mRNA_Ecto-sp13_S_contig19262.6169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19262.6169.1
Unique NamemRNA_Ecto-sp13_S_contig19262.6169.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: D7FJR1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR1_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 2.290e-69
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1
Query:    1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALFK 318
            DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVR+YDDKMEVSSQAMLTKLTDAIKQHLALFK
Sbjct:   69 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRVYDDKMEVSSQAMLTKLTDAIKQHLALFK 174          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: A0A835ZHH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHH2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.030e-28
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 DTRVSFHMDEKD-VRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYK-DTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLA 309
            DTR++ H  E+     LA+ VN IL +FKRLKAN A+G  PYKE SVE+     +G  I +ECNPN++PDPFKA VFV++ D+ +EV+SQA LTKL D IK +LA
Sbjct:   60 DTRITVHGFERSHCLALANEVNAILSAFKRLKANRADGKAPYKEQSVEFIIHAGNGATIEIECNPNLYPDPFKAMVFVKVLDESIEVASQAQLTKLADVIKTYLA 164          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: A0A2T1M3G8_9CHRO (Uncharacterized protein n=1 Tax=Aphanothece hegewaldii CCALA 016 TaxID=2107694 RepID=A0A2T1M3G8_9CHRO)

HSP 1 Score: 76.3 bits (186), Expect = 9.510e-16
Identity = 37/102 (36.27%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   10 VSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALF 315
            VSF    +  + L   +N ++ S K + +NA+ GGKP  +  +EY+ T D + + V CNPNI+P PF A+V + + DD++ ++++A L +LT+ ++Q L  F
Sbjct:   13 VSFSFTVEAAQNLKQEINQLMLSLKAIASNASSGGKPKPQKMMEYRYTGD-VFLEVFCNPNIYPSPFAAKVLLTVRDDRIRLTTEAELMRLTEDLEQFLNQF 113          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: M2XQ70_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XQ70_GALSU)

HSP 1 Score: 75.1 bits (183), Expect = 1.010e-14
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQ 300
            DT+++F     D+ +L + +N ++ SF+   A A    K   + + EY    +GL I +ECNPN+F   F+A+V++R+YDDK+ V SQA LT L D +++
Sbjct:   68 DTQLTFMFSYADMLQLVEKLNQLVLSFRNA-AEATAQRKKTVQPTFEYYCQRNGLFIHMECNPNLFTSAFQAKVYIRVYDDKIRVHSQASLTTLMDVLRK 166          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: A0A7S2RP53_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP53_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.480e-14
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    7 RVSFHMDEKDVRKLADVVNNILRSFKRLK-ANAAEGGKPYKE--DSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLA 309
            +VSF   E D  +L+  +N++L +F   K    +  G+  +    S+EY  + DG  +++ECNPNI+PDPFKA VFV++  D +EV++Q  L +L DA+K + A
Sbjct:   70 KVSFSAKEAD--ELSQQLNDLLATFSSSKDGEESSSGRRQRVRLPSMEYTSSHDGRWMLLECNPNIYPDPFKALVFVKVRTDALEVTTQCFLPQLVDAVKAYRA 171          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: UPI001746F5EA (hypothetical protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI001746F5EA)

HSP 1 Score: 68.6 bits (166), Expect = 1.010e-12
Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   10 VSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALF 315
            VSF       R+L   + +++ S K   +N A GGKP  +  +EY+ T + + + V CNPNI+  PF A+V + + DD++ ++++A LT++T+ + Q+L  F
Sbjct:   15 VSFSFTPNAARELQAAIASLMNSLKATASNTA-GGKPQPQQPMEYQHTGE-VFLEVFCNPNIWSSPFAAKVLITLRDDRIRLTTEAELTRITEDLNQYLDQF 114          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: A0A0G4GV24_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GV24_VITBC)

HSP 1 Score: 68.6 bits (166), Expect = 4.340e-12
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGG-KPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQH 303
            DT V      +  ++L+  V+ +L++F R+ A+  EG  +P +E S+E++  +DG  I  ECNPNIFPD  KAQVF ++    +++++Q     L +A+ Q+
Sbjct:   77 DTSVGVAFTPEACKELSAKVDEVLQTF-RVIADRREGRERPRREPSMEFQTEVDGTRISFECNPNIFPDYTKAQVFFQVKSPHVDITAQLSFQSLIEALAQY 177          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: M2Y8H4_GALSU (Peptidyl-prolyl cis-trans isomerase-like-protein isoform 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8H4_GALSU)

HSP 1 Score: 67.4 bits (163), Expect = 5.580e-11
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTD 288
            DT+++F     D+ +L + +N ++ SF+   A A    K   + + EY    +GL I +ECNPN+F   F+A+V++R+YDDK+ V SQA    + D
Sbjct:   68 DTQLTFMFSYADMLQLVEKLNQLVLSFRNA-AEATAQRKKTVQPTFEYYCQRNGLFIHMECNPNLFTSAFQAKVYIRVYDDKIRVHSQAKNKLMND 162          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: UPI001682B17B (hypothetical protein n=1 Tax=unclassified Planktothrix TaxID=2648599 RepID=UPI001682B17B)

