mRNA_Ecto-sp13_S_contig1925.6165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1925.6165.1 vs. uniprot
Match: A0A6H5JD13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD13_9PHAE) HSP 1 Score: 1256 bits (3250), Expect = 0.000e+0 Identity = 731/910 (80.33%), Postives = 776/910 (85.27%), Query Frame = 2
Query: 134 MGTFCESWDSNWMDGSCDGFQNNSDDSDGGADAFEAALQPLPAWDGLAFSTDKGNAESDIVWGTRQRARYKSAPSPSREHFPGVLDDL-----NLGPAEAGDCTGNVSSTLRTTKLAGDPDRMHLSIGRAWSVTRSTSPEPKPKGHDLETGDTLTHVIRLHRSGSVVVERKGKPNARGGIIGDAGVLRPRQHAGEKNFYPEEEQFWQERCPREADNAVVVQQTAPTASPRVT--NGRAASYDYFTAGAAHRADRPAGKSVPPDGNGPLRGTVPGRPTGGRKTTRFEEEVNDCVQEKCATQGIHMPPPSPRRTARIGRSARAKAITERKRNKSQRRRFPSLRDAESVLRGVLESVEDARST---------EEDSPSAMRTPQEARSSVLRQKVADLVRDETHEERGEYSTGKHGDSIGGTSPGKHRAQTSRQYDGDNGPSPLGICGMGNCSGFGERGAMARNESRQVDRHEQRQCFEHKRA-GVAHSEEXXXXXXXGDDAQESAGRVAELSRRIAMRCXXXXXXXXXREHYHTRLFQEQLRGVRLGAQQVARRTIHNERIRQKQLLLETQERFEEKERGLVAKLERAEESWKVERESLHANTAAAKSEMEKCRRQTRAAAEAGINATKEALEKQRLDLQRGWAEEKGGLRRAAEDALRRAMEGNARAREESAVKAQTAQDSLDAQVRSWKAKAETAERRAAEEREQRRSLEAGVKGALAQEVEKAXXXXXAVLRDLRTKTETDRAKHAEEIERLQEEHRAALLRVHQDKKSLFEVARRQWEEEMQELRQEAAAKAENAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRCQQQQGPSGMAPRSKQDNSTLSPMPRGSYSPRPLLTETAGARSCLDGVEAEMGSQTSPSSVLATPSINANPDKG 2812
MGTFCESWDSNWMDGSC GFQNN+DDSDGGADAFEAALQPLPAWDGLA+ST++GNAE+DIVWGTRQ R +SA SPS EH PG+LDDL N+GP EAGDCT NVSSTLRTTKLAGDPD MH IG+AWS TRSTSPEPKPKGHDLETGD LTHVIRLHR+GSVVVERKGKPNARGGIIGDAG PRQHA E+ Y EEE+FWQ RCP EADNAVVVQ+TAPTASPRVT NGRAA+YDYF A AAH A PAGKSVPP GN LRG PG+PTG R TTRFEE+ + CVQE CATQG H+PPP RRTAR G SARAKAITERKR+K+QRRR SLRDAESVLRGVLESVEDA ST EEDS S M TPQ R SVLRQ VA+L RDE HEERGE STGKHG S+GGTSP K+RAQTSR YDGDN PSPLGI +GN SG ERGAMAR S+QVD+HEQRQC E +RA G+AHSEEXXXXXX G QESAGRVAELSRRIAMRCXXXXXXXXX TRLFQEQLR VRLGAQQVARRTIH+ERIRQKQLLLETQ+RFEEKERGLVAKL AEESWKVERESL+ANTAAAKSE+EKCRRQ RAAAEAG+NA++EALEKQRLDLQRGWAEEKGGLRRAAEDALRRAMEGNARAREE+A KAQ AQDSLDAQVRSWKAK ETAERRAAEERE+R+ LEAGVKGALAQE XXXXX ERLQEEHRAALLRVHQDKKSLFE ARR+WE+EMQELR+EA AKAE+AATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRCQQQQ PSGMAPRSKQDNSTLSP+PRGSYS RPL++ETAGARSCLDGVEAEMGSQTSPSSVL TPSINANP KG
Sbjct: 1 MGTFCESWDSNWMDGSCGGFQNNADDSDGGADAFEAALQPLPAWDGLAYSTNRGNAENDIVWGTRQSDRDRSAASPSPEHHPGMLDDLDLGAVNVGPDEAGDCTDNVSSTLRTTKLAGDPDGMHPPIGQAWSETRSTSPEPKPKGHDLETGDNLTHVIRLHRTGSVVVERKGKPNARGGIIGDAGAFGPRQHAAEQYSYAEEERFWQARCPPEADNAVVVQRTAPTASPRVTKANGRAANYDYFAAEAAHLAGSPAGKSVPPGGNSSLRGRGPGQPTGRRTTTRFEEKADACVQENCATQGTHVPPP--RRTARKGCSARAKAITERKRDKAQRRRLQSLRDAESVLRGVLESVEDAPSTGEVCRKTAAEEDSYSTMDTPQGERFSVLRQNVANLFRDEAHEERGESSTGKHGGSMGGTSPSKYRAQTSRHYDGDNWPSPLGIRRVGNRSGSRERGAMARGTSQQVDQHEQRQCIEDERAEGLAHSEEXXXXXX-GXXXQESAGRVAELSRRIAMRCXXXXXXXXXXXXSQTRLFQEQLRSVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKERGLVAKLNLAEESWKVERESLNANTAAAKSEVEKCRRQARAAAEAGMNASREALEKQRLDLQRGWAEEKGGLRRAAEDALRRAMEGNARAREEAAKKAQAAQDSLDAQVRSWKAKTETAERRAAEEREKRKGLEAGVKGALAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTERLQEEHRAALLRVHQDKKSLFEAARRKWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRCQQQQEPSGMAPRSKQDNSTLSPLPRGSYSLRPLVSETAGARSCLDGVEAEMGSQTSPSSVLTTPSINANPGKG 907
BLAST of mRNA_Ecto-sp13_S_contig1925.6165.1 vs. uniprot
Match: D7FKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN2_ECTSI) HSP 1 Score: 565 bits (1456), Expect = 4.530e-188 Identity = 353/431 (81.90%), Postives = 375/431 (87.01%), Query Frame = 2
Query: 1421 MGNCSGFGERGAMARNESRQVDRHEQRQCFEHKRAG-VAHSEEXXXXXXX-GDDAQESAGRVAELSRRIAMRCXXXXXXXXXREHYHTRLFQEQLRGVRLGAQQVARRTIHNERIRQKQLLLETQERFEEKERGLVAKLERAEESWKVERESLHANTAAAKSEMEKCRRQTRAAAEAGINATKEALEKQRLDLQRGWAEEKGGLRRAAEDALRRAMEGNARAREESAVKAQTAQDSLDAQVRSWKAKAETAERRAAEEREQRRSLEAGVKGALAQEVEKAXXXXXAVLRDLRTKTETDRAKHAEEIERLQEEHRAALLRVHQDKKSLFEVARRQWEEEMQELRQEAAAKAENAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRCQQQQGPSGMAPRSKQDNSTLSPMPRGSYSPRPLLTETA 2707
+GN SGFGERGAMAR S+QVD+HEQ+QCFE +RAG +AHSEE X GD+ QESAGRVAELSRRI XXXXXXXXX TRLFQEQLRGVRLGAQQVARRTIH+ERIRQKQLLLETQ+RFEEKE+GLVAKLE AEESWK ERESL A+TAAAK E+EKCRRQ RAAAEA N TKEALEKQRLD QRGWAEEKGGLRRAAEDALRRAMEGN R REE+A KAQTAQDSLDAQ+RSWKAKAETAERRA EERE+RR LEAGVKG LAQEVEKAXXXXX DRA HAEEIERLQEEHRA LLRVHQDKKSLFE ARRQWE+EMQELR+EA AKAE+AATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARR QQQQ PSGMAPRSK+DNSTLSP+PRGSYSPRPLL+E +
Sbjct: 80 VGNRSGFGERGAMARGTSQQVDQHEQQQCFEDERAGGLAHSEEEEEDGDXXGDNEQESAGRVAELSRRIXXXXXXXXXXXXXXXRSQTRLFQEQLRGVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKEKGLVAKLELAEESWKAERESLSADTAAAKCEVEKCRRQARAAAEAARNTTKEALEKQRLDFQRGWAEEKGGLRRAAEDALRRAMEGNVREREEAATKAQTAQDSLDAQLRSWKAKAETAERRATEEREKRRGLEAGVKGVLAQEVEKAXXXXXXXXXXXXXXXXXDRATHAEEIERLQEEHRAGLLRVHQDKKSLFEAARRQWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRSQQQQEPSGMAPRSKEDNSTLSPLPRGSYSPRPLLSEVS 510 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1925.6165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1925.6165.1 >prot_Ecto-sp13_S_contig1925.6165.1 ID=prot_Ecto-sp13_S_contig1925.6165.1|Name=mRNA_Ecto-sp13_S_contig1925.6165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=894bp MGTFCESWDSNWMDGSCDGFQNNSDDSDGGADAFEAALQPLPAWDGLAFSback to top mRNA from alignment at Ecto-sp13_S_contig1925:1864..12334- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1925.6165.1 ID=mRNA_Ecto-sp13_S_contig1925.6165.1|Name=mRNA_Ecto-sp13_S_contig1925.6165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1925:1864..12334- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1925:1864..12334- >mRNA_Ecto-sp13_S_contig1925.6165.1 ID=mRNA_Ecto-sp13_S_contig1925.6165.1|Name=mRNA_Ecto-sp13_S_contig1925.6165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2682bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1925:1864..12334- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |