mRNA_Ecto-sp13_S_contig19339.6201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19339.6201.1
Unique NamemRNA_Ecto-sp13_S_contig19339.6201.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: D7G3A2_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A2_ECTSI)

HSP 1 Score: 580 bits (1495), Expect = 1.340e-203
Identity = 289/319 (90.60%), Postives = 299/319 (93.73%), Query Frame = 1
Query:    1 KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFAGSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTSFYTFDQEFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYGKKAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAASEEEKSKTTRVEGFELFEKGDIHLQPGFDPPVAVKKILVEREERLXXXXXXXXXXXXETKHV 957
            KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFA   V E  ++  G+C  +   LHEGDDYKKVWTAFTSFYTFDQEFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVG+WVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYGKKAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAAS+EEKS++TRVEGF LF++GDIHLQPGFDPPVAVKKILVEREE  XXXXXXXX    ETKHV
Sbjct:  309 KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFADFSVSEEDIMTSGQCGCLDYDLHEGDDYKKVWTAFTSFYTFDQEFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGTWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYGKKAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAASDEEKSESTRVEGFGLFKQGDIHLQPGFDPPVAVKKILVEREEXXXXXXXXXX----ETKHV 623          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: A0A6H5K0B2_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B2_9PHAE)

HSP 1 Score: 568 bits (1464), Expect = 1.470e-196
Identity = 288/319 (90.28%), Postives = 293/319 (91.85%), Query Frame = 1
Query:    1 KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFAGSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTSFYTFDQEFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYGKKAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAASEEEKSKTTRVEGFELFEKGDIHLQPGFDPPVAVKKILVEREERLXXXXXXXXXXXXETKHV 957
            KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFA   V E  V+  G+C  +   L EGDDYKKVWTAFTSFYTFDQEFTEEEMRILA QWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPY IM+DVITPQFTFYGKKAPNTM+NRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAASEEEKSKTTRVEGF LFEKGDIHLQPGFDPP AVKKILVE     XXXXXXXXX   ETKHV
Sbjct:  474 KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFADFSVSEEDVMTSGQCGCLDYDLVEGDDYKKVWTAFTSFYTFDQEFTEEEMRILATQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYGIMSDVITPQFTFYGKKAPNTMQNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAASEEEKSKTTRVEGFGLFEKGDIHLQPGFDPPAAVKKILVEXXXXXXXXXXXXXX---ETKHV 789          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 5.990e-54
Identity = 107/283 (37.81%), Postives = 151/283 (53.36%), Query Frame = 1
Query:   28 IVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFAGSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTSFYTFDQEFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYGKKAP-----NTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFF-----DTSTMKSGPKGTAASEEEKSKTTR---VEGFELFEKGDI 837