HSP 1 Score: 62.0 bits (149), Expect = 3.870e-10
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGG--KPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALF 315
            D  VSF    +  R+L   +  ++   K + A A  GG  K   +  +EY+   + + + + CNPNI+P PF A+V + + DD++ +S++A LT++T+ I  +L  F
Sbjct:   12 DGSVSFSFTPEAARELQGAIAQLMERLKAVSAQATGGGGGKASPQKPMEYRYAGE-VFLEMFCNPNIWPSPFAAKVLITLRDDRIRLSTEAELTRITEDINVYLEQF 117          
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: UPI00168313A8 (hypothetical protein n=1 Tax=Leptolyngbya sp. FACHB-711 TaxID=2692813 RepID=UPI00168313A8)

HSP 1 Score: 60.1 bits (144), Expect = 2.030e-9
Identity = 32/99 (32.32%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   10 VSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHL 306
            V F       R+L   +  +++S K   A AA G KP  +  +EY+ T + + + V CNPNI+  PF A++ + + DD++ ++++A LT++++ I Q+L
Sbjct:   15 VIFAFSPTAARELQSAIAVLMQSLKATAAKAA-GSKPEPQPPLEYRHTGE-VFLEVFCNPNIWSSPFAAKLLITLRDDRIRLTTEAELTRISEDIAQYL 111          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FJR1_ECTSI2.290e-6999.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHH2_9STRA1.030e-2855.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2T1M3G8_9CHRO9.510e-1636.27Uncharacterized protein n=1 Tax=Aphanothece hegewa... [more]
M2XQ70_GALSU1.010e-1438.00Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A7S2RP53_9STRA1.480e-1439.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001746F5EA1.010e-1234.31hypothetical protein n=1 Tax=Phormidium tenue TaxI... [more]
A0A0G4GV24_VITBC4.340e-1235.29Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
M2Y8H4_GALSU5.580e-1136.46Peptidyl-prolyl cis-trans isomerase-like-protein i... [more]
UPI001682B17B3.870e-1031.78hypothetical protein n=1 Tax=unclassified Planktot... [more]
UPI00168313A82.030e-932.32hypothetical protein n=1 Tax=Leptolyngbya sp. FACH... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19262contigEcto-sp13_S_contig19262:1215..3333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score69.3
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog449447.MAE_45690
Model size321
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs1G6KP@1117,2AERS@1,314NH@2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010530.1
Cds size300
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.28553-CDS-Ecto-sp13_S_contig19262:1214..13611681462980.28553-CDS-Ecto-sp13_S_contig19262:1214..1361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19262 1215..1361 -
1681462980.2958794-CDS-Ecto-sp13_S_contig19262:2273..23901681462980.2958794-CDS-Ecto-sp13_S_contig19262:2273..2390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19262 2274..2390 -
1681462980.3049865-CDS-Ecto-sp13_S_contig19262:3276..33121681462980.3049865-CDS-Ecto-sp13_S_contig19262:3276..3312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19262 3277..3312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.3142743-UTR-Ecto-sp13_S_contig19262:3312..33331681462980.3142743-UTR-Ecto-sp13_S_contig19262:3312..3333Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19262 3313..3333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19262.6169.1prot_Ecto-sp13_S_contig19262.6169.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19262 1215..3312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19262.6169.1

