mRNA_Ecto-sp13_S_contig19315.6197.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19315.6197.1
Unique NamemRNA_Ecto-sp13_S_contig19315.6197.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19315.6197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19315contigEcto-sp13_S_contig19315:81..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size419
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462982.7113106-UTR-Ecto-sp13_S_contig19315:80..1041681462982.7113106-UTR-Ecto-sp13_S_contig19315:80..104Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19315 81..104 +
1681462982.736798-UTR-Ecto-sp13_S_contig19315:511..5491681462982.736798-UTR-Ecto-sp13_S_contig19315:511..549Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19315 512..549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462982.720546-CDS-Ecto-sp13_S_contig19315:104..2201681462982.720546-CDS-Ecto-sp13_S_contig19315:104..220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19315 105..220 +
1681462982.7285917-CDS-Ecto-sp13_S_contig19315:270..5111681462982.7285917-CDS-Ecto-sp13_S_contig19315:270..511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19315 271..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19315.6197.1prot_Ecto-sp13_S_contig19315.6197.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19315 105..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19315.6197.1

>prot_Ecto-sp13_S_contig19315.6197.1 ID=prot_Ecto-sp13_S_contig19315.6197.1|Name=mRNA_Ecto-sp13_S_contig19315.6197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MLQSCADWAGESVVFRQGLMLQSCADWAGESVVFRQGLIVDASDVCRLGR
QECRVQTRVDASVVCRLWAGESYQLNRVQTMFPLPQRSCSDPGQKLRKHG
LVSSLTGDKKRPGSVCLL*
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mRNA from alignment at Ecto-sp13_S_contig19315:81..549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19315.6197.1 ID=mRNA_Ecto-sp13_S_contig19315.6197.1|Name=mRNA_Ecto-sp13_S_contig19315.6197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=469bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19315:81..549+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGTCGTGTTCAGACAAGGGTTGATGCTTCAGTCGTGTGCAGACTGGGC
AGGCGAAAGTGTCGTGTTCAGACAAGGGTTGATGCTTCAGTCGTGTGCAG
ACTGGGCAGGCGAAAGTGTCGTATTCAGACAAGGGTTGATGCTTCAGTCG
TGTGCAGACTGGGCAGGCGAGAGTGTCGTGTTCAGACAAGAGTTGATGCT
TCGGATGTGTGCAGACTGGGCAGGCAAGAGTGTCGTGTTCAGACAAGGGT
TGATGCTTCAGTCGTGTGCAGACTCTGGGCAGGCGAGAGTTACCAATTGA
ATCGCGTTCAGACTATGTTCCCCCTGCCACAGAGGTCGTGTTCAGACCCT
GGACAGAAGCTTCGGAAACACGGGCTTGTTTCCTCTCTCACCGGCGATAA
AAAACGACCTGGTTCTGTTTGTCTTCTGTAGACCGCCAGCAGTGACATGA
TGGTTGAAGCTTCAACCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19315:81..549+

>mRNA_Ecto-sp13_S_contig19315.6197.1 ID=mRNA_Ecto-sp13_S_contig19315.6197.1|Name=mRNA_Ecto-sp13_S_contig19315.6197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19315:81..549+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCAGTCGTGTGCAGACTGGGCAGGCGAAAGTGTCGTGTTCAGACA
AGGGTTGATGCTTCAGTCGTGTGCAGACTGGGCAGGCGAAAGTGTCGTAT
TCAGACAAGGGTTGATAGTTGATGCTTCGGATGTGTGCAGACTGGGCAGG
CAAGAGTGTCGTGTTCAGACAAGGGTTGATGCTTCAGTCGTGTGCAGACT
CTGGGCAGGCGAGAGTTACCAATTGAATCGCGTTCAGACTATGTTCCCCC
TGCCACAGAGGTCGTGTTCAGACCCTGGACAGAAGCTTCGGAAACACGGG
CTTGTTTCCTCTCTCACCGGCGATAAAAAACGACCTGGTTCTGTTTGTCT
TCTGTAG
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