            +VGEE  L ++   FV RKDMFRD +F C G         +VL  G C      L +GDDY +++ +         +  E   R L    C+  +  G+  QSSS LDP+FWS HPTMERL ++ +L G  TD+ WPD   ++   DG  Y   IS  S+ C GHRGSD+FP+DI+ + +       G K       NTM NR ++  FDP  NALP++YD FEW+HC+E G+D  D +     + ++   GP G A S ++  +      + G  +FEK D+
Sbjct:  465 LVGEETALDLALMAFVHRKDMFRDGIFSCEGSVAVTESPDEVLESGVCGCHGYDLTQGDDYLQIFESMVFMKELMGDSDENTKRELVRVMCSTPINEGDHLQSSSSLDPSFWSTHPTMERLWMYSVLTGQVTDFEWPDADVTYTASDGTTYSQPISKYSEECLGHRGSDVFPFDILANEVNDFTVQTGIKGSPLGGGNTMTNREVLAAFDPRINALPYVYDTFEWAHCAEDGFDLRDAWLAKGDEEASRGEGPGGQAMSAKKGPRAVSRQSIGGGTVFEKDDL 747          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 2.740e-45
Identity = 96/259 (37.07%), Postives = 144/259 (55.60%), Query Frame = 1
Query:   10 LDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFA--GSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTSFYTFDQ---EFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRS---DTCNGHRGSDIFPYDIMT---DVITPQFTFYGK-KAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKS 750
            +  V ++VGE+   S+S   F +RK+++RD  F+C G A  G+P  E  +L  G+C  +   L +GDD+K ++T   S   FD    ++ +E  R +    C   +  G+   + S LDPTFW+MHPTMERL +F  L G  TD+ WPD   S+   DG   ++++ T     DTC+GH GSD+FP+D++    D    +    G  +  N + NR ++ + D   N LP++YDNF W HC + G DF D +D ST  S
Sbjct:  438 ISSVSSLVGEKNANSLSLKTFDQRKNLWRDGFFECEGSAAVGTPADE--LLSSGKCGCLGYDLSQGDDWKTIYT--NSTVDFDDVIGDYDDETKRQVVAAVCASTIFDGDHLHAGSSLDPTFWAMHPTMERLFMFSSLTGQLTDFHWPDSEFSYTDSDG---NIVVETTGIYGDTCHGHGGSDVFPFDLLDGDDDAFQIKTGMPGNGETGNKLTNREVLAVLDARFNMLPYVYDNFRWDHCLKDGIDFEDAWDASTSSS 689          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.030e-44
Identity = 89/262 (33.97%), Postives = 144/262 (54.96%), Query Frame = 1
Query:    1 KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFAGSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTSFYTFDQEFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTF-----YGKKAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAA 771
            ++  +++  +VG+     ++   F+ RK+++RD +FKC G A       +V++  RC  +   L EG+DY++++   +       ++  +  R +    C   +  G+  Q+SS LDP+FWS HPTMERL ++ +L G  TD+SWPD   ++   DG      +S   ++C GH GSD+FP+ ++ D  T  F       +     N + NR  ++ FDP  NALP++YD F W HC+  GYDF D + +ST KS  K T+A
Sbjct:  495 EETYERIEGLVGKIAASQLAEQSFIHRKNLYRDGIFKCDGRADVAQSSEEVML-SRCGCLGYNLTEGNDYERIYHTMSVIDDVIGDYDADTKRQVVEAICTTTLVDGDHLQASSSLDPSFWSTHPTMERLWMYVVLTGQITDWSWPDADVTYTTPDGTVVTESLSEYEESCFGHHGSDVFPFGLL-DTDTDGFEIKTGISFNSATGNELTNREALQAFDPRINALPYVYDTFNWEHCAADGYDFGDAWQSSTKKS--KSTSA 752          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.340e-44
Identity = 92/250 (36.80%), Postives = 138/250 (55.20%), Query Frame = 1
Query:   10 LDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFA--GSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTSFYTFDQ---EFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTD---VITPQFTFYG-KKAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFD 732
