mRNA_Ecto-sp13_S_contig19313.6196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19313.6196.1
Unique NamemRNA_Ecto-sp13_S_contig19313.6196.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19313.6196.1 vs. uniprot
Match: D7FKG0_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG0_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 1.710e-118
Identity = 176/186 (94.62%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 NGNTFNNWSAFNEFEVCGEEVESNALFSGVKAAKKKLAQLEGDSVCVEPVKLAVQNAHVTDSSDSNNVKSIFDLNFHTWWASANTQNEDPMENAKIRLRFQGDQKVSYVKIAFFDGHLASYHMDLYKRAAADTEWTGVLTGQVVEAVSTFQTFTIEETGVNVLYIVGLGNDVGDKFKVSEVEVYGC 558
            NGNTFNNWSAFNEFEVCGEEVESNALFSG++AAKKKLAQLEGDSVCVEPVKLAVQNAHVTDSSDSNNV+SIFDLNFHTWWASANTQNE+PMENAKIRL FQGDQ VSYVKIAFFDGHLASYHMDLYKRAAA+ EWT VLTGQVVEAVSTFQTFTIEETGVNVLYIVGLGNDVG+KFKVSEVEVYGC
Sbjct:  581 NGNTFNNWSAFNEFEVCGEEVESNALFSGIRAAKKKLAQLEGDSVCVEPVKLAVQNAHVTDSSDSNNVRSIFDLNFHTWWASANTQNENPMENAKIRLHFQGDQNVSYVKIAFFDGHLASYHMDLYKRAAANKEWTSVLTGQVVEAVSTFQTFTIEETGVNVLYIVGLGNDVGNKFKVSEVEVYGC 766
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BLAST of mRNA_Ecto-sp13_S_contig19313.6196.1 vs. uniprot
Match: A0A6H5KWV6_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV6_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 8.150e-46
Identity = 92/186 (49.46%), Postives = 116/186 (62.37%), Query Frame = 1 
Query:    4 GNTFNNWSAFNEFEVCGEEVE-SNALFSGVKAAKKKLAQLEGDSVCVEPVKLAVQNAHVTDSSDSNNVKSIFDLNFHTWWASANTQNEDPMENAKIRLRFQGDQKVSYVKIAFFDGHLASYHMDLYKRAAADTEWTGVLTGQVVEAVSTFQTFTIEETGVNVLYIVGLGNDVGDKFKVSEVEVYGC 558
            GN+FNNWSAF E EVC E  E SNALF G++A   +L  L G  VC  PVKLA  N H   +S  +NVK +FD NF T W++ NTQN   + N K+   F GD +VS V+I+F+DG LA  +  +Y + A+D  WT VL  +        QTFT+E  GV+ LY+VG GNDVG   K SE+ VYGC
Sbjct:  503 GNSFNNWSAFTELEVCVEAAEESNALFGGLQALDSELEALAG-GVCDAPVKLAPVNVH---ASGEDNVKVVFDGNFDTRWSTTNTQNASDLSNDKVIFTFGGDMRVSTVQISFYDGDLAHQYFSIYTQRASDRSWTPVLLKEQAAMNVALQTFTLEVDGVHKLYVVGNGNDVGAYSKFSEIAVYGC 684
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BLAST of mRNA_Ecto-sp13_S_contig19313.6196.1 vs. uniprot
Match: A0A6H5KRG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.610e-45
Identity = 83/182 (45.60%), Postives = 117/182 (64.29%), Query Frame = 1 
Query:   13 FNNWSAFNEFEVCGEEVESNALFSGVKAAKKKLAQLEGDSVCVEPVKLAVQNAHVTDSSDSNNVKSIFDLNFHTWWASANTQNEDPMENAKIRLRFQGDQKVSYVKIAFFDGHLASYHMDLYKRAAADTEWTGVLTGQVVEAVSTFQTFTIEETGVNVLYIVGLGNDVGDKFKVSEVEVYGC 558
            FNNW+AF E EVC +  E+NALF G++A +++L  L G+ VC  P KL    A  + S D   V+ +FD N+ TWW++ NTQ+E  + N  ++L F GD +VS++ IAFFDGHLA  +  +Y ++A    WT V+  +        QTF+I+  GV+ +Y+VG GNDVG   K+SEVEVYGC
