mRNA_Ecto-sp13_S_contig19258.6167.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19258.6167.1
Unique NamemRNA_Ecto-sp13_S_contig19258.6167.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19258.6167.1 vs. uniprot
Match: D7G1X9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X9_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.890e-5
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:    3 AAVRFLGLRSGDAVESVRWGSGAASQVSCF 92
            AAVRFLGLRSGDA+ESVRWGSGA SQ   F
Sbjct:   13 AAVRFLGLRSGDAIESVRWGSGAVSQHHLF 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19258.6167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1X9_ECTSI4.890e-583.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19258contigEcto-sp13_S_contig19258:1104..1745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size642
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.0966296-UTR-Ecto-sp13_S_contig19258:1103..11581681462980.0966296-UTR-Ecto-sp13_S_contig19258:1103..1158Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19258 1104..1158 +
1681462980.11796-UTR-Ecto-sp13_S_contig19258:1554..17451681462980.11796-UTR-Ecto-sp13_S_contig19258:1554..1745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19258 1555..1745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.1079693-CDS-Ecto-sp13_S_contig19258:1158..15541681462980.1079693-CDS-Ecto-sp13_S_contig19258:1158..1554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19258 1159..1554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19258.6167.1prot_Ecto-sp13_S_contig19258.6167.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19258 1159..1554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19258.6167.1

>prot_Ecto-sp13_S_contig19258.6167.1 ID=prot_Ecto-sp13_S_contig19258.6167.1|Name=mRNA_Ecto-sp13_S_contig19258.6167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MGLWCRFPSELFPLILIYSTTATAVRLELTTSSRSWRKHVVCRRCRCAGG
GAHARIYSIRCALSDVRLCVFRGEKIEVTSRDVGCAIAVFAPLLCLVTCI
QQQVRLTADSKQSVRCCREGRRRGYIYSPSV*
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mRNA from alignment at Ecto-sp13_S_contig19258:1104..1745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19258.6167.1 ID=mRNA_Ecto-sp13_S_contig19258.6167.1|Name=mRNA_Ecto-sp13_S_contig19258.6167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19258:1104..1745+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCGCTGTAAGGTTTCTTGGATTGCGCAGCGGAGACGCTGTCGAGAGT
GTGCGATGGGGCTCTGGTGCCGCTTCCCAAGTGAGTTGTTTCCCTTGATA
CTTATATACTCAACTACGGCAACAGCTGTTAGACTAGAGCTTACAACAAG
CAGCAGGTCTTGGCGCAAGCATGTTGTGTGTCGTCGATGCCGTTGTGCCG
GCGGGGGTGCACATGCACGAATTTATTCAATTCGGTGTGCACTATCGGAT
GTGCGGCTTTGTGTGTTCAGGGGCGAAAAAATTGAGGTAACGAGTCGGGA
TGTCGGGTGCGCCATTGCGGTCTTTGCCCCTCTGCTGTGTCTCGTGACAT
GCATTCAGCAGCAGGTGCGGCTCACGGCGGACAGCAAGCAGTCAGTGCGT
TGCTGCCGGGAAGGGCGGCGACGCGGGTACATTTATTCACCTAGCGTTTG
ATTCATAACAGATGTCGAATAATAATCAACGTGACGATGTAACCCTTTGC
TCCGTACAGGAGTAGCATTTGTAATCTTCTTTATAGTGCACATACCCTCG
TTTGTTGTTCAGGATATTTCAAGAGCGCAGCAGCGGTGTCGAGGTACTGC
TGTTGTACACCCAACTTGTTTTCTTCTCTATCTAACTGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19258:1104..1745+

>mRNA_Ecto-sp13_S_contig19258.6167.1 ID=mRNA_Ecto-sp13_S_contig19258.6167.1|Name=mRNA_Ecto-sp13_S_contig19258.6167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19258:1104..1745+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTCTGGTGCCGCTTCCCAAGTGAGTTGTTTCCCTTGATACTTAT
ATACTCAACTACGGCAACAGCTGTTAGACTAGAGCTTACAACAAGCAGCA
GGTCTTGGCGCAAGCATGTTGTGTGTCGTCGATGCCGTTGTGCCGGCGGG
GGTGCACATGCACGAATTTATTCAATTCGGTGTGCACTATCGGATGTGCG
GCTTTGTGTGTTCAGGGGCGAAAAAATTGAGGTAACGAGTCGGGATGTCG
GGTGCGCCATTGCGGTCTTTGCCCCTCTGCTGTGTCTCGTGACATGCATT
CAGCAGCAGGTGCGGCTCACGGCGGACAGCAAGCAGTCAGTGCGTTGCTG
CCGGGAAGGGCGGCGACGCGGGTACATTTATTCACCTAGCGTTTGA
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