            +  + ++VGE+   S+S   F +RK+++RD  F C G A  G+P  E  +L+ G+C  +   L++GDD+K ++T   S   FD    ++ +E  R +    C   +  G+   + S LDPTFW MHPTMERL +F  L G  TD+ WPD   S+   DG       ST  DTC+GH GSD+FP+ ++ D       +    G ++  N + NR ++ + D   N LP++YDNF W HC + G DF D +D
Sbjct:  436 ISSISSLVGEKNANSLSLNTFDQRKNLWRDGFFACEGSAAVGAPADE--LLLSGKCGCLGYDLNQGDDWKTIYT--NSTLDFDDVIGDYDDETKRQVVAAVCASTIYDGDHLHAGSSLDPTFWPMHPTMERLFMFSSLTGQLTDFHWPDSEFSYSDSDGNTVVETTSTYGDTCHGHGGSDVFPFGLLDDDDDAFKIKTGMQGNEETGNKLTNREVLAVLDARYNMLPYVYDNFRWDHCLQDGIDFYDAWD 681          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: D8LB18_ECTSI (ShTK domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB18_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 4.200e-43
Identity = 94/261 (36.02%), Postives = 139/261 (53.26%), Query Frame = 1
Query:   10 LDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFA--GSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTSFYTFDQ---EFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYG----KKAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKS-GPKG 762
            +  + ++VGE+   S+S   F +RK ++RD  F C G A  G+P  E  +L  G+C  +   L +GDD+K ++T   S   FD    ++ ++  R +    C   +  G+   + S LDPTFW MHPTMERL +F  L G  TD+ WPD   S+   DG       S   DTC+GH GSD+FP+ ++ D         G    ++  N + NR ++ + D   N LP++YD+F W HC + G DF D +D ST  + G KG
Sbjct:  265 ISYISSLVGEKNANSLSLNTFDQRKSLWRDDFFACEGSAAVGAPADE--LLSSGKCGCLGYDLSQGDDWKTIYT--NSTLDFDDVIGDYDDKTKRQVVAAVCASTIYDGDHLHAGSSLDPTFWPMHPTMERLFMFSSLTGQLTDFYWPDSEFSYSDSDGNTVVETTSKYGDTCHGHSGSDVFPFGLLEDDDAGFKIKTGMLGNEETGNKLTNREVLAVLDARYNMLPYVYDDFRWDHCLQDGIDFYDAWDASTASNDGRKG 521          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 4.960e-43
Identity = 83/244 (34.02%), Postives = 132/244 (54.10%), Query Frame = 1
Query:    1 KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFAGSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTSFYTFDQEFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIM---TDVITPQFTFYGKKAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSD 723
            +K    +  +VG      ++ Y F+ RK++FRD +F C G A      A+VL  G+C      L +GDDY+ ++           +F  +  R +    C   +  G+  Q+SS LDP+F++ HPTMERL ++ +L G  TD++WPD+  +    DG      +S   +TC GH GSD+FP+ I+   TD    +    G +  NT+ NR L++ FD   N++ ++YD F+W+HC   G+DF+D
Sbjct:  509 EKTFGAIAELVGPSIAEDLALYSFIHRKNLFRDGIFSCVGSATVVQAPAEVLSSGQCGCRGYDLTQGDDYESIYYNIVDLDDLIGDFDADVKRQVVAALCTTTMNDGDHLQASSSLDPSFYATHPTMERLWMYAVLTGQITDFTWPDDDVTITKPDGTVEVESLSLYGETCQGHGGSDVFPFGILDSDTDGFEVKTGVKGMENGNTLTNRELLQAFDARSNSVSYVYDTFKWTHCEADGFDFND 752          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 4.520e-38
Identity = 93/274 (33.94%), Postives = 136/274 (49.64%), Query Frame = 1
Query:    1 KKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFAGSPVGEAKVLVPGRCVHVAGVLHEG-DDYKKVWTAFTSFYTFDQ---EFTEEEMRILAMQWCNGEVGMGESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYGKKAP----NTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAASEEEKSKTT 798