Sbjct:  529 FNNWTAFTEVEVCAKSAETNALFGGIEAIREELGMLAGE-VCSAPTKLVPTGAKASRSDD---VRVLFDGNYETWWSTINTQSESDLSNDMVQLTFAGDTRVSFLNIAFFDGHLAHQYFFVYVQSAHAYTWTPVMLNEQAATQVGMQTFSIDLDGVHKIYVVGKGNDVGAYSKLSEVEVYGC 706
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BLAST of mRNA_Ecto-sp13_S_contig19313.6196.1 vs. uniprot
Match: D7FRK8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK8_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.580e-42
Identity = 86/186 (46.24%), Postives = 115/186 (61.83%), Query Frame = 1 
Query:    4 GNTFNNWSAFNEFEVCGEEV-ESNALFSGVKAAKKKLAQLEGDSVCVEPVKLAVQNAHVTDSSDSNNVKSIFDLNFHTWWASANTQNEDPMENAKIRLRFQGDQKVSYVKIAFFDGHLASYHMDLYKRAAADTEWTGVLTGQVVEAVSTFQTFTIEETGVNVLYIVGLGNDVGDKFKVSEVEVYGC 558
            GN+FNNWSAF E EVC E   ESNALF G++A   +L  L G +VC  P KL+  + H +   D   V+ +FD NF T W++ NTQNE  + N K+   F GD  VS V+I+F+DG LA     +Y ++A+D  WT VL  +        QTFT++  GV+ LY+VG GN+VG   K SE+EV+GC
Sbjct:  544 GNSFNNWSAFTELEVCVEAAAESNALFGGLQALDSELEALAG-AVCDAPAKLSPVSVHASGQDD---VRVVFDGNFDTRWSTTNTQNESDLSNDKVIFTFGGDMMVSTVQISFYDGDLAHQIFSIYTQSASDRSWTPVLLEEHAARDVALQTFTLDMDGVHKLYVVGKGNEVGAYSKFSEIEVHGC 725
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19313.6196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKG0_ECTSI1.710e-11894.62FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KWV6_9PHAE8.150e-4649.46F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KRG5_9PHAE2.610e-4545.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRK8_ECTSI2.580e-4246.24FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19313contigEcto-sp13_S_contig19313:2..1082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size561
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionGalactose-binding domain
Ec32 orthologEc-12_002200.1
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462982.658386-CDS-Ecto-sp13_S_contig19313:1..211681462982.658386-CDS-Ecto-sp13_S_contig19313:1..21Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19313 2..21 +
1681462982.676002-CDS-Ecto-sp13_S_contig19313:541..10821681462982.676002-CDS-Ecto-sp13_S_contig19313:541..1082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19313 542..1082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19313.6196.1prot_Ecto-sp13_S_contig19313.6196.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19313 2..1082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19313.6196.1

>prot_Ecto-sp13_S_contig19313.6196.1 ID=prot_Ecto-sp13_S_contig19313.6196.1|Name=mRNA_Ecto-sp13_S_contig19313.6196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
NGNTFNNWSAFNEFEVCGEEVESNALFSGVKAAKKKLAQLEGDSVCVEPV
