mRNA_Ecto-sp13_S_contig19208.6141.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19208.6141.1
Unique NamemRNA_Ecto-sp13_S_contig19208.6141.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: A0A6H5K4G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G0_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 9.660e-62
Identity = 114/139 (82.01%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    4 RWDTWTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTRSEARP--KKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGNCVKAFSRRASA 414
            RWDTWTPT                 KRS EFE++NPQFCKEMVDDMKTRSEARP  KKDSEAT ARLKGNRFYKAKRWE+ALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDG CVKAFSRRASA
Sbjct:   72 RWDTWTPTXXXXXXXXXXXXXXXXXKRSKEFEDNNPQFCKEMVDDMKTRSEARPVEKKDSEATTARLKGNRFYKAKRWEKALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGKCVKAFSRRASA 210          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: D8LU54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU54_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 3.430e-59
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 1
Query:   79 KRSTEFEESNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGNCVKAFSRRASA 414
            KRS EFEE+NPQFCKEMVDDMKTRSEA  KKDSEAT ARLKGNRFYKAKRWE+ALELYMTSLKARPYAVNTLANVAQTLIKLERWLD VEFCDRALHVDG CVKAFSRRASA
Sbjct:  210 KRSKEFEENNPQFCKEMVDDMKTRSEASEKKDSEATTARLKGNRFYKAKRWEKALELYMTSLKARPYAVNTLANVAQTLIKLERWLDVVEFCDRALHVDGTCVKAFSRRASA 321          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: A0A835Z620_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z620_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.570e-32
Identity = 65/130 (50.00%), Postives = 90/130 (69.23%), Query Frame = 1
Query:    4 RWDTWTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGNCVKA 393
            RW+TWTP DPAT  E  ++E EED KR+  FE SNP FC+E  +D + R  AR K+ + A + RLKGNR++ A+++++AL LYM SL+  PY    L+N A   I+L++W DA+EFC+R LHV+   VKA
Sbjct:  203 RWETWTPDDPATQEEVAQKEAEEDAKRNAAFEASNPDFCREFSEDAQARQRAREKRANTANSLRLKGNRYFNARQYQKALGLYMDSLRDEPYCAAVLSNAAMAHIRLKQWGDALEFCNRTLHVEPANVKA 332          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: A0A8J2S7A7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7A7_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.670e-31
Identity = 70/143 (48.95%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    1 GRWDTWTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVD--GNC---VKAFSRRASA 414
            GRW TWTP+DPA+L E +E E ++  K + EFE++N  FC   + D K R ++  KKD  A   RLKGNR++KAK+++EAL+LY  SL  RPY   TL NVAQ  +K   W DA+EFC RA+ +   G      KA SRRA+A
Sbjct:  218 GRWSTWTPSDPASLEEQQELERKKTEKENAEFEKNNKDFCDNFIADQKKREKSNAKKDETAGGKRLKGNRYFKAKKFDEALKLYRESLSVRPYEKATLLNVAQVYLKKRAWDDALEFCHRAVRIGRRGGADFHAKALSRRATA 360          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: A0A7S2WW51_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW51_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.720e-30
Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    4 RWDTWTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGNCVKAFSRRASA 414
            RW+     DPA+ AE +E E E+D K + EFE+ NP FC +  +D   R +A+ K    A   RLKGNRF+KAK+++EALE YM SLK +PY + TLANVAQ  + L +W DA+EF DR L++D   VKA  RR++A
Sbjct:  161 RWELDITDDPASQAEQQEAEAEKDAKEAAEFEKMNPDFCSQFKEDQARRQKAQAKAAENANVLRLKGNRFFKAKKYKEALERYMQSLKEKPYVIPTLANVAQVHLNLGQWDDALEFADRTLYLDPVNVKARVRRSTA 297          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: A0A8J5JDL3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JDL3_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.220e-28
Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    7 WDTWTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGNCVKAFSRRASA 414
            W+ W P DP +L E  ERE E D+ R+ EFE +NP+FC +   DM+ R              + KGNRFYK K++EEA++ YM +L A P+ V  LAN AQ  ++L++  D VEFC R L VD N VKA SRRA+A
Sbjct:  139 WNQWVPEDPVSLQEKAEREAELDKLRNREFENTNPEFCNQFKKDMEERQRXXXXXXXXXXXLKQKGNRFYKKKQYEEAIQSYMEALTASPFNVAVLANTAQCYLRLDQLDDCVEFCTRTLFVDENYVKALSRRATA 274          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: F0Y6W2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6W2_AURAN)