            ++ +  V  +VGEE   S++ Y F +RK+ +RD  F C G A +   E  V   G C  +   L    DD++ ++  + S   FD    ++ +E  R++  + C   +  G+  Q+ S LDPTFW MHPTMERL +F  L G   D  WPD        D    + +IS   D C GH GSD+FP++++           G K      N+  NR ++   DP  N L ++YD F+W HC   GYDF   FD S+         AS E+K+K+T
Sbjct:  470 EETMASVSGLVGEENANSLALYAFDQRKNFWRDGFFDCEGTAEAGATEDDVFSAGMCGCLGFDLSSNSDDWQTIY--YNSTIDFDNVISDYDDETKRMVVAEVCASTIHDGDHLQAGSSLDPTFWPMHPTMERLFMFARLTGNTYDLDWPD-------ADASSSNEMISRYGDDCVGHGGSDVFPFNLLDSDHDGFEIKTGMKGNPEIGNSFTNREVLAAMDPRVNQLSYVYDTFKWDHCLGSGYDFDTAFDYSST--------ASAEDKAKST 726          
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Match: A0A6H5K485_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K485_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 8.530e-37
Identity = 87/262 (33.21%), Postives = 134/262 (51.15%), Query Frame = 1
Query:   10 LDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFAGSPVGEAKVLVPGRCVHVAGVLHEGDDYKKVWTAFTS-FYTFDQEFTEEEMRILAMQWCNGEVGMGE----------SSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDGVEYDVIISTRS---DTCNGHRGSDIFPYDIMT---DVITPQFTFYGK-KAPNTMKNRMLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTST 741
            +  + ++VGE    S+    F +RK ++   +F C GFA   +   ++L  G+C  +   L +GDD+K ++   TS    F  ++ +E  R +    C   +  G+            ++ S LDPTFW MHPT+ERL VF  L G  T++ WPD   S+   +G   D ++ T S   D C GH GSD+FP+ ++    D +  +    G  +  NT+ NR  +   D   N LP++YDNF+W HC + G DF D +D ST
Sbjct:  548 ISSLSSLVGENNANSLLN-TFKQRKLLWSYGMFGCEGFAAEGIPTDELLSSGKCGCLGYNLSQGDDWKTIYANPTSNLDDFIGDYDDETKRQVVAAVCASTIYYGDHLHVSVRALFGHEAGSSLDPTFWPMHPTIERLFVFSALTGQLTNFHWPDSELSYTDTNG---DTVVETTSNYGDKCYGHGGSDVFPFGLLDNDDDALKIKTGMQGNGETGNTLTNREALANMDGRFNNLPYVYDNFKWEHCLDSGIDFDDAWDAST 805          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19339.6201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3A2_ECTSI1.340e-20390.60Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K0B2_9PHAE1.470e-19690.28TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5J676_9PHAE5.990e-5437.81TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7FW00_ECTSI2.740e-4537.07Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D8LC42_ECTSI1.030e-4433.97TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D7G9A4_ECTSI2.340e-4436.80Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D8LB18_ECTSI4.200e-4336.02ShTK domain containing protein n=1 Tax=Ectocarpus ... [more]
D8LC46_ECTSI4.960e-4334.02Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
A0A6H5JRR4_9PHAE4.520e-3833.94TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5K485_9PHAE8.530e-3733.21TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19339contigEcto-sp13_S_contig19339:850..2968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score108.2
Seed ortholog evalue6.9e-21
Seed eggNOG ortholog44056.XP_009039156.1
Model size960
KEGG koko:K14347