KLAVQNAHVTDSSDSNNVKSIFDLNFHTWWASANTQNEDPMENAKIRLRF
QGDQKVSYVKIAFFDGHLASYHMDLYKRAAADTEWTGVLTGQVVEAVSTF
QTFTIEETGVNVLYIVGLGNDVGDKFKVSEVEVYGC*
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mRNA from alignment at Ecto-sp13_S_contig19313:2..1082+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19313.6196.1 ID=mRNA_Ecto-sp13_S_contig19313.6196.1|Name=mRNA_Ecto-sp13_S_contig19313.6196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1081bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19313:2..1082+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGCAACACGTTCAACAAGTAAGGCTTTCGCTTCTTCCTCTTCCGTGC
CGTGCTGAAACAAACACAAAATTACAGCCTTGGATAATTCGGCGTGTCAA
AAACAAGTTTGATGTTGTAGAAGGTTTGATGTTGTAGAAGGTTGTTGTTC
TCTCGTGCGTGTGCTGTGTGGTAAAAAAAAAGAAAACATTCGATTTTGGT
CTGTCTTGGCGGTGGGGCAGTTGTTTAGTTCGTTGGCTCCATTTGTTTTA
AGAGGTGGTTGAGAGCGAAAACAAGAGCTTCTAGCCTGTTGGCCACATGC
TCACCGCAACAATATAGCTTCTGTGATTTTGTGCTCCCTGCACAATCTAG
TTCTTTGTAAGCAATCAGTTCTAGCGCCCCGTACGCCAGCAGAGCGGGAG
TCCTTCCATACGCCAAACTTACCCCCCGAAACCCCCCGTTAGCTCAGGAC
AACTTTTGTACTGATTCCCTTCTCTCATTCCCCCTGTTTTGGCCTCAATC
CCCTCCCCCCCCCCTGCCTCCCTTCGATATCAACAAGCAGTTGGTCTGCC
TTTAACGAGTTCGAGGTCTGCGGGGAGGAAGTGGAGTCCAACGCCCTCTT
TTCGGGAGTCAAAGCGGCCAAGAAGAAGCTCGCGCAGCTCGAGGGCGACT
CGGTGTGCGTCGAGCCCGTGAAGCTAGCCGTGCAGAACGCCCACGTCACC
GACAGCAGCGATTCCAACAACGTCAAGTCGATCTTCGACCTCAACTTCCA
CACCTGGTGGGCGTCCGCAAACACACAGAACGAGGACCCCATGGAGAACG
CCAAGATCAGGCTGCGTTTCCAGGGGGACCAGAAGGTGTCGTACGTCAAG
ATCGCCTTCTTTGACGGGCACTTGGCCAGCTACCACATGGACTTGTACAA
GAGGGCCGCGGCCGATACGGAGTGGACAGGCGTTCTGACGGGGCAGGTGG
TCGAAGCCGTGTCCACGTTCCAGACTTTCACCATCGAGGAGACGGGGGTC
AACGTCTTGTACATCGTTGGCCTGGGGAACGACGTCGGGGACAAGTTTAA
GGTTTCCGAGGTCGAGGTTTACGGTTGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19313:2..1082+

>mRNA_Ecto-sp13_S_contig19313.6196.1 ID=mRNA_Ecto-sp13_S_contig19313.6196.1|Name=mRNA_Ecto-sp13_S_contig19313.6196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19313:2..1082+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGCAACACGTTCAACAATTGGTCTGCCTTTAACGAGTTCGAGGTCTG
CGGGGAGGAAGTGGAGTCCAACGCCCTCTTTTCGGGAGTCAAAGCGGCCA
AGAAGAAGCTCGCGCAGCTCGAGGGCGACTCGGTGTGCGTCGAGCCCGTG
AAGCTAGCCGTGCAGAACGCCCACGTCACCGACAGCAGCGATTCCAACAA
CGTCAAGTCGATCTTCGACCTCAACTTCCACACCTGGTGGGCGTCCGCAA
ACACACAGAACGAGGACCCCATGGAGAACGCCAAGATCAGGCTGCGTTTC
CAGGGGGACCAGAAGGTGTCGTACGTCAAGATCGCCTTCTTTGACGGGCA
CTTGGCCAGCTACCACATGGACTTGTACAAGAGGGCCGCGGCCGATACGG
AGTGGACAGGCGTTCTGACGGGGCAGGTGGTCGAAGCCGTGTCCACGTTC
CAGACTTTCACCATCGAGGAGACGGGGGTCAACGTCTTGTACATCGTTGG
CCTGGGGAACGACGTCGGGGACAAGTTTAAGGTTTCCGAGGTCGAGGTTT
ACGGTTGCTAG
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