mRNA_Ecto-sp13_S_contig19186.6129.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19186.6129.1
Unique NamemRNA_Ecto-sp13_S_contig19186.6129.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19186.6129.1 vs. uniprot
Match: D8LPV0_ECTSI (Acyl-CoA-binding domain-containing protein 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV0_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 2.590e-71
Identity = 127/144 (88.19%), Postives = 129/144 (89.58%), Query Frame = 1 
Query:   49 AGGIANMRVVNASKVIGKGRSAGKSPHATRKPKRVKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQA-----HYTCVCAFSGAKVVAVPEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAHHPE 465
            AGGIANMRVVNASKVIGKGRSAGKSPHATRKPKRVKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQA       +        +VVAVPEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAHHPE
Sbjct:  238 AGGIANMRVVNASKVIGKGRSAGKSPHATRKPKRVKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQAFRLEEQVSEALEKDYGQVVAVPEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAHHPE 381
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BLAST of mRNA_Ecto-sp13_S_contig19186.6129.1 vs. uniprot
Match: A0A6H5KAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT0_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.640e-63
Identity = 122/168 (72.62%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:   49 AGGIANMRVVNASