mRNA_Ecto-sp13_S_contig19237.6155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19237.6155.1
Unique NamemRNA_Ecto-sp13_S_contig19237.6155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19237.6155.1 vs. uniprot
Match: A0A6H5JJC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC3_9PHAE)

HSP 1 Score: 583 bits (1502), Expect = 1.500e-202
Identity = 367/443 (82.84%), Postives = 376/443 (84.88%), Query Frame = 1 
Query:    1 NQVEDDGVQAQGGPPSSLKSGQPPLHAKGVSGGGEHPRHPSSMDRLGRLVSRAMATIAKAETTTSAASEGVGLDLRCGGNAAAAAAVTWPTSQPEAPYPDQNDPAA--------AHSGIIGHPTQQQQGEQEIRLTFRKAHSDYIHLREKSRYIDVRCSASIRTLQSVSQAVRAPGRGLHQSYDAYLRAYYFFRAVERSVRAADVQEDAARRELHRASQAARSALRKQTRAEAALRAFDTTGXXXXXXXXXXXXSVNGVSEEMLPPSAQAPPLPPSPSEDXXXXXXXXXXXXXVPKEGRAGTXXXXXXXXXXXXAETAMMPCTTRASLELGLGIARLEARRAFTEKHRAQAVADDALIMVGALTAGDWSLAGEKYDAARTAFHDASRDALSKIQEFEDHALLFKKLMQGKVEIRRQLVLAYEARDAAKVASELAAEAMRTRYA 1305
            NQVEDDGVQAQGGPPSSL+S QPP HAKGVSGGGEHPRHPSSMDRL +LVSRAMATIAKAETTTSAASEGVGLDLRC GNAA    VTWPTSQ EAPYPDQNDP          AHSGIIGHP QQQQGEQEIRL FR+AHSDYIHLREKSR+IDVRCSASIRTLQSVSQAVRAP RGLHQSYDAYLRAYYFFRAVERSVRAADVQE AARREL  ASQAARSALRKQTRAEAALRAFDTTG       XXXXX   GVSEEMLP               XXXXXXXXXXXXX         XXXXXXXXXXXXAETA MPCTTRASLEL  GIARLEARRAFTEKHR QAVA+DALI+VGALTAGDWSLAGE+YDAARTAFHDASRDALSKIQEFEDH LLFKKLMQG+VEIRRQLVLAYEAR AAKVA+ELAAE MRTR A
Sbjct:   91 NQVEDDGVQAQGGPPSSLESRQPPSHAKGVSGGGEHPRHPSSMDRLAKLVSRAMATIAKAETTTSAASEGVGLDLRCSGNAAXXXXVTWPTSQSEAPYPDQNDPTXXXXXXXXXAHSGIIGHPAQQQQGEQEIRLIFRRAHSDYIHLREKSRHIDVRCSASIRTLQSVSQAVRAPERGLHQSYDAYLRAYYFFRAVERSVRAADVQEGAARRELRMASQAARSALRKQTRAEAALRAFDTTGCGSSSSCXXXXXXXXGVSEEMLP------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETATMPCTTRASLELAFGIARLEARRAFTEKHRVQAVANDALILVGALTAGDWSLAGEQYDAARTAFHDASRDALSKIQEFEDHTLLFKKLMQGRVEIRRQLVLAYEARVAAKVAAELAAEEMRTRLA 521
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19237.6155.1 vs. uniprot
Match: D7FHY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY5_ECTSI)

