mRNA_Ecto-sp13_S_contig19262.6169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: D7FJR1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR1_ECTSI) HSP 1 Score: 214 bits (544), Expect = 2.290e-69 Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1
Query: 1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALFK 318
DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVR+YDDKMEVSSQAMLTKLTDAIKQHLALFK
Sbjct: 69 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRVYDDKMEVSSQAMLTKLTDAIKQHLALFK 174
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: A0A835ZHH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHH2_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.030e-28 Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 1 DTRVSFHMDEKD-VRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYK-DTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLA 309
DTR++ H E+ LA+ VN IL +FKRLKAN A+G PYKE SVE+ +G I +ECNPN++PDPFKA VFV++ D+ +EV+SQA LTKL D IK +LA
Sbjct: 60 DTRITVHGFERSHCLALANEVNAILSAFKRLKANRADGKAPYKEQSVEFIIHAGNGATIEIECNPNLYPDPFKAMVFVKVLDESIEVASQAQLTKLADVIKTYLA 164
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: A0A2T1M3G8_9CHRO (Uncharacterized protein n=1 Tax=Aphanothece hegewaldii CCALA 016 TaxID=2107694 RepID=A0A2T1M3G8_9CHRO) HSP 1 Score: 76.3 bits (186), Expect = 9.510e-16 Identity = 37/102 (36.27%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 10 VSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALF 315
VSF + + L +N ++ S K + +NA+ GGKP + +EY+ T D + + V CNPNI+P PF A+V + + DD++ ++++A L +LT+ ++Q L F
Sbjct: 13 VSFSFTVEAAQNLKQEINQLMLSLKAIASNASSGGKPKPQKMMEYRYTGD-VFLEVFCNPNIYPSPFAAKVLLTVRDDRIRLTTEAELMRLTEDLEQFLNQF 113
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: M2XQ70_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XQ70_GALSU) HSP 1 Score: 75.1 bits (183), Expect = 1.010e-14 Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQ 300
DT+++F D+ +L + +N ++ SF+ A A K + + EY +GL I +ECNPN+F F+A+V++R+YDDK+ V SQA LT L D +++
Sbjct: 68 DTQLTFMFSYADMLQLVEKLNQLVLSFRNA-AEATAQRKKTVQPTFEYYCQRNGLFIHMECNPNLFTSAFQAKVYIRVYDDKIRVHSQASLTTLMDVLRK 166
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: A0A7S2RP53_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP53_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.480e-14 Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 1
Query: 7 RVSFHMDEKDVRKLADVVNNILRSFKRLK-ANAAEGGKPYKE--DSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLA 309
+VSF E D +L+ +N++L +F K + G+ + S+EY + DG +++ECNPNI+PDPFKA VFV++ D +EV++Q L +L DA+K + A
Sbjct: 70 KVSFSAKEAD--ELSQQLNDLLATFSSSKDGEESSSGRRQRVRLPSMEYTSSHDGRWMLLECNPNIYPDPFKALVFVKVRTDALEVTTQCFLPQLVDAVKAYRA 171
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: UPI001746F5EA (hypothetical protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI001746F5EA) HSP 1 Score: 68.6 bits (166), Expect = 1.010e-12 Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 10 VSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALF 315
VSF R+L + +++ S K +N A GGKP + +EY+ T + + + V CNPNI+ PF A+V + + DD++ ++++A LT++T+ + Q+L F
Sbjct: 15 VSFSFTPNAARELQAAIASLMNSLKATASNTA-GGKPQPQQPMEYQHTGE-VFLEVFCNPNIWSSPFAAKVLITLRDDRIRLTTEAELTRITEDLNQYLDQF 114
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: A0A0G4GV24_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GV24_VITBC) HSP 1 Score: 68.6 bits (166), Expect = 4.340e-12 Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGG-KPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQH 303
DT V + ++L+ V+ +L++F R+ A+ EG +P +E S+E++ +DG I ECNPNIFPD KAQVF ++ +++++Q L +A+ Q+
Sbjct: 77 DTSVGVAFTPEACKELSAKVDEVLQTF-RVIADRREGRERPRREPSMEFQTEVDGTRISFECNPNIFPDYTKAQVFFQVKSPHVDITAQLSFQSLIEALAQY 177
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: M2Y8H4_GALSU (Peptidyl-prolyl cis-trans isomerase-like-protein isoform 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8H4_GALSU) HSP 1 Score: 67.4 bits (163), Expect = 5.580e-11 Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTD 288
DT+++F D+ +L + +N ++ SF+ A A K + + EY +GL I +ECNPN+F F+A+V++R+YDDK+ V SQA + D
Sbjct: 68 DTQLTFMFSYADMLQLVEKLNQLVLSFRNA-AEATAQRKKTVQPTFEYYCQRNGLFIHMECNPNLFTSAFQAKVYIRVYDDKIRVHSQAKNKLMND 162
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: UPI001682B17B (hypothetical protein n=1 Tax=unclassified Planktothrix TaxID=2648599 RepID=UPI001682B17B) HSP 1 Score: 62.0 bits (149), Expect = 3.870e-10 Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 1 DTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGG--KPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHLALF 315
D VSF + R+L + ++ K + A A GG K + +EY+ + + + + CNPNI+P PF A+V + + DD++ +S++A LT++T+ I +L F
Sbjct: 12 DGSVSFSFTPEAARELQGAIAQLMERLKAVSAQATGGGGGKASPQKPMEYRYAGE-VFLEMFCNPNIWPSPFAAKVLITLRDDRIRLSTEAELTRITEDINVYLEQF 117
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Match: UPI00168313A8 (hypothetical protein n=1 Tax=Leptolyngbya sp. FACHB-711 TaxID=2692813 RepID=UPI00168313A8) HSP 1 Score: 60.1 bits (144), Expect = 2.030e-9 Identity = 32/99 (32.32%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 10 VSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRIYDDKMEVSSQAMLTKLTDAIKQHL 306
V F R+L + +++S K A AA G KP + +EY+ T + + + V CNPNI+ PF A++ + + DD++ ++++A LT++++ I Q+L
Sbjct: 15 VIFAFSPTAARELQSAIAVLMQSLKATAAKAA-GSKPEPQPPLEYRHTGE-VFLEVFCNPNIWSSPFAAKLLITLRDDRIRLTTEAELTRISEDIAQYL 111 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19262.6169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19262.6169.1 >prot_Ecto-sp13_S_contig19262.6169.1 ID=prot_Ecto-sp13_S_contig19262.6169.1|Name=mRNA_Ecto-sp13_S_contig19262.6169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp MDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIback to top mRNA from alignment at Ecto-sp13_S_contig19262:1215..3333- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19262.6169.1 ID=mRNA_Ecto-sp13_S_contig19262.6169.1|Name=mRNA_Ecto-sp13_S_contig19262.6169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19262:1215..3333- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19262:1215..3333- >mRNA_Ecto-sp13_S_contig19262.6169.1 ID=mRNA_Ecto-sp13_S_contig19262.6169.1|Name=mRNA_Ecto-sp13_S_contig19262.6169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19262:1215..3333- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |