTCCCCGGCTCCCACGGAAAGCTGCACCC
TCCGGCCATTCCGCCCAGGTGCACCACCAGAAGGGTCATCATGCGAGGAT
CCCCCTTGGCCTCCGTCATCGTCGTTTCGTGGTGCTGCTCCATCGGCCTT
CGTCTTCGGGCCTACAGGTAATTGGTTGAGGGCTGGTCGTCACGAACAAT
CATGACTAGGTCGCCACCGCCTTAAACAGAGGGTCCCAGACTGTGCAAGC
ACAATACCTAGCCTAGCCTACTACAGTAGTTTTAGAGTTTTCACCTGCTG
TAGCCTAGTCCATAGAGTGTTCACCTGCTGTAGATGCTGTAGATGTCAGG
ATCTTCAGTCTTTCGGGGTTGAAGAACCCGAACTCCCCGTCTTTGACCTT
TCCAGGGTTGTCCTCGAGCGCCTTGAGCATCAGCTTGGGTACCGTATCGC
CCCCTTCACGGACAGCGCGAACAAGGCTCTTGAATCTGTCCGCCCTCGAT
GCAAGTTTGTGCGTCTTGTAGATCGGCTCCAAGAACCAATCTACGATGAA
GCAGGCCATGAAAGTCGCCACAACCCTTTGCCGCCTTTTACCCTTCGCCT
CCTCCGCCTTCGCCTCCTGCGCAGCCGCAGTCCCCGCAACCTTTTGCTGC
CGTTTGCCCTTGCCCTTTCTGCCCTTGCCCTGCTGATCCTTCGTCGTCTC
CCCCTTACCCTCCCCCTTGTCTGCGGTACTGCTGTCACCATCGGTTTGGG
GGCCATCGGTTTGGGGGGTTGGCGTGAAGTCTTCGAGCTAACCAGCGAAA
CCAAGGGACGGAGGAAAGGAAGAAATCGAGCGACGGAATAGAAAGTTGGT
TAGTAGTAGAAGTAAACTTCAAGGGCATATGTTCTTTCGGGCAAGGTGGA
CTACCTATGGTACTGCAGGACACATGTTCAGATATCGAGAACCAACCAGG
TCGTAGAAATCGAACACCACAATTCAACAGTACAGAAAAGTAGTGCCTTT
TGGTGCGATGGACCATATTCGGACTGCCCTCACCCAATCGTTCCATGTCT
CGTCCGAAAACATCGCTTCTGACCCGCTAATCGACAGGAAGGTCTTATTG
GCGTAGCCGTTGACCACCAAAATTGTGGTGTTCGAAGGGTTGATATCTTC
GGAGGGCGTCTGCCCCGAGGTAAAGGCGTCGTTGTAGGCTTTGGACCTCC
GCGCTGCTGATTTCTTGAGCTTCGTCCTGTTGATCTTGTTGTTCGATGAG
TCCAGCGCGGGGAGTCCGAAAGATCGTGCCAGGACCGGAGTCAGACACTT
CACGGCCGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19357:323..1633-

>mRNA_Ecto-sp13_S_contig19357.6206.1 ID=mRNA_Ecto-sp13_S_contig19357.6206.1|Name=mRNA_Ecto-sp13_S_contig19357.6206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19357:323..1633- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCGGTACCTGCACCTTAGATTCCCCGGCTCCCACGGAAAGCTGCACCC
TCCGGCCATTCCGCCCAGGTGCACCACCAGAAGGGTCATCATGCGAGGAT
CCCCCTTGGCCTCCGTCATCGTCGTTTCGTGGTGCTGCTCCATCGGCCTT
CGTCTTCGGGCCTACAGTCTTCGAGCTAACCAGCGAAACCAAGGGACGGA
GGAAAGGAAGAAATCGAGCGACGGAATAGAAAGTTGCGCGGGGAGTCCGA
AAGATCGTGCCAGGACCGGAGTCAGACACTTCACGGCCGAC
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