HSP 1 Score: 579 bits (1492), Expect = 1.450e-201
Identity = 366/444 (82.43%), Postives = 377/444 (84.91%), Query Frame = 1 
Query:    1 NQVEDDGVQAQGGPPSSLKSGQPPLHAKGVSGGGEHPRHPSSMDRLGRLVSRAMATIAKAETTTSAASEGVGLDLRCGGNAAAAAAVTWPTSQPEAPYPDQNDPAAA---------HSGIIGHPTQQQQGEQEIRLTFRKAHSDYIHLREKSRYIDVRCSASIRTLQSVSQAVRAPGRGLHQSYDAYLRAYYFFRAVERSVRAADVQEDAARRELHRASQAARSALRKQTRAEAALRAFDTTGXXXXXXXXXXXXSVNGVSEEMLPPSAQAPPLPPSPSEDXXXXXXXXXXXXXVPKEGRAGTXXXXXXXXXXXXAETAMMPCTTRASLELGLGIARLEARRAFTEKHRAQAVADDALIMVGALTAGDWSLAGEKYDAARTAFHDASRDALSKIQEFEDHALLFKKLMQGKVEIRRQLVLAYEARDAAKVASELAAEAMRTRYA 1305
            N+VEDD VQAQGGPPSSL+S QPP HAKG+SGGGEHPRHPSSMDRL RLVSRAM  IAKAETTTSAASEGVGLDLRC GNAAA AAVTWPTSQPEAPYPDQNDP AA         HSGIIGHP QQQQGEQE RLTFR+AHSDYIHLREKSR+IDVRCSASIRTLQSVSQAVRAPGRGLHQSYDAYLRAYYFFRAVERSVRAADVQEDAARREL  ASQAARS LRKQ RAEAALRAFDTTGXXXXXXXXXXXX                          XXXXXXXXXXXXX  KEG    XXXXXXX     AETAMMPC TRASLEL LGIARLEARRAF EKHRAQAVA+DALI+VGALTAGDWSLAGE+YDAARTAFHDASRDALSKIQEFED  LLFKKLMQG+VEIRRQLVLAY+AR+AAKVASELAAEAMRTR A
Sbjct:   54 NKVEDDCVQAQGGPPSSLESRQPPSHAKGISGGGEHPRHPSSMDRLARLVSRAMVAIAKAETTTSAASEGVGLDLRCSGNAAAVAAVTWPTSQPEAPYPDQNDPTAAXXXXXXXXAHSGIIGHPAQQQQGEQETRLTFREAHSDYIHLREKSRHIDVRCSASIRTLQSVSQAVRAPGRGLHQSYDAYLRAYYFFRAVERSVRAADVQEDAARRELRTASQAARSGLRKQARAEAALRAFDTTGXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXXXXKEGXXXXXXXXXXXHEENEAETAMMPCVTRASLELALGIARLEARRAFAEKHRAQAVANDALILVGALTAGDWSLAGEQYDAARTAFHDASRDALSKIQEFEDQTLLFKKLMQGRVEIRRQLVLAYKAREAAKVASELAAEAMRTRLA 485
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19237.6155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJC3_9PHAE1.500e-20282.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY5_ECTSI1.450e-20182.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19237contigEcto-sp13_S_contig19237:1685..2995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1311
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006370.1
Cds size1311
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.0682418-CDS-Ecto-sp13_S_contig19237:1684..29951681462979.0682418-CDS-Ecto-sp13_S_contig19237:1684..2995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19237 1685..2995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19237.6155.1prot_Ecto-sp13_S_contig19237.6155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19237 1685..2995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19237.6155.1

>prot_Ecto-sp13_S_contig19237.6155.1 ID=prot_Ecto-sp13_S_contig19237.6155.1|Name=mRNA_Ecto-sp13_S_contig19237.6155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=437bp
NQVEDDGVQAQGGPPSSLKSGQPPLHAKGVSGGGEHPRHPSSMDRLGRLV
SRAMATIAKAETTTSAASEGVGLDLRCGGNAAAAAAVTWPTSQPEAPYPD
QNDPAAAHSGIIGHPTQQQQGEQEIRLTFRKAHSDYIHLREKSRYIDVRC
SASIRTLQSVSQAVRAPGRGLHQSYDAYLRAYYFFRAVERSVRAADVQED
AARRELHRASQAARSALRKQTRAEAALRAFDTTGGGSSSSSSSCSSSVNG
VSEEMLPPSAQAPPLPPSPSEDQAPPLPPSPSEDSVPKEGRAGTAGRERE
EHEQHEAETAMMPCTTRASLELGLGIARLEARRAFTEKHRAQAVADDALI
MVGALTAGDWSLAGEKYDAARTAFHDASRDALSKIQEFEDHALLFKKLMQ
GKVEIRRQLVLAYEARDAAKVASELAAEAMRTRYAVA
back to top

mRNA from alignment at Ecto-sp13_S_contig19237:1685..2995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19237.6155.1 ID=mRNA_Ecto-sp13_S_contig19237.6155.1|Name=mRNA_Ecto-sp13_S_contig19237.6155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19237:1685..2995+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCAGGTGGAGGACGATGGTGTCCAAGCACAGGGCGGCCCACCTTCTTC
TCTGAAATCTGGCCAGCCCCCGTTGCACGCCAAGGGCGTCAGCGGTGGCG
GCGAACACCCGCGCCATCCTTCGTCGATGGACAGGCTGGGAAGGCTCGTG
TCGCGAGCGATGGCGACGATAGCGAAGGCTGAAACCACGACATCGGCAGC
CTCGGAGGGTGTGGGGCTTGACCTCCGCTGCGGTGGCAACGCTGCCGCTG
CCGCCGCCGTCACATGGCCAACATCGCAGCCGGAAGCCCCCTACCCCGAT
CAGAACGACCCCGCCGCCGCCCATAGCGGCATCATCGGCCACCCCACGCA
GCAGCAGCAGGGAGAGCAAGAAATCCGCTTGACGTTTCGCAAGGCCCACT
CCGACTACATCCACCTGCGCGAAAAGTCCCGCTACATCGACGTCCGTTGC
TCGGCATCTATCAGAACTCTGCAGAGCGTGTCCCAGGCCGTCCGGGCGCC
CGGACGAGGGCTGCACCAGTCGTACGATGCCTACCTCCGCGCGTACTACT
TCTTTCGGGCGGTCGAAAGGTCGGTCCGCGCCGCCGACGTGCAGGAGGAC
GCGGCTAGGCGCGAGCTCCATAGGGCGAGCCAGGCCGCCCGGTCGGCCCT
AAGGAAGCAAACCCGGGCCGAGGCGGCGCTACGGGCGTTCGATACCACCG
GCGGTGGAAGCAGCAGCTCGTCCTCTTCTTGTTCTTCCTCCGTCAACGGC
GTCAGCGAGGAGATGCTACCGCCGTCGGCGCAAGCGCCGCCACTGCCGCC
GTCACCGTCGGAGGATCAAGCGCCGCCACTGCCGCCGTCACCGTCGGAGG
ATTCGGTCCCAAAAGAGGGAAGAGCGGGCACAGCAGGAAGAGAGCGCGAA
GAGCACGAGCAACACGAAGCCGAGACGGCGATGATGCCCTGCACCACCCG
CGCGAGCTTAGAGCTCGGCCTCGGGATCGCCCGTCTCGAGGCGAGGCGAG
CCTTCACCGAGAAGCACCGCGCGCAGGCCGTGGCCGACGACGCGCTGATC
ATGGTCGGCGCTCTCACGGCCGGCGACTGGTCTCTCGCGGGCGAGAAGTA
CGACGCGGCCAGAACCGCCTTCCACGATGCTTCGAGGGACGCGCTTTCCA
AGATCCAGGAGTTCGAGGACCACGCCCTGTTGTTTAAGAAGCTCATGCAA
GGCAAGGTTGAGATCCGGCGGCAGCTGGTCTTGGCGTACGAGGCTCGGGA
CGCGGCGAAAGTGGCGTCGGAGTTGGCGGCGGAGGCAATGAGAACCAGGT
ACGCTGTTGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19237:1685..2995+