HSP 1 Score: 117 bits (293), Expect = 7.560e-28
Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
Query:    1 GRWDT--WTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGN-----CVKAFSRRASA 414
            GRW+   WTP DPATL E    E+E+  K +  FE++N +FC   + DM+ R +++ KKD  ATA RLKGNR++KAK++++AL LY  SL  RPY   TL NVAQ  +K+  W DA+EF  RA+ V          KA +RRA+A
Sbjct: 1321 GRWNEGRWTPKDPATLEEEAAVEKEKTDKENAVFEKNNKEFCDNFMADMEVREKSKQKKDDTATATRLKGNRYFKAKKYDDALRLYRESLGVRPYEKTTLLNVAQVFLKMALWDDALEFAKRAVVVSRREGPDFHAKALARRAAA 1465          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: A0A329S2Y5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S2Y5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.470e-27
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    7 WDTWTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGNCVKAFSRRAS 411
            W+ W P DP +L E  ERE E D+ R+ EFE +NP+FC +   DM+ R              + KGNRFYK K++EEA++ YM +L A P+ V  LAN AQ  ++L++  D VEFC R L VD N VKA SRRA+
Sbjct:  139 WNQWVPEDPVSLQEKAEREAELDKLRNREFENTNPEFCNQFKKDMEERQRXXXXXXXXXXXLKQKGNRFYKKKQYEEAIQSYMEALTASPFNVAVLANTAQCYLRLDQLDDCVEFCTRTLFVDENYVKALSRRAT 273          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: D0NKV1_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NKV1_PHYIT)

HSP 1 Score: 112 bits (279), Expect = 5.490e-26
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    7 WDTWTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGNCVKAFSRRASA 414
            W+ W P D  +L E  ER  E ++ R+ EFE+ NP+FC +   DM+ R  ++ +K   A   R KGN FYK K++ +A++ YM +LKA P+ V  LAN+AQ  ++L++  D VE C R L+VD   VKA SRRA+A
Sbjct:  139 WNQWVPEDSVSLQEKAERNAELEKLRNREFEDINPEFCNQFKKDMEERQRSQEEKARTAERLRQKGNHFYKKKQYPDAIKTYMEALKASPFNVAVLANIAQCYLRLDQLDDCVEVCTRTLYVDEGYVKALSRRATA 274          
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Match: A0A7S2B152_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B152_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.100e-24
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  103 SNPQFCKEMVDDMKTRSEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLANVAQTLIKLERWLDAVEFCDRALHVDGNCVKAFSRRASA 414
            +NP FC E   D + R++++ K+   A A RLKGNR++KAKR++EAL LYM SLK RPY   TL N  Q  +K   W DA+EF DRA++++ + VKA +RR  A
Sbjct:    2 NNPDFCTEFKADAEKRAKSQEKQTETAVALRLKGNRYFKAKRYQEALGLYMDSLKERPYCYVTLTNCCQAHLKRTEWADALEFADRAIYLEPSTVKARTRRVVA 105          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19208.6141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4G0_9PHAE9.660e-6282.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU54_ECTSI3.430e-5992.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z620_9STRA2.570e-3250.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2S7A7_9STRA1.670e-3148.95Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2WW51_9STRA3.720e-3049.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5JDL3_9STRA4.220e-2847.06Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
F0Y6W2_AURAN7.560e-2846.90Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A329S2Y5_9STRA2.470e-2746.67Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
D0NKV1_PHYIT5.490e-2644.12Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A7S2B152_9STRA6.100e-2449.04Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19208contigEcto-sp13_S_contig19208:680..1730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score204.5
Seed ortholog evalue3.1e-50
Seed eggNOG ortholog2880.D8LU54
Model size414
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2DZZE@1,2S7FK@2759
Cds size414
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.0245166-CDS-Ecto-sp13_S_contig19208:679..7841681462978.0245166-CDS-Ecto-sp13_S_contig19208:679..784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19208 680..784 -
1681462978.0366724-CDS-Ecto-sp13_S_contig19208:1149..12931681462978.0366724-CDS-Ecto-sp13_S_contig19208:1149..1293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19208 1150..1293 -
1681462978.0466466-CDS-Ecto-sp13_S_contig19208:1565..17301681462978.0466466-CDS-Ecto-sp13_S_contig19208:1565..1730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19208 1566..1730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19208.6141.1prot_Ecto-sp13_S_contig19208.6141.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19208 680..1730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19208.6141.1