KEGG TC2.A.93.1
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.symporter activity
EggNOG OGsCOG0385@1,KOG4821@2759
Cds size939
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19339.6201.1prot_Ecto-sp13_S_contig19339.6201.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19339 850..2947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462983.0359263-CDS-Ecto-sp13_S_contig19339:849..11041681462983.0359263-CDS-Ecto-sp13_S_contig19339:849..1104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19339 850..1104 -
1681462983.0502841-CDS-Ecto-sp13_S_contig19339:1371..15661681462983.0502841-CDS-Ecto-sp13_S_contig19339:1371..1566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19339 1372..1566 -
1681462983.0601962-CDS-Ecto-sp13_S_contig19339:1881..19961681462983.0601962-CDS-Ecto-sp13_S_contig19339:1881..1996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19339 1882..1996 -
1681462983.0699537-CDS-Ecto-sp13_S_contig19339:2315..25121681462983.0699537-CDS-Ecto-sp13_S_contig19339:2315..2512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19339 2316..2512 -
1681462983.079538-CDS-Ecto-sp13_S_contig19339:2770..29471681462983.079538-CDS-Ecto-sp13_S_contig19339:2770..2947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19339 2771..2947 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462983.088875-UTR-Ecto-sp13_S_contig19339:2947..29681681462983.088875-UTR-Ecto-sp13_S_contig19339:2947..2968Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19339 2948..2968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19339.6201.1

>prot_Ecto-sp13_S_contig19339.6201.1 ID=prot_Ecto-sp13_S_contig19339.6201.1|Name=mRNA_Ecto-sp13_S_contig19339.6201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
MAIVGEEYRLSMSGYLFVKRKDMFRDAVFKCRGFAGSPVGEAKVLVPGRC
VHVAGVLHEGDDYKKVWTAFTSFYTFDQEFTEEEMRILAMQWCNGEVGMG
ESSQSSSPLDPTFWSMHPTMERLLVFKLLAGTFTDYSWPDEVGSWVGMDG
VEYDVIISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYGKKAPNTMKNR
MLIKLFDPSENALPFIYDNFEWSHCSEMGYDFSDFFDTSTMKSGPKGTAA
SEEEKSKTTRVEGFELFEKGDIHLQPGFDPPVAVKKILVEREERLKQQQQ
QQQQQQEETKHV*
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mRNA from alignment at Ecto-sp13_S_contig19339:850..2968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19339.6201.1 ID=mRNA_Ecto-sp13_S_contig19339.6201.1|Name=mRNA_Ecto-sp13_S_contig19339.6201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19339:850..2968- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAAAAACCTCGACAAGGTTATGGCCATCGTGGGAGAGGAGTACCGGTT GAGTATGTCCGGGTACCTGTTCGTGAAGCGCAAGGACATGTTCCGCGACG CCGTGTTCAAGTGCCGGGGCTTCGCCGGGTCCCCTGTTGGTGAAGCGAAA GTCCTTGTCCCCGGCCGCTGTGTTCACGTGGCGGGCGTCCTCCACGAGGT TTGTGTTTTTTTTTTTTGATAGACGGGAATCTTTCATGTCCCGTAATAAG CTGTGCGTCTGTCTGTTGCTTTATAAGAGAAACGACTATGCGTCAATGAA GGGCGGTCGTCAGCATTTAATCTTCAACAAATCGTTGATAGGGGCGACGC AGATGTGCTTTTGCCGCTTCTCGTGCAATTTTCACTTGGACCTGCTGCTC CTCAACGCGACTCCGTAACGGCGCGAACGACTTTTGTTTGACGCGTTACC CCTCAGGGCGACGACTACAAAAAGGTCTGGACGGCGTTCACGTCGTTCTA