mRNA_Ecto-sp13_S_contig19323.6198.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: D7FWW4_ECTSI (Protein required for templated centriole assembly n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW4_ECTSI) HSP 1 Score: 186 bits (471), Expect = 2.580e-54 Identity = 137/144 (95.14%), Postives = 139/144 (96.53%), Query Frame = 1
Query: 1 AAGSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSS-GSVFVDLLTYADLELLKARRVGS-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
AAGSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAK+FPVFVKMLLAALGHDSSSS GSVFVDLLTYADLELLKARRVGS +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NKRYLILTYAAEYDRVHYPLPL
Sbjct: 29 AAGSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKRFPVFVKMLLAALGHDSSSSSGSVFVDLLTYADLELLKARRVGSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKRYLILTYAAEYDRVHYPLPL 172
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: A0A836CMQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ7_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.640e-30 Identity = 77/141 (54.61%), Postives = 87/141 (61.70%), Query Frame = 1
Query: 4 AGSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
+ LRVE ETEDG RW G+F + YVE I++KTG+ K+F VFV+ML AL + S SVFVDLLTYADLE LKARR G XXXXXXXX N KRYLILTYA E+DRVHYPLPL
Sbjct: 37 SNDVLRVEAETEDGMDRWWGDFASSYVEDISRKTGNFKRFEVFVQMLSTAL---AQRSDSVFVDLLTYADLEALKARRAGGQAPAXXXXXXXXR-----------------------ANTKRYLILTYAVEFDRVHYPLPL 151
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: CCD61_CHLRE (Variable flagella 3 n=3 Tax=Chlamydomonas TaxID=3052 RepID=CCD61_CHLRE) HSP 1 Score: 124 bits (310), Expect = 2.930e-30 Identity = 71/140 (50.71%), Postives = 83/140 (59.29%), Query Frame = 1
Query: 7 GSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
G TL VEVE + SRW G+F +RY+E IT KTG+ KKFPVFVKMLL+AL +S SVFVDLLTY DLE+LK+R+ G NNKRYLI+TYAAE+DRVHYPLPL
Sbjct: 26 GETLCVEVEQKSDCSRWRGDFTSRYIEDITAKTGNFKKFPVFVKMLLSAL---KQASDSVFVDLLTYQDLEVLKSRKAGGQAPPPRTQPP---------------------------NNKRYLIMTYAAEFDRVHYPLPL 135
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: A0A150G4X0_GONPE (VFL3 protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G4X0_GONPE) HSP 1 Score: 122 bits (306), Expect = 3.310e-30 Identity = 70/140 (50.00%), Postives = 83/140 (59.29%), Query Frame = 1
Query: 7 GSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
G TL +EVE + SRW G+F +RY+E IT KTG+ KKFPVFVKMLL+AL +S SVFVDLLTY DLE+LK+R+ G NNKRYLI+TYAAE+DRVHYPLPL
Sbjct: 25 GETLCLEVEQKSDCSRWRGDFTSRYIEDITAKTGNFKKFPVFVKMLLSAL---KQASESVFVDLLTYQDLEVLKSRKAGGQAAPPRTQAP---------------------------NNKRYLIMTYAAEFDRVHYPLPL 134
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: A0A7R9Z052_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z052_9CHLO) HSP 1 Score: 116 bits (291), Expect = 1.820e-29 Identity = 68/140 (48.57%), Postives = 80/140 (57.14%), Query Frame = 1
Query: 7 GSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
G TL VE+E SRW G+F ARY+E IT KTG+ KKF VFVKMLL+A+ +S SVFVDLLTY DLE+LK R++ +NKRYLILTYAAE+DRVHYPLPL
Sbjct: 124 GETLAVEIEAHADASRWRGDFSARYIEDITAKTGNFKKFGVFVKMLLSAV---KQASDSVFVDLLTYQDLEVLKTRKLQEQGAAPPPARPALAP-----------------------SNKRYLILTYAAEFDRVHYPLPL 237
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: A0A8J4B621_9CHLO (Uncharacterized protein n=5 Tax=Volvox TaxID=3066 RepID=A0A8J4B621_9CHLO) HSP 1 Score: 120 bits (302), Expect = 3.740e-29 Identity = 69/138 (50.00%), Postives = 83/138 (60.14%), Query Frame = 1
Query: 13 TLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
TL +EVE + SRW G+F +RY+E IT KTG+ KKFPVFVKMLL+AL +S SVFVDLLTY DLE+LK+R+ G+ NNKRYLI+TYAAE+DRVHYPLPL