>prot_Ecto-sp13_S_contig19208.6141.1 ID=prot_Ecto-sp13_S_contig19208.6141.1|Name=mRNA_Ecto-sp13_S_contig19208.6141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
GRWDTWTPTDPATLAEAEEREEEEDRKRSTEFEESNPQFCKEMVDDMKTR
SEARPKKDSEATAARLKGNRFYKAKRWEEALELYMTSLKARPYAVNTLAN
VAQTLIKLERWLDAVEFCDRALHVDGNCVKAFSRRASA
back to top

mRNA from alignment at Ecto-sp13_S_contig19208:680..1730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19208.6141.1 ID=mRNA_Ecto-sp13_S_contig19208.6141.1|Name=mRNA_Ecto-sp13_S_contig19208.6141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1051bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19208:680..1730- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGGTGGGACACATGGACCCCAACGGACCCAGCAACATTGGCAGAAGC AGAGGAACGCGAGGAAGAGGAAGACCGAAAGAGAAGCACGGAGTTCGAGG AAAGCAACCCGCAATTCTGCAAAGAGATGGTGGACGACATGAAGACTCGC TCGGAAGCCAGGCCAGTGTACCACGGATCGGTCGTTTCATATAATCATTC TGCCTGCCGTACCGCACAGTGCGTAGCGTGCCTACCGAACGTCGTGAGAT CTGTTCTGGGATTGTCGAGATTGTGAGTTGTGTTACATAAATTTCTGCGT GACGCACAACGCACGTGTTGCAGCTGCCAGTTCAGCATAGCACTCTTCGA AGCACACCCAAAACACACAAATCCTGCCTTATTTATCTCGGTTCCTGTCT GTGTACCGTCCTTACCTCGTCGAAAATGAGCAGTGAGAAGAAGGACTCGG AAGCAACGGCCGCGCGGCTCAAGGGCAACCGGTTTTACAAGGCAAAGCGC TGGGAGGAGGCACTCGAGCTGTACATGACAAGCCTCAAGGCCAGGCCGTA CGCCGTCAACACGCTAGCTAATGTTGCTCAGGTGGGAGATTATTCCGCCC CCTTTGTGCGTGCGGGCGGCAACAATGGGGCCAAGAGATGGTTCATACTG TTTGAGCTACAAGAGAACAAAAAAATACCCTTAAAATTTCCATCTGGAGT GTAGCAATCCAAACCCCCGGTCTTCGTAGAATGCACCACCCTGGCGGTGT AGAAAGAGCGGGGTACACTGAAAGGATCTGTCCCTGGCTCTATCAAATGG GCGTACGAACCCGGCTATACGTCTTTGCAAAGTAGAAACGACCTGAATCG TCTCTTTGTTCTCCCGTCGGTGGGGCTGTTGATAGCGACAACGTTATCTT TGGCGAAACTACAAGCGAAAGACACGCGCGTGCTGTGCTTCTGCAGACCT TGATCAAGTTGGAGCGGTGGCTAGATGCGGTGGAGTTCTGTGATCGCGCG CTTCACGTGGACGGTAATTGTGTCAAGGCTTTCTCGCGGAGGGCATCGGC G
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19208:680..1730-

>mRNA_Ecto-sp13_S_contig19208.6141.1 ID=mRNA_Ecto-sp13_S_contig19208.6141.1|Name=mRNA_Ecto-sp13_S_contig19208.6141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19208:680..1730- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGGTGGGACACATGGACCCCAACGGACCCAGCAACATTGGCAGAAGC
AGAGGAACGCGAGGAAGAGGAAGACCGAAAGAGAAGCACGGAGTTCGAGG
AAAGCAACCCGCAATTCTGCAAAGAGATGGTGGACGACATGAAGACTCGC
TCGGAAGCCAGGCCAAAGAAGGACTCGGAAGCAACGGCCGCGCGGCTCAA
GGGCAACCGGTTTTACAAGGCAAAGCGCTGGGAGGAGGCACTCGAGCTGT
ACATGACAAGCCTCAAGGCCAGGCCGTACGCCGTCAACACGCTAGCTAAT
GTTGCTCAGACCTTGATCAAGTTGGAGCGGTGGCTAGATGCGGTGGAGTT
CTGTGATCGCGCGCTTCACGTGGACGGTAATTGTGTCAAGGCTTTCTCGC
GGAGGGCATCGGCG
back to top