mRNA_Ecto-sp13_S_contig19265.6171.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19265.6171.1
Unique NamemRNA_Ecto-sp13_S_contig19265.6171.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19265.6171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19265contigEcto-sp13_S_contig19265:84..2843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size476
Hectar predicted targeting categoryother localisation
Exons5
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.4074564-CDS-Ecto-sp13_S_contig19265:84..2401681462980.4074564-CDS-Ecto-sp13_S_contig19265:84..240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19265 85..240 -
1681462980.4203374-CDS-Ecto-sp13_S_contig19265:532..6161681462980.4203374-CDS-Ecto-sp13_S_contig19265:532..616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19265 533..616 -
1681462980.4327009-CDS-Ecto-sp13_S_contig19265:1346..14061681462980.4327009-CDS-Ecto-sp13_S_contig19265:1346..1406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19265 1347..1406 -
1681462980.4406624-CDS-Ecto-sp13_S_contig19265:2194..23121681462980.4406624-CDS-Ecto-sp13_S_contig19265:2194..2312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19265 2195..2312 -
1681462980.4540746-CDS-Ecto-sp13_S_contig19265:2787..28431681462980.4540746-CDS-Ecto-sp13_S_contig19265:2787..2843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19265 2788..2843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19265.6171.1prot_Ecto-sp13_S_contig19265.6171.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19265 85..2843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19265.6171.1

>prot_Ecto-sp13_S_contig19265.6171.1 ID=prot_Ecto-sp13_S_contig19265.6171.1|Name=mRNA_Ecto-sp13_S_contig19265.6171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
FHSHWWNRETGQDCGAFWGNDFGAAALSAAEAITAPGFSSSGKRRGKKSG
GRRDGIGEAAAAPSTPTEQKEEEGHEEPAACEPQPAQPTLPALPAQPAQG
VEFPAPVVPVWKLLEAANGSASTTVTEEMAAGQMLAYQQMVDSSVPVGRL
VVGRSAVQ
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mRNA from alignment at Ecto-sp13_S_contig19265:84..2843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19265.6171.1 ID=mRNA_Ecto-sp13_S_contig19265.6171.1|Name=mRNA_Ecto-sp13_S_contig19265.6171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19265:84..2843- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCATTCACATTGGTGGAATAGGGAAACCGGACAAGACTGCGGAGCTTT
CTGGGGGTGAGTCGTGCATAGTTCATGGCATGTGGATTTCGAAACGTCCG
TGGAAACCCTCTACATGGTGCTCAGCGGTCTATCTCTTGTTCAACCATTC
GCGCTCATGGGTGGGTGTATTTACGCTGGACAAGGACCCCGCCTGTGCAG
TGCTGCATACCGTGGTTTTCAACGCTCGAAAAATTCAGCGTTGTCTTTCC
TCAATAGTGCACCCACGAACTCTGATTGTTGGTGATGTTTGTCTTCACAT
CAGAAACCGTATATACTTCTGTACAAAACCTCCACGTGCGACCCTCTAGA
ACGATAGCGACAAGCTAGGTGTGGTTCAGGACTTGAGGATTTTGGTTGTC
CGAAAGCACAGCAGTACCACAGTGCACCTTGTCAGAGAAGCTCCTTCTTC
CTTGGGATGAGCAGCACGCGGACTGTTGACACTTCCTGTACCACATGCTT
GCGGTTTCCGTGACGTTTCCCACAACTGCAGAAACGATTTTGGCGCCGCA
GCGTTGAGCGCCGCCGAGGCTATCACGGCGCCCGGTTTCTCCTCTAGTGG
GAAGAGGCGGGGGAAGAAGTCCGGCGGACGCAGGGATGGCATAGGGGAGG
