mRNA_Ecto-sp13_S_contig1929.6182.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1929.6182.1
Unique NamemRNA_Ecto-sp13_S_contig1929.6182.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1929.6182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1929contigEcto-sp13_S_contig1929:1856..2347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size492
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462981.0794055-UTR-Ecto-sp13_S_contig1929:1855..18611681462981.0794055-UTR-Ecto-sp13_S_contig1929:1855..1861Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1929 1856..1861 +
1681462981.1079288-UTR-Ecto-sp13_S_contig1929:2236..23471681462981.1079288-UTR-Ecto-sp13_S_contig1929:2236..2347Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1929 2237..2347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462981.0935135-CDS-Ecto-sp13_S_contig1929:1861..22361681462981.0935135-CDS-Ecto-sp13_S_contig1929:1861..2236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1929 1862..2236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1929.6182.1prot_Ecto-sp13_S_contig1929.6182.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1929 1862..2236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1929.6182.1

>prot_Ecto-sp13_S_contig1929.6182.1 ID=prot_Ecto-sp13_S_contig1929.6182.1|Name=mRNA_Ecto-sp13_S_contig1929.6182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MRLCSNLSCADLASNVTLEISLDEHRPCRPVASCVLIQSTELFSSLIWKK
VNGGRLLCLAAGHAGEDKTQPTACATRSWSGFFPRYICHLGLTRISCDLR
VLLRQTCRSFSTPGYEVNIGLRHI*
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mRNA from alignment at Ecto-sp13_S_contig1929:1856..2347+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1929.6182.1 ID=mRNA_Ecto-sp13_S_contig1929.6182.1|Name=mRNA_Ecto-sp13_S_contig1929.6182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1929:1856..2347+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTGCATGAGGCTCTGCTCCAATTTGTCTTGTGCCGATTTGGCATCGAA
CGTAACACTTGAGATAAGTTTGGATGAGCACCGACCTTGTCGCCCGGTAG
CTTCCTGTGTCTTGATTCAGAGTACGGAACTCTTTTCCAGCTTGATTTGG
AAGAAGGTGAACGGAGGTAGACTGTTGTGTTTGGCTGCGGGACACGCTGG
TGAAGACAAGACTCAACCCACTGCTTGTGCGACACGATCATGGTCGGGAT
TTTTTCCTAGGTACATTTGTCATCTGGGGCTTACGCGAATCTCGTGTGAT
CTCCGGGTGCTTTTGAGACAAACATGTCGATCGTTTTCTACTCCTGGTTA
TGAAGTCAACATCGGTCTTCGTCACATCTGAAGGCTTCAGAAATTTCGAA
ACACTAGAAACGTAACCCCGACCCCATGACTACAAAGATCCCAGTGCGGA
CTTCTTTAGCCCTGGGTCTAAGGAGATAGCTCCAAACCTAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1929:1856..2347+

>mRNA_Ecto-sp13_S_contig1929.6182.1 ID=mRNA_Ecto-sp13_S_contig1929.6182.1|Name=mRNA_Ecto-sp13_S_contig1929.6182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1929:1856..2347+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCTCTGCTCCAATTTGTCTTGTGCCGATTTGGCATCGAACGTAAC
ACTTGAGATAAGTTTGGATGAGCACCGACCTTGTCGCCCGGTAGCTTCCT
GTGTCTTGATTCAGAGTACGGAACTCTTTTCCAGCTTGATTTGGAAGAAG
GTGAACGGAGGTAGACTGTTGTGTTTGGCTGCGGGACACGCTGGTGAAGA
CAAGACTCAACCCACTGCTTGTGCGACACGATCATGGTCGGGATTTTTTC
CTAGGTACATTTGTCATCTGGGGCTTACGCGAATCTCGTGTGATCTCCGG
GTGCTTTTGAGACAAACATGTCGATCGTTTTCTACTCCTGGTTATGAAGT
CAACATCGGTCTTCGTCACATCTGA
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