mRNA_Ecto-sp13_S_contig1927.6176.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1927.6176.1
Unique NamemRNA_Ecto-sp13_S_contig1927.6176.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: D8LB57_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB57_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 3.150e-79
Identity = 138/150 (92.00%), Postives = 142/150 (94.67%), Query Frame = 1 
Query:    1 GAVVVATLACGGSAFSLPAPSSAATA--GVARARPSSRHVMAAAAAPGPGSSECSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPEXXXXXAKTKAQGMVGAPRTSE 444
            GAVVVATLACGGSAFS+P PSSAA+A  GVA ARPSSRHVMAA AAPGPGSS+ SAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPEXX  XAKTKAQGM+GAPRTSE
Sbjct:    9 GAVVVATLACGGSAFSIP-PSSAASAAAGVAGARPSSRHVMAAEAAPGPGSSDYSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPEXXQTXAKTKAQGMIGAPRTSE 157
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: A0A836CLN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 9.960e-18
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  178 SRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXXXXAKTKAQGMVGAPR 435
            SR+DV   +  A+++++  F  AA AKDDP+  GTK DP+F  C+S CIY CTK K   +RSR EC+PE     A TKAQ M G P+
Sbjct:   41 SRRDVFAGI--ASSVAAVGFAGAAVAKDDPSKVGTKDDPKFQACISQCIYECTKPKGSMTRSRGECLPECKKNCATTKAQAMTGVPK 125
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: A0A7S3QJL1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJL1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.140e-15
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:  172 PTSRKDVLGAVFGAAAMSSFAFVSAADAKD-DPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXXXXAKTKAQGMVGAP 432
            P +R   L + F AA +   A V+++ AKD DPALKGTK DP +  CLS CI+ CTK K ++ +SR ECIPE     A +K Q M+G P
Sbjct:   27 PLNRVSFLKSSFAAAGLVLTADVNSSVAKDIDPALKGTKNDPAYQACLSQCIFECTKPKGDEQKSRSECIPECKTKCATSKQQLMIGTP 115
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: A0A7S2GTD3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GTD3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.610e-14
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:  166 ELPTSRKDVLGAVFGAAAMSSFAFVSAADAKD--DPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXXXXAKTKAQGMVGAPRTSE 444
            E P+SRK  L +   +AA+  F   S A A    DPA+KGTKADP +  C+S C+Y CTK K ++ +SRQECIPE     A  K Q M+G P   E
Sbjct:   39 EQPSSRKAFLQS---SAALLPFVVASPAFAAKEVDPAVKGTKADPAYQNCVSQCLYDCTKPKGDEQKSRQECIPECKKQCATDKQQLMIGTPIKKE 131
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: A0A1Z5JPE7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPE7_FISSO)

HSP 1 Score: 73.2 bits (178), Expect = 5.330e-14
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:  169 LPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXXXXAKTKAQGMVGAPR 435
            L  +R   L  V GAAA ++ A  + A  + DPA+KGTK DP +  CLS C+Y CTK K  + +SRQEC+  XXX  AKTKAQ M+G P+
Sbjct:   21 LSGTRAQFLQHVLGAAATATIALPAYAK-EVDPAIKGTKKDPNYEKCLSVCMYDCTKPKGSEQKSRQECLXXXXXKCAKTKAQLMLGTPK 109
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: A0A7S2XYH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.940e-13
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:  211 AAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXXXXAKTKAQGMVGAPRTSE 444
            AA ++  A VSA   K++  L GTK DP F  CLS CIYFCTK K  ++R R EC+PE     A TK QG+VG P ++E
Sbjct:  107 AALVAGAAPVSAKKVKEE--LIGTKDDPTFKNCLSQCIYFCTKPKGTETRERSECLPECKKQCATTKEQGLVGKPISAE 183
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: K0SIG8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIG8_THAOC)