TAAGATACATACCTGCCAGAGCTGTGGGCATGGTGATTTGCCGTTTGGCG
TGTGGCATGCGTTCAACGTGGCTTGCACTGTAGATCTCGAACTGTTCCGC
CGTCCCCCCCAGCTACAAATTCCCTTGACAGGTGTCGATTGCTTACGTGG
TTTGGTACTGCACTGAGAGCTATGTGTCTTGTTTGACAACGAATGCATCG
AGAGTCTCCCTGGTGGCAGCGGCTGTGGGGTCGTAATATTTTCGAGTTTA
CACCTGTGTTGTTGGGTCGTATTCTTGTCTGTAGATTTATTTATTTTGTG
CTTACATCACAAAACACGATCTGGATTTTATCGAGAAGTTGGCGTGAAAC
TTTAGCTTCGTATCATAGCAGGCTGCCTCTGGCCGTTGTCAAGGTGTTGC
CTCGATTTTCCATCGATGGACTCTAAACACGACGATGAACGAACTTGGTC
GCACACCTACCCACCATTTATTTTTCTGTTCCGAGAAACAAGTGTACTTA
CCTCAGAAGGAGGACGTCGGTTTAGTGTGAGTCAGGCATGGAAAATTGAA
AATTGCACAGTGTATTAGTTGGGTCGATTGTCTTTTTAACGAGGACTTGA
TGAAGGCTTTGGGTGATCGCAGCGTCAGTCATTTTTGCTTGTCAAGCTGC
AGAAAGTGGGCGAGAAACTGCAGTAGAACGAGGATGTCCGAGGTGTTCTC
TCTCTTGCACTGCTCTATGGGTTTCGGCGCTGTTTCGATCTGACCTCTCT
CTCTCACACTACCTTTCTCTCTCTTTGCTTGCACCAGGCGGCTGCGGCCC
CCAGCACCCCCACGGAACAGAAGGAGGAGGAAGGGCACGAGGAACCGGTG
AGCGGGGGGATCGTGAGGGTCGAGAGGAGGAAAGTAACGTTTGGAGCTTA
AAGACACCAAGATCATTTATTAATTGCACCTCAAAGCACCTTCCAACACG
CCCTCATTATGTACCCACATCAACGCCTCGACGGCCTCCATGGCGTCTCC
GACCGATGGCCCCTCCTCGAGCGCACCCGCCGCCGCCGCCCTCGCTTTCC
GCCGTCGAGGCGTTGATATAGGTACATAGCGAGGGTGAGGTGCTTGAAGA
TGTTTTGAGGCAGTGCGTACAATCAACAAAGGATGAAGGTACCTCTTGAA
GTAGGTTCCAAACATGAGCGCGTAGTGTACTTGTATTGGGTGTGGATGGC
CCATTATGGGTCGGGGGGCGTTTTCAGGGAAGTTGCATTGAGAGAGGGCG
TGTTCTCGATTTTCCCTCCTCCCGTGCGTTACAATACTCGCGGCGAAGAG
TTTGTGGATGAGAATGTTGTGTGCGGGGAGTACTGATACCCTTGACCCCC
ATCACTCCCTCTTGCCCGATGAGGTGGAACCTGGCACGCCCTTGGGCTTT
TTACTTGTAGCAACTTTTCCTTTCAAACGCTGCTGTCTCGGAAGCAGCAG
GTGCCTCAGCGGAAGCAGCCTTGTGATGACGGCGTACCACATTCCCATCG
TCGTGCGGCCAAAGTGACGATTCCCTACCGGACACCCCCCCCCCCCCGTC
GTGTGTGCCGTGCGCCCGCCGAACCAGGCTGCTTGTGAACCTCAGCCCGC
ACAGCCCACGCTGCCCGCCCTGCCCGCACAGCCTGCCCAGGGTGTGGAGT
TCCCTGCACCGGTAGGGTTTCTGTTGTCAGCAGATGGCATCTTCTACATA
GCCGAAGCGGTTGGTCTGGAATAAACACAAGGAGATGCTTGGAGTCTGTG
TCGTATGTACCTGGTACGTGTTTATTGCACGTGACGCAGTGTTATGAGAA
ATGAGTTGAAGGGCGGGCGGGGAGCCAAAGCCCAAACTGCTTTGAACCCT
TGCGTCGTAGACTTGAACCAGCACATATGCATAAGGTCGAAATGTTTCTT
TTCCACGTTCCTGAAGTCTCGAAGCTCCGTGCCTTGTCCTCCCTCACGAC
CAGGTGGTGCCGGTGTGGAAGCTGCTAGAGGCGGCGAACGGATCTGCTTC
TACGACGGTTACTGAGGAGATGGCCGCTGGGCAGATGCTCGCCTATCAAC
AGATGGTGGACAGCAGCGTGCCGGTTGGCCGCCTTGTCGTGGGGAGGTCC
GCTGTGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19265:84..2843-

>mRNA_Ecto-sp13_S_contig19265.6171.1 ID=mRNA_Ecto-sp13_S_contig19265.6171.1|Name=mRNA_Ecto-sp13_S_contig19265.6171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19265:84..2843- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCATTCACATTGGTGGAATAGGGAAACCGGACAAGACTGCGGAGCTTT
CTGGGGAAACGATTTTGGCGCCGCAGCGTTGAGCGCCGCCGAGGCTATCA
CGGCGCCCGGTTTCTCCTCTAGTGGGAAGAGGCGGGGGAAGAAGTCCGGC
GGACGCAGGGATGGCATAGGGGAGGCGGCTGCGGCCCCCAGCACCCCCAC
GGAACAGAAGGAGGAGGAAGGGCACGAGGAACCGGCTGCTTGTGAACCTC
AGCCCGCACAGCCCACGCTGCCCGCCCTGCCCGCACAGCCTGCCCAGGGT
GTGGAGTTCCCTGCACCGGTGGTGCCGGTGTGGAAGCTGCTAGAGGCGGC
GAACGGATCTGCTTCTACGACGGTTACTGAGGAGATGGCCGCTGGGCAGA
TGCTCGCCTATCAACAGATGGTGGACAGCAGCGTGCCGGTTGGCCGCCTT
GTCGTGGGGAGGTCCGCTGTGCAG
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