>mRNA_Ecto-sp13_S_contig19237.6155.1 ID=mRNA_Ecto-sp13_S_contig19237.6155.1|Name=mRNA_Ecto-sp13_S_contig19237.6155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19237:1685..2995+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCAGGTGGAGGACGATGGTGTCCAAGCACAGGGCGGCCCACCTTCTTC
TCTGAAATCTGGCCAGCCCCCGTTGCACGCCAAGGGCGTCAGCGGTGGCG
GCGAACACCCGCGCCATCCTTCGTCGATGGACAGGCTGGGAAGGCTCGTG
TCGCGAGCGATGGCGACGATAGCGAAGGCTGAAACCACGACATCGGCAGC
CTCGGAGGGTGTGGGGCTTGACCTCCGCTGCGGTGGCAACGCTGCCGCTG
CCGCCGCCGTCACATGGCCAACATCGCAGCCGGAAGCCCCCTACCCCGAT
CAGAACGACCCCGCCGCCGCCCATAGCGGCATCATCGGCCACCCCACGCA
GCAGCAGCAGGGAGAGCAAGAAATCCGCTTGACGTTTCGCAAGGCCCACT
CCGACTACATCCACCTGCGCGAAAAGTCCCGCTACATCGACGTCCGTTGC
TCGGCATCTATCAGAACTCTGCAGAGCGTGTCCCAGGCCGTCCGGGCGCC
CGGACGAGGGCTGCACCAGTCGTACGATGCCTACCTCCGCGCGTACTACT
TCTTTCGGGCGGTCGAAAGGTCGGTCCGCGCCGCCGACGTGCAGGAGGAC
GCGGCTAGGCGCGAGCTCCATAGGGCGAGCCAGGCCGCCCGGTCGGCCCT
AAGGAAGCAAACCCGGGCCGAGGCGGCGCTACGGGCGTTCGATACCACCG
GCGGTGGAAGCAGCAGCTCGTCCTCTTCTTGTTCTTCCTCCGTCAACGGC
GTCAGCGAGGAGATGCTACCGCCGTCGGCGCAAGCGCCGCCACTGCCGCC
GTCACCGTCGGAGGATCAAGCGCCGCCACTGCCGCCGTCACCGTCGGAGG
ATTCGGTCCCAAAAGAGGGAAGAGCGGGCACAGCAGGAAGAGAGCGCGAA
GAGCACGAGCAACACGAAGCCGAGACGGCGATGATGCCCTGCACCACCCG
CGCGAGCTTAGAGCTCGGCCTCGGGATCGCCCGTCTCGAGGCGAGGCGAG
CCTTCACCGAGAAGCACCGCGCGCAGGCCGTGGCCGACGACGCGCTGATC
ATGGTCGGCGCTCTCACGGCCGGCGACTGGTCTCTCGCGGGCGAGAAGTA
CGACGCGGCCAGAACCGCCTTCCACGATGCTTCGAGGGACGCGCTTTCCA
AGATCCAGGAGTTCGAGGACCACGCCCTGTTGTTTAAGAAGCTCATGCAA
GGCAAGGTTGAGATCCGGCGGCAGCTGGTCTTGGCGTACGAGGCTCGGGA
CGCGGCGAAAGTGGCGTCGGAGTTGGCGGCGGAGGCAATGAGAACCAGGT
ACGCTGTTGCT
back to top