HSP 1 Score: 73.6 bits (179), Expect = 4.400e-13
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  262 DPALKGTKADPEFVTCLSDCIYFCTKSKE-QSRSRQECIPEXXXXXAKTKAQGMVGAPR 435
            DPALKGTKADPE+ +CLS CIY CTK K  + ++R EC+PE     A TK Q + GAP+
Sbjct:   68 DPALKGTKADPEYQSCLSTCIYECTKPKGVEQKTRAECLPECKSKCATTKQQLLTGAPK 126
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: A0A6U3ZBC6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZBC6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.110e-13
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  262 DPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXXXXAKTKAQGMVGAPRTSE 444
            DP++KGTKADP +  C+S C+Y CTK K ++ +SRQECIPE     A  K Q M+G+P   E
Sbjct:   71 DPSVKGTKADPAYQACVSQCLYDCTKPKGDEQKSRQECIPECKKQCATDKKQLMIGSPIQKE 132
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BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Match: B8CG77_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG77_THAPS)

HSP 1 Score: 55.1 bits (131), Expect = 7.580e-7
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  214 AAMSSFAFVSA---ADAKD-DPALKGTKADPEFVTCLSDCIYFCTKSK 345
            AA +  AF+++   A AKD DPALKGTKADPEF  CLS C+Y CTK K
Sbjct:   48 AASTCLAFLASSPPAFAKDVDPALKGTKADPEFQACLSQCVYECTKPK 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1927.6176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LB57_ECTSI3.150e-7992.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLN5_9STRA9.960e-1849.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3QJL1_9STRA2.140e-1548.31Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2GTD3_9STRA1.610e-1446.88Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5JPE7_FISSO5.330e-1450.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2XYH9_9STRA3.940e-1350.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0SIG8_THAOC4.400e-1357.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6U3ZBC6_9STRA5.110e-1351.61Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8CG77_THAPS7.580e-762.50Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1927contigEcto-sp13_S_contig1927:13118..14483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score240.4
Seed ortholog evalue5.6e-61
Seed eggNOG ortholog2880.D8LB57
Model size447
Hectar predicted targeting categorychloroplast
Exons3
EggNOG OGs2E95B@1,2SFIZ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005130.1
Cds size447
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.742482-CDS-Ecto-sp13_S_contig1927:13117..132461681462980.742482-CDS-Ecto-sp13_S_contig1927:13117..13246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1927 13118..13246 -
1681462980.755268-CDS-Ecto-sp13_S_contig1927:13782..138421681462980.755268-CDS-Ecto-sp13_S_contig1927:13782..13842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1927 13783..13842 -
1681462980.7939992-CDS-Ecto-sp13_S_contig1927:14225..144831681462980.7939992-CDS-Ecto-sp13_S_contig1927:14225..14483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1927 14226..14483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1927.6176.1prot_Ecto-sp13_S_contig1927.6176.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1927 13118..14483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1927.6176.1