Sbjct: 27 TLCLEVEQKSDCSRWRGDFTSRYIEDITAKTGNFKKFPVFVKMLLSAL---KQASDSVFVDLLTYQDLEVLKSRKAGNQVAPQRANPP---------------------------NNKRYLIMTYAAEFDRVHYPLPL 134
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: D8UIW0_VOLCA (Uncharacterized protein Vfl3 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UIW0_VOLCA) HSP 1 Score: 120 bits (302), Expect = 3.740e-29 Identity = 69/138 (50.00%), Postives = 83/138 (60.14%), Query Frame = 1
Query: 13 TLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
TL +EVE + SRW G+F +RY+E IT KTG+ KKFPVFVKMLL+AL +S SVFVDLLTY DLE+LK+R+ G+ NNKRYLI+TYAAE+DRVHYPLPL
Sbjct: 26 TLCLEVEQKSDCSRWRGDFTSRYIEDITAKTGNFKKFPVFVKMLLSAL---KQASDSVFVDLLTYQDLEVLKSRKAGNQAPPPRTQAP---------------------------NNKRYLIMTYAAEFDRVHYPLPL 133
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: A0A7S1CEB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEB7_9STRA) HSP 1 Score: 114 bits (284), Expect = 4.670e-29 Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = 1
Query: 4 AGSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
AG ++ +++E E +RW G F ARYVE +T+KTG+ K+FPVF+KML+AA+ +S S VF+DLLTYADLE+L+AR+ G + NN+RYLILTYA E+DRVHYPL L
Sbjct: 26 AGDSVSIDLEHETEGTRWSGVFSARYVEEVTRKTGNFKRFPVFLKMLVAAVNRESDS---VFIDLLTYADLEVLRARKEGHTAAHGSAASVSSVRH----------------------NNRRYLILTYAVEWDRVHYPLQL 141
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: A0A7S0WPM5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WPM5_9CHLO) HSP 1 Score: 112 bits (280), Expect = 8.830e-29 Identity = 67/138 (48.55%), Postives = 79/138 (57.25%), Query Frame = 1
Query: 13 TLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
TL VEVE + +RW G+F +RY+E IT KTG+ KK+ VFVKMLL A+ +S S VFVDLLTY DLELLK R++ NNKRYLILTYAAE+DRVHYPLPL
Sbjct: 33 TLCVEVEQKSDGARWRGDFTSRYIEDITAKTGNYKKYGVFVKMLLTAVTEESDS---VFVDLLTYNDLELLKNRKMRGQAAPPSRNPP---------------------------NNKRYLILTYAAEFDRVHYPLPL 140
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Match: A0A061SME1_9CHLO (Coiled-coil domain-containing protein 61 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SME1_9CHLO) HSP 1 Score: 118 bits (295), Expect = 1.360e-28 Identity = 66/140 (47.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query: 7 GSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAALGHDSSSSGSVFVDLLTYADLELLKARRVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNKRYLILTYAAEYDRVHYPLPL 426
G L +EVE + +RW G+F ++Y+E IT KTG+ KK+PVFV+MLL+AL S SVFVDLLTYADLE+LKAR+ ++ NNKRYLILTYAAE+DRVH+PLPL
Sbjct: 35 GENLTIEVECKHDANRWRGDFTSKYIEDITSKTGNFKKYPVFVRMLLSAL---KQGSDSVFVDLLTYADLEMLKARKEKANGASSQRPFP--------------------------ANNKRYLILTYAAEFDRVHFPLPL 145 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19323.6198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19323.6198.1 >prot_Ecto-sp13_S_contig19323.6198.1 ID=prot_Ecto-sp13_S_contig19323.6198.1|Name=mRNA_Ecto-sp13_S_contig19323.6198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp AAGSTLRVEVETEDGKSRWCGEFPARYVEGITQKTGSAKKFPVFVKMLLAback to top mRNA from alignment at Ecto-sp13_S_contig19323:53..2090- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19323.6198.1 ID=mRNA_Ecto-sp13_S_contig19323.6198.1|Name=mRNA_Ecto-sp13_S_contig19323.6198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19323:53..2090- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19323:53..2090- >mRNA_Ecto-sp13_S_contig19323.6198.1 ID=mRNA_Ecto-sp13_S_contig19323.6198.1|Name=mRNA_Ecto-sp13_S_contig19323.6198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19323:53..2090- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |