mRNA_Ecto-sp13_S_contig19330.6200.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19330.6200.1
Unique NamemRNA_Ecto-sp13_S_contig19330.6200.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A6H5KRG7_9PHAE (GP-PDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRG7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.420e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 126
            HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE
Sbjct:  128 HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 169          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: UPI0015BF9F79 (glycerophosphodiester phosphodiesterase n=3 Tax=Paenarthrobacter nitroguajacolicus TaxID=211146 RepID=UPI0015BF9F79)

HSP 1 Score: 51.2 bits (121), Expect = 2.560e-6
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 126
            H  GNT+ SF+EA+RLGVD IE DV  TSDG +   HD +I+
Sbjct:   13 HRHGNTLASFVEALRLGVDAIEVDVWLTSDGQLALRHDAVID 54          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A2E5ZV33_9EURY (GP-PDE domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5ZV33_9EURY)

HSP 1 Score: 49.7 bits (117), Expect = 8.040e-6
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1
Query:   13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLI 123
            N +    EA+ LGVD+IEFDV +T DGV++CHHD  +
Sbjct:   19 NVLTGIQEAIELGVDMIEFDVRSTKDGVLVCHHDSTV 55          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A2V7ELW2_9BACT (GP-PDE domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7ELW2_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 1.120e-5
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1
Query:   13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLI 123
            N++P+FL A+ LG D IE DV  T DG+V+ HHD L+
Sbjct:   30 NSIPAFLRAIELGADAIELDVHATRDGIVVVHHDELV 66          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A7G7W7D1_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Hymenobacter sp. S2-20-2 TaxID=2761579 RepID=A0A7G7W7D1_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1
Query:   13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDP 117
            NT+P FL AVRLGVDV+E DV+ ++DG V+  H+P
Sbjct:   26 NTLPGFLHAVRLGVDVLELDVVLSADGQVVVSHEP 60          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: UPI001C73569E (glycerophosphodiester phosphodiesterase n=1 Tax=Hymenobacter sp. HSC-4F20 TaxID=2864135 RepID=UPI001C73569E)

HSP 1 Score: 48.9 bits (115), Expect = 1.750e-5
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDP 117
            NT+P+FL A+RLGVDVIE DV+ ++DG V+  H+P
Sbjct:   24 NTLPAFLHALRLGVDVIELDVVISADGRVVVSHEP 58          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A2H0P5L7_9DELT (GP-PDE domain-containing protein n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13 TaxID=1973976 RepID=A0A2H0P5L7_9DELT)

HSP 1 Score: 48.5 bits (114), Expect = 2.250e-5
Identity = 21/37 (56.76%), Postives = 32/37 (86.49%), Query Frame = 1
Query:   13 NTMPSFLEAVRLGVDVIEFDVLTTSDGV-VICHHDPL 120
            N++PSF++AV LGVD +EFD+L+T+DG+ ++CH D L
Sbjct:   21 NSIPSFIKAVELGVDGVEFDLLSTADGLPIVCHDDNL 57          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A7X2PB89_9SPIO (Glycerophosphodiester phosphodiesterase n=1 Tax=Bullifex porci TaxID=2606638 RepID=A0A7X2PB89_9SPIO)

HSP 1 Score: 48.5 bits (114), Expect = 2.350e-5
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 126
            NT+P+FL AV++ +D++E DV  T DGV++  HDP +E
Sbjct:   26 NTLPAFLSAVKMNIDIVETDVHLTKDGVLVIWHDPTLE 63          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A1M6Q7K9_9BACT (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Hymenobacter psychrotolerans DSM 18569 TaxID=1121959 RepID=A0A1M6Q7K9_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 3.310e-5
Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDP 117
            NT+P+FL AV+LGVDV+E DV+ ++DG V+  H+P
Sbjct:   26 NTLPAFLHAVQLGVDVLELDVVLSADGQVVVSHEP 60          
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A7W0ZKY1_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W0ZKY1_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 3.350e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 126
            NT+P+F  AV LGVDV+E DV +TSDGV++  HD  ++
Sbjct:   57 NTLPAFRHAVALGVDVLEMDVRSTSDGVLVLMHDQTVD 94          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRG7_9PHAE1.420e-19100.00GP-PDE domain-containing protein n=2 Tax=Ectocarpu... [more]
UPI0015BF9F792.560e-657.14glycerophosphodiester phosphodiesterase n=3 Tax=Pa... [more]
A0A2E5ZV33_9EURY8.040e-654.05GP-PDE domain-containing protein n=1 Tax=Euryarcha... [more]
A0A2V7ELW2_9BACT1.120e-554.05GP-PDE domain-containing protein n=1 Tax=Gemmatimo... [more]
A0A7G7W7D1_9BACT1.280e-560.00Glycerophosphodiester phosphodiesterase n=1 Tax=Hy... [more]
UPI001C73569E1.750e-560.00glycerophosphodiester phosphodiesterase n=1 Tax=Hy... [more]
A0A2H0P5L7_9DELT2.250e-556.76GP-PDE domain-containing protein n=1 Tax=Deltaprot... [more]
A0A7X2PB89_9SPIO2.350e-550.00Glycerophosphodiester phosphodiesterase n=1 Tax=Bu... [more]
A0A1M6Q7K9_9BACT3.310e-557.14Glycerophosphoryl diester phosphodiesterase n=1 Ta... [more]
A0A7W0ZKY1_9BACT3.350e-555.26Glycerophosphodiester phosphodiesterase n=1 Tax=Py... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19330contigEcto-sp13_S_contig19330:4..129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462982.9726954-CDS-Ecto-sp13_S_contig19330:3..1111681462982.9726954-CDS-Ecto-sp13_S_contig19330:3..111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19330 4..111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462982.9828553-UTR-Ecto-sp13_S_contig19330:111..1291681462982.9828553-UTR-Ecto-sp13_S_contig19330:111..129Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19330 112..129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19330.6200.1prot_Ecto-sp13_S_contig19330.6200.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19330 4..111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19330.6200.1

>prot_Ecto-sp13_S_contig19330.6200.1 ID=prot_Ecto-sp13_S_contig19330.6200.1|Name=mRNA_Ecto-sp13_S_contig19330.6200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE
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mRNA from alignment at Ecto-sp13_S_contig19330:4..129-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19330.6200.1 ID=mRNA_Ecto-sp13_S_contig19330.6200.1|Name=mRNA_Ecto-sp13_S_contig19330.6200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19330:4..129- (Ectocarpus species13 EcNAP12_S_4_19m)
CATGTGGAGGGCAACACGATGCCGTCGTTCCTGGAGGCCGTCAGGCTTGG CGTGGATGTGATCGAGTTCGACGTCCTCACGACCTCGGATGGGGTCGTTA TCTGCCATCACGACCCCCTCATCGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19330:4..129-

>mRNA_Ecto-sp13_S_contig19330.6200.1 ID=mRNA_Ecto-sp13_S_contig19330.6200.1|Name=mRNA_Ecto-sp13_S_contig19330.6200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19330:4..129- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTCGTTCCTGGAGGCCGTCAGGCTTGGCGTGGATGTGATCGAGTT
CGACGTCCTCACGACCTCGGATGGGGTCGTTATCTGCCATCACGACCCCC
TCATCGAA
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