>prot_Ecto-sp13_S_contig1927.6176.1 ID=prot_Ecto-sp13_S_contig1927.6176.1|Name=mRNA_Ecto-sp13_S_contig1927.6176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
GAVVVATLACGGSAFSLPAPSSAATAGVARARPSSRHVMAAAAAPGPGSS
ECSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEF
VTCLSDCIYFCTKSKEQSRSRQECIPECRQTCAKTKAQGMVGAPRTSE*
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mRNA from alignment at Ecto-sp13_S_contig1927:13118..14483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1927.6176.1 ID=mRNA_Ecto-sp13_S_contig1927.6176.1|Name=mRNA_Ecto-sp13_S_contig1927.6176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1927:13118..14483- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCGGTGGTGGTAGCGACTCTCGCCTGCGGAGGATCGGCGTTTTCCCT
TCCGGCGCCTTCTTCTGCAGCAACAGCAGGCGTCGCAAGGGCACGACCAT
CATCGCGACACGTGATGGCAGCAGCAGCAGCACCAGGTCCCGGGAGCAGC
GAATGCTCGGCAGCAGAGTTGCCGACGTCGCGAAAGGATGTGCTGGGAGC
GGTGTTCGGGGCCGCGGCAATGTCTTCCTTCGCCTTCGTGTCTGCCGCGG
ACGCCAAGGTCTGTGCGGAACGCCACCACACAGCCGTTGCAGTAGAGCAG
TTGAGACTTAGGTGTGCAGCAAAATTCAGCAGGTCCCGAAGCAAGAGCGC
TACGGCACAGGGGTTTCTGCTGGCCTCTTGTTGTACACCTCTTGTCGTAC
ACCCTAAGATCTTCAAACCTCTGCCGGTATGCACTCAGCTGAACTGACTC
GTATTGCCGGGTACGCATGAACACCATGATGGATGCACATCCACCCGCGG
ACGGTGAAGCGTTGCCGTGGCTTACAGCGACGATGCAACGCGCGCCATTT
TTGTGCTTTTTCGGCCGCCTGTCTTCTCGACCAACCACATGGCGTGGAAC
GCACACATTCCTTCGCGTCCTGCTCACGTCCTTACCCGCAGGACGACCCG
GCGCTCAAGGGCACTAAGGCAGACCCCGAGTTCGTAACCTGCCTCAGCGA
TGTGAGTTGTGGTGTTGACGTTGCCTGCAGGCAAGACGACCACGTCCTCT
CTTTTGTCCGTCGGTTCACTGGGTGGGCGTTTTATTTCATCGGAACGTCT
GTGTGTGCACCGAACGGTCGGTTCGAGAGGTGAACCCGCACCCAGCAGCA
GCAGCGGGACCCTTCTCGTTCGCGTGCGATCTTGCTCTCCCTACCCTTTC
CCGCCCTCTCGATGAGGAGACTATTTCTTGCTTTGGTCGGCAGTTATGGA
GTTCCTGTGAAGCGCGCAGTCATCGCAGGGCGTACCAGACCTTGACCCCC
CCCCCCCCCGACCTCGGATCGTGTTGCAATTTGTTGGCGCTACACTTCTT
GTCGAGAGCGTGCACCTTTGAATGCCTGTTTTAGTTCAACCCGTCCTTAA
ATATCACCACGTGCATGCTTGCTGTGTCTTCTTGCACCACCTCCTGTGGT
ATAGTCGAACACGAGCCCCGCCCGCCGTTGATTTTGCACGCACGCACGCT
TCCCCCCCCCTCTCCGACACCCACGAATGAAACGCAGTGCATCTATTTCT
GCACCAAGTCGAAGGAGCAGTCGCGCTCAAGGCAAGAGTGCATCCCCGAG
TGCCGCCAGACCTGTGCAAAGACTAAGGCGCAGGGCATGGTCGGTGCTCC
CCGCACATCGGAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1927:13118..14483-

>mRNA_Ecto-sp13_S_contig1927.6176.1 ID=mRNA_Ecto-sp13_S_contig1927.6176.1|Name=mRNA_Ecto-sp13_S_contig1927.6176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1927:13118..14483- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCGGTGGTGGTAGCGACTCTCGCCTGCGGAGGATCGGCGTTTTCCCT
TCCGGCGCCTTCTTCTGCAGCAACAGCAGGCGTCGCAAGGGCACGACCAT
CATCGCGACACGTGATGGCAGCAGCAGCAGCACCAGGTCCCGGGAGCAGC
GAATGCTCGGCAGCAGAGTTGCCGACGTCGCGAAAGGATGTGCTGGGAGC
GGTGTTCGGGGCCGCGGCAATGTCTTCCTTCGCCTTCGTGTCTGCCGCGG
ACGCCAAGGACGACCCGGCGCTCAAGGGCACTAAGGCAGACCCCGAGTTC
GTAACCTGCCTCAGCGATTGCATCTATTTCTGCACCAAGTCGAAGGAGCA
GTCGCGCTCAAGGCAAGAGTGCATCCCCGAGTGCCGCCAGACCTGTGCAA
AGACTAAGGCGCAGGGCATGGTCGGTGCTCCCCGCACATCGGAATAG
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