CACGTTCGACCAGGAGTTCACAGAGGAGGAGATGAGGATATTGGCCATGC AGTGGTGCAACGGAGAGGTCGGGATGGGGGAGTCGTCCCAGTCGAGCAGC CCGCTCGACCCCACCTTCTGGTCCATGCACCCGACCATGGAACGACTCTT AGTGTGAGAACCGAAAACAATTTCCCTTTTTCTTTATTTTCAGCTTTTTT CGTGAACTACCGTCAAGCGCTAGCAAGTTAGGTTGTCTTTTTTGTGATTG CTCTATCAGTTTTATCATGCGGTGTCGCTAGAAAAAATGTTGTGCCCTGT TACCCAGCTCCGCGCGCTTTTGTATTCTTCAATTTGCAGAACTTCGAAGG AAAGCATCGATCACGTCATTTTTTTTCGACAGTGCAGTGGTTTCATATCG ACTCTCCCTCGTCTGGACGCGTTCTCGTGCTTGTTGATTCCTACTGCGGC GGCGGTGACGGCGGCGGCGTAGTTTCAAGCTCCTAGCTGGAACTTTCACT GACTACTCTTGGCCCGACGAAGTGGGGTCGTGGGTTGGCATGGACGGTGT GGAGTACGACGTCATCATCTCGACGCGCTCTGATACGGTGCGTTTCCTAA TTTTGCTACATACGGATATTTCAGCATGTTGTTGACCGGTTCCTGATGCT GTCGCTACATACACGGTGCCATTTAAGCATGTTGTTGACCGATTTCTTGG TGTTGTTGCCATGTATCACGGCATGCTAATTTTTTTCTCGTTTGTAAGCG TTCCTGGGTGTGATGCATAATTTTGTTTGATGACCGATTTTGCGTTGCGT CTTGCCCCCTCTTCGCATGCCCTTCTGTGTTGGTTTCTCGTTGCGCAACC CGCCTGCCCCTTCCCCCGCCGTTTTCTCCTTGTCGTTGCCACCATCATAC AGTGCAACGGTCACCGAGGCAGCGACATCTTCCCGTACGACATCATGACC GACGTTATCACGCCGCAGTTCACCTTCTACGGCAAGAAGGCCCCGAACAC GATGAAAAACCGGATGCTTATCAAGCTCTTCGACCCTAGCGAGAACGCCC TGCCCTTCATCTACGACAACTTCGAGTGGTCGCACTGCTCCGAAATGGTG CGTATTTTTTTGTCCCTAGTTTTTCGTTGCTACTGGTGCTGTACACGATG AAGTAGAATGGAAGACCGAGACGAAGGAAGGGCAGTCGCTTCAAATGACT GGTTCTTCACTCAGTGGCAGCTCTCCGTTGGGAGCTATCAAACACGGTGG CCTGGCCGGGAGGGTCTGGTTAAAAGCATTCGTATGTTTTCACCCGGAAA GGAAGACCCAAACAAACTTCGCTAATACAAGCATTATCGCTGCTGTCCGT ATGTGTTTTGCCAGGGCTACGACTTCTCCGACTTCTTCGACACGAGCACC ATGAAGTCCGGCCCCAAGGGCACCGCAGCTTCCGAGGAGGAAAAGAGCAA GACCACCCGCGTCGAGGGCTTCGAGCTGTTCGAGAAGGGTGACATCCACC TGCAACCAGGCTTTGACCCGCCCGTGGCGGTGAAGAAGATCCTCGTGGAG CGAGAGGAGAGGCTCAAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAAGA AGAGACGAAGCACGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19339:850..2968-

>mRNA_Ecto-sp13_S_contig19339.6201.1 ID=mRNA_Ecto-sp13_S_contig19339.6201.1|Name=mRNA_Ecto-sp13_S_contig19339.6201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19339:850..2968- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATCGTGGGAGAGGAGTACCGGTTGAGTATGTCCGGGTACCTGTT
CGTGAAGCGCAAGGACATGTTCCGCGACGCCGTGTTCAAGTGCCGGGGCT
TCGCCGGGTCCCCTGTTGGTGAAGCGAAAGTCCTTGTCCCCGGCCGCTGT
GTTCACGTGGCGGGCGTCCTCCACGAGGGCGACGACTACAAAAAGGTCTG
GACGGCGTTCACGTCGTTCTACACGTTCGACCAGGAGTTCACAGAGGAGG
AGATGAGGATATTGGCCATGCAGTGGTGCAACGGAGAGGTCGGGATGGGG
GAGTCGTCCCAGTCGAGCAGCCCGCTCGACCCCACCTTCTGGTCCATGCA
CCCGACCATGGAACGACTCTTAGTTTTCAAGCTCCTAGCTGGAACTTTCA
CTGACTACTCTTGGCCCGACGAAGTGGGGTCGTGGGTTGGCATGGACGGT
GTGGAGTACGACGTCATCATCTCGACGCGCTCTGATACGTGCAACGGTCA
CCGAGGCAGCGACATCTTCCCGTACGACATCATGACCGACGTTATCACGC
CGCAGTTCACCTTCTACGGCAAGAAGGCCCCGAACACGATGAAAAACCGG
ATGCTTATCAAGCTCTTCGACCCTAGCGAGAACGCCCTGCCCTTCATCTA
CGACAACTTCGAGTGGTCGCACTGCTCCGAAATGGGCTACGACTTCTCCG
ACTTCTTCGACACGAGCACCATGAAGTCCGGCCCCAAGGGCACCGCAGCT
TCCGAGGAGGAAAAGAGCAAGACCACCCGCGTCGAGGGCTTCGAGCTGTT
CGAGAAGGGTGACATCCACCTGCAACCAGGCTTTGACCCGCCCGTGGCGG
TGAAGAAGATCCTCGTGGAGCGAGAGGAGAGGCTCAAGCAGCAGCAGCAG
CAGCAGCAACAGCAGCAAGAAGAGACGAAGCACGTCTAA
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