mRNA_Ecto-sp13_S_contig19215.6145.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19215.6145.1
Unique NamemRNA_Ecto-sp13_S_contig19215.6145.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19215.6145.1 vs. uniprot
Match: A0A6H5KI06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI06_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 7.690e-34
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 QMSLFMFSSPSASXXXXXXXXX-VVAYSVLWPLRRLRASEEATLDLLRSTAWAGATSVAARGAFVRGLRLPCSLQDRHEFPTGTHT 255
            QMSLFMFSSPSAS  XXXXXXX V+AYSVLWPLRRLRASEEATLDLLRSTAWAGATSVAARGAFVRGLRLPCSL DRHEFP GTHT
Sbjct:  236 QMSLFMFSSPSASVGXXXXXXXXVIAYSVLWPLRRLRASEEATLDLLRSTAWAGATSVAARGAFVRGLRLPCSL-DRHEFPAGTHT 320
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BLAST of mRNA_Ecto-sp13_S_contig19215.6145.1 vs. uniprot
Match: D7G2G7_ECTSI (Predicted: Tubulin-tyrosine ligase-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G7_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 6.800e-33
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 QMSLFMFSSPSASXXXXXXXXXVVAYSVLWPLRRLRASEEATLDLLRSTAWAGATSVAARGAFVRGLRLPCSLQDRHEFPTGTHT 255
            QMSLFMFSS SA XXXXXXXXXVVAYSVLWPLRRLRASEEATLDLLRSTAWAGATSVAARGAFVRGLRLPCSL DRHEFP GT+T
Sbjct:  129 QMSLFMFSSQSAXXXXXXXXXXVVAYSVLWPLRRLRASEEATLDLLRSTAWAGATSVAARGAFVRGLRLPCSL-DRHEFPAGTNT 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19215.6145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KI06_9PHAE7.690e-3493.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2G7_ECTSI6.800e-3394.12Predicted: Tubulin-tyrosine ligase-related protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19215contigEcto-sp13_S_contig19215:1135..1908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score130.2
Seed ortholog evalue8.9e-28
Seed eggNOG ortholog2880.D7G2G7
Model size497
KEGG koko:K16609
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ATP binding
EggNOG OGsKOG2155@1,KOG2155@2759
Ec32 ortholog descriptionPredicted: Tubulin-tyrosine ligase-related protein
Ec32 orthologEc-00_005910.1
Cds size492
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.3277028-CDS-Ecto-sp13_S_contig19215:1134..14101681462978.3277028-CDS-Ecto-sp13_S_contig19215:1134..1410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19215 1135..1410 -
1681462978.341638-CDS-Ecto-sp13_S_contig19215:1689..19051681462978.341638-CDS-Ecto-sp13_S_contig19215:1689..1905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19215 1690..1905 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.3558528-UTR-Ecto-sp13_S_contig19215:1905..19081681462978.3558528-UTR-Ecto-sp13_S_contig19215:1905..1908Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19215 1906..1908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19215.6145.1prot_Ecto-sp13_S_contig19215.6145.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19215 1135..1905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19215.6145.1

>prot_Ecto-sp13_S_contig19215.6145.1 ID=prot_Ecto-sp13_S_contig19215.6145.1|Name=mRNA_Ecto-sp13_S_contig19215.6145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MSLFMFSSPSASGGGGGGGGGVVAYSVLWPLRRLRASEEATLDLLRSTAW
AGATSVAARGAFVRGLRLPCSLQDRHEFPTGTHTHHHTDHESLSLPRDRL
AKRHRRMNASANEYRARLAATATAATTATGTVTPVVPVAVQAPLPPPPLS
SGVGTAALSPPAGS
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mRNA from alignment at Ecto-sp13_S_contig19215:1135..1908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19215.6145.1 ID=mRNA_Ecto-sp13_S_contig19215.6145.1|Name=mRNA_Ecto-sp13_S_contig19215.6145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19215:1135..1908- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGTCTCTCTTCATGTTCAGCAGCCCGAGCGCCTCCGGCGGCGGCGG
CGGCGGCGGCGGTGGTGTCGTCGCGTACTCCGTCCTGTGGCCGCTGCGGC
GCCTACGGGCGTCTGAGGAGGCCACGCTGGACCTCTTGCGGTCGACGGCC
TGGGCAGGGGCAACGAGCGTCGCGGCTCGCGGGGCCTTCGTCCGTGGGCT
TCGTCTTCCGTGCTCCCTGGTGGGTGGAGAGGATGGGTTGTCGGCCGTGA
GTCGTGAAACGGCGGTGGTGGTTATCGCTGTCATTGCCAAATTTATTTTG
TAAGTTGGCTCGAACACTTCGAATCGACTTAACTGACAACTAGGGCGCTG
AGAAGGCCAGCGGTGTACATTCAGGACTGCTGTCATCATCGTGATCATAC
ATGAGCGCGAGAGAGGCGTGTTATCGTCGAAAGGAACTGTCTCGCGCCGT
GTTGCAGCCTGCGTGCCGATCCTTAACACCCTGGCGCAACGTTACCAGCA
GGACCGACACGAGTTTCCGACAGGTACCCACACCCACCACCACACCGATC
ACGAGTCCCTGAGCCTGCCCCGAGACCGCCTCGCCAAACGGCATCGCCGC
ATGAACGCCTCGGCGAACGAGTACCGTGCCCGGCTTGCCGCCACTGCTAC
CGCCGCCACCACCGCCACCGGCACAGTAACGCCGGTGGTGCCCGTCGCCG
TGCAAGCTCCCCTTCCCCCACCTCCCCTATCGTCAGGCGTGGGCACTGCT
GCACTTTCTCCGCCTGCCGGTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19215:1135..1908-

>mRNA_Ecto-sp13_S_contig19215.6145.1 ID=mRNA_Ecto-sp13_S_contig19215.6145.1|Name=mRNA_Ecto-sp13_S_contig19215.6145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19215:1135..1908- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTCTTCATGTTCAGCAGCCCGAGCGCCTCCGGCGGCGGCGGCGG
CGGCGGCGGTGGTGTCGTCGCGTACTCCGTCCTGTGGCCGCTGCGGCGCC
TACGGGCGTCTGAGGAGGCCACGCTGGACCTCTTGCGGTCGACGGCCTGG
GCAGGGGCAACGAGCGTCGCGGCTCGCGGGGCCTTCGTCCGTGGGCTTCG
TCTTCCGTGCTCCCTGCAGGACCGACACGAGTTTCCGACAGGTACCCACA
CCCACCACCACACCGATCACGAGTCCCTGAGCCTGCCCCGAGACCGCCTC
GCCAAACGGCATCGCCGCATGAACGCCTCGGCGAACGAGTACCGTGCCCG
GCTTGCCGCCACTGCTACCGCCGCCACCACCGCCACCGGCACAGTAACGC
CGGTGGTGCCCGTCGCCGTGCAAGCTCCCCTTCCCCCACCTCCCCTATCG
TCAGGCGTGGGCACTGCTGCACTTTCTCCGCCTGCCGGTAGC
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