>prot_Ecto-sp13_S_contig19262.6169.1 ID=prot_Ecto-sp13_S_contig19262.6169.1|Name=mRNA_Ecto-sp13_S_contig19262.6169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNI
VVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALFK*
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mRNA from alignment at Ecto-sp13_S_contig19262:1215..3333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19262.6169.1 ID=mRNA_Ecto-sp13_S_contig19262.6169.1|Name=mRNA_Ecto-sp13_S_contig19262.6169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19262:1215..3333- (Ectocarpus species13 EcNAP12_S_4_19m)
GACACTCGTGTATCGTTCCACATGGACGAGAAAGACGTCCGGAAACTGGC TGATGTGGTACGTGTGGTGGTGCAGATCGAAAGGTAGCAGCATGTGCACC ATTCGCTTCTATGGGTCAGCATGCATTCTTTCCGGCTCTACAGATACTGG TACACCTCAATTTTATGTAGGATTGTGTAGACTGGTCCTGTGCGCCACCA ACCTGATACAACGTTGAGTGCTTGTCGTGTACCAGTGCTAGACATCGCAT ATTGAGAACACCCTTTCTCTGTTACCGAGCACGTGTCCCTGGAGTTTGAG CTTCCTTAGGGTTTGCTCGGTACCAGAGAAAGAGTATTTCTCAACATTCG TTGCGTGCATCTGCAGCTCTCTGCGGGGAATAACTTCTGAGGCGTGTTTG TGTTTGTCGTTTGAGCAAACCGATCGCCATACTGCTGTTCTTCCCGACAA ACGAGAGACGTTAGGCTTCATCAGGCGACGGTATTTCCCTGTTTTTCTAG GAACATCTTCCCGCGTATCAGGGAAAGTTTCGGCAGTACTGTACGCCGAA GCGCCTGCTCGCTTTCCCCGCAGGTTGGGCTGAGGAGGGGTATGCATGGG AGTTCCATGCAAAGCACGACGGTCGTATCAGATCATGTGCGGGTTAATGT GGCATGAGGTTGAATTCACCTACCCGTTGTATTTGCCATGGCTTGCAGCA AACACCCCCCATGTTTAAGCAAGTCCAACTCCAGCTGTTCGCGGCGAAGC TGCCGGCAGATTGTTTCATGTTTCCTCTCGCGACTCTCATGTTGTTGAGA AGTAATCGGACGGAGGAGCGCGAGCCATATGGACGGTCTCCAACTCTCGA TTCTCTCGGGAGTTCGTTCCCCGATGTCCCAGATACTAACCCGTGTACAT CGAAACGCCTCCACCGTGCACCCGCCCGTCACATGTACAAAAGGTGAACA ACATTTTGAGGTCCTTCAAACGCCTGAAAGCGAACGCTGCGGAAGGGGGA AAGCCGTACAAGGAAGACAGCGTGGAGTACAAAGACACTATCGACGGCCT TAACATCGTGGTAAGGTTCCAACGCGGCAGCGCTGTAAAGTGCCTCTGTT CTGGTATATGTTGTGAGCCTCAGGACGCACGCATACGATGTAGGACCTGA ACTTTGTGGTGAGAATGAAGTACCGCCAAAAATTCGGTCGCCTCATTGGG AGTACCCGGAGCTGCACTTGGTTTGGCAGTGCCTGTGCATCTCCAGTCTT AGTCAATATTCCGTACCATTGCTCATGTAGTGACTTATGTGCTTCCCTAT GTGGGGCGTATCGTACACGTAGTTTGTCCTGACGTTTGGTGAGTGGCCTT ACTTCCTGTTATCTCTCCGGATGGTCTGTATGTCTTACCTGTCCTTGTCG TCCCCTGGATACCGTTGTCTCTCCGGTGGAGTATGCCTTTGTGTTGGCCA CATACTGTATACGCCGTGTTTACAACATCGTACCATCTTCTGCTGCACTG AGGTACCTCTGGTGCTATGTATATGCTCTATGCACACGAGCTACCACATG AACTAACGTCTTTGGGTGTCGACGTCTGCTGCCACGTGCTGGGATACACC CCAAAATTCCCGTAATAGATAATGAGCCTTTAGGTTCAGCGTGTTATTTC TTGTTCAAAAGTTGCTGAGAGTATTCATATGGGCGAGTCGGCCCTTTCGA TTCCTCTCCGCATATATCCCGTGCCTGGCACGACTAAGATTGGAAACGTG CGTGCAATACGCCGTTGGCTGTGTTTCCTATATTTCCCTCCCAAAGCCCT TTCGTTGCTGAGAACCGCTTTCATTTGTAAATGGCGAACTTGCTGTCTCT GCGCAACCCACTTCTTTCCCCTTTTTTCGTGTGGTCCCTAGTGGTAAACG CCTGATTCGTCAAGAACAAATGCCTCCGTGATTTCCCGTTCCGTGGCCAA AATGCCTGCTTTACGCTATCAGGTGGAGTGCAACCCGAACATCTTTCCGG ACCCGTTCAAGGCACAGGTTTTCGTGCGTATTTACGATGACAAGATGGAG GTCAGCAGCCAGGCGATGCTCACCAAGCTAACGGATGCTATCAAGCAGCA CTTGGCCCTGTTCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19262:1215..3333-

>mRNA_Ecto-sp13_S_contig19262.6169.1 ID=mRNA_Ecto-sp13_S_contig19262.6169.1|Name=mRNA_Ecto-sp13_S_contig19262.6169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19262:1215..3333- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGAAAGACGTCCGGAAACTGGCTGATGTGGTGAACAACATTTT
GAGGTCCTTCAAACGCCTGAAAGCGAACGCTGCGGAAGGGGGAAAGCCGT
ACAAGGAAGACAGCGTGGAGTACAAAGACACTATCGACGGCCTTAACATC
GTGGTGGAGTGCAACCCGAACATCTTTCCGGACCCGTTCAAGGCACAGGT
TTTCGTGCGTATTTACGATGACAAGATGGAGGTCAGCAGCCAGGCGATGC
TCACCAAGCTAACGGATGCTATCAAGCAGCACTTGGCCCTGTTCAAGTGA
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