mRNA_Ecto-sp13_S_contig19330.6200.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A6H5KRG7_9PHAE (GP-PDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRG7_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.420e-19 Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query: 1 HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 126
HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE
Sbjct: 128 HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 169
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: UPI0015BF9F79 (glycerophosphodiester phosphodiesterase n=3 Tax=Paenarthrobacter nitroguajacolicus TaxID=211146 RepID=UPI0015BF9F79) HSP 1 Score: 51.2 bits (121), Expect = 2.560e-6 Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 1 HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 126
H GNT+ SF+EA+RLGVD IE DV TSDG + HD +I+
Sbjct: 13 HRHGNTLASFVEALRLGVDAIEVDVWLTSDGQLALRHDAVID 54
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A2E5ZV33_9EURY (GP-PDE domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5ZV33_9EURY) HSP 1 Score: 49.7 bits (117), Expect = 8.040e-6 Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1
Query: 13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLI 123
N + EA+ LGVD+IEFDV +T DGV++CHHD +
Sbjct: 19 NVLTGIQEAIELGVDMIEFDVRSTKDGVLVCHHDSTV 55
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A2V7ELW2_9BACT (GP-PDE domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7ELW2_9BACT) HSP 1 Score: 49.3 bits (116), Expect = 1.120e-5 Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1
Query: 13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLI 123
N++P+FL A+ LG D IE DV T DG+V+ HHD L+
Sbjct: 30 NSIPAFLRAIELGADAIELDVHATRDGIVVVHHDELV 66
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A7G7W7D1_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Hymenobacter sp. S2-20-2 TaxID=2761579 RepID=A0A7G7W7D1_9BACT) HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5 Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1
Query: 13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDP 117
NT+P FL AVRLGVDV+E DV+ ++DG V+ H+P
Sbjct: 26 NTLPGFLHAVRLGVDVLELDVVLSADGQVVVSHEP 60
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: UPI001C73569E (glycerophosphodiester phosphodiesterase n=1 Tax=Hymenobacter sp. HSC-4F20 TaxID=2864135 RepID=UPI001C73569E) HSP 1 Score: 48.9 bits (115), Expect = 1.750e-5 Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDP 117
NT+P+FL A+RLGVDVIE DV+ ++DG V+ H+P
Sbjct: 24 NTLPAFLHALRLGVDVIELDVVISADGRVVVSHEP 58
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A2H0P5L7_9DELT (GP-PDE domain-containing protein n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13 TaxID=1973976 RepID=A0A2H0P5L7_9DELT) HSP 1 Score: 48.5 bits (114), Expect = 2.250e-5 Identity = 21/37 (56.76%), Postives = 32/37 (86.49%), Query Frame = 1
Query: 13 NTMPSFLEAVRLGVDVIEFDVLTTSDGV-VICHHDPL 120
N++PSF++AV LGVD +EFD+L+T+DG+ ++CH D L
Sbjct: 21 NSIPSFIKAVELGVDGVEFDLLSTADGLPIVCHDDNL 57
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A7X2PB89_9SPIO (Glycerophosphodiester phosphodiesterase n=1 Tax=Bullifex porci TaxID=2606638 RepID=A0A7X2PB89_9SPIO) HSP 1 Score: 48.5 bits (114), Expect = 2.350e-5 Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 126
NT+P+FL AV++ +D++E DV T DGV++ HDP +E
Sbjct: 26 NTLPAFLSAVKMNIDIVETDVHLTKDGVLVIWHDPTLE 63
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A1M6Q7K9_9BACT (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Hymenobacter psychrotolerans DSM 18569 TaxID=1121959 RepID=A0A1M6Q7K9_9BACT) HSP 1 Score: 48.1 bits (113), Expect = 3.310e-5 Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDP 117
NT+P+FL AV+LGVDV+E DV+ ++DG V+ H+P
Sbjct: 26 NTLPAFLHAVQLGVDVLELDVVLSADGQVVVSHEP 60
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Match: A0A7W0ZKY1_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W0ZKY1_9BACT) HSP 1 Score: 48.1 bits (113), Expect = 3.350e-5 Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 13 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIE 126
NT+P+F AV LGVDV+E DV +TSDGV++ HD ++
Sbjct: 57 NTLPAFRHAVALGVDVLEMDVRSTSDGVLVLMHDQTVD 94 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19330.6200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19330.6200.1 >prot_Ecto-sp13_S_contig19330.6200.1 ID=prot_Ecto-sp13_S_contig19330.6200.1|Name=mRNA_Ecto-sp13_S_contig19330.6200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp MPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEback to top mRNA from alignment at Ecto-sp13_S_contig19330:4..129- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19330.6200.1 ID=mRNA_Ecto-sp13_S_contig19330.6200.1|Name=mRNA_Ecto-sp13_S_contig19330.6200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19330:4..129- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19330:4..129- >mRNA_Ecto-sp13_S_contig19330.6200.1 ID=mRNA_Ecto-sp13_S_contig19330.6200.1|Name=mRNA_Ecto-sp13_S_contig19330.6200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19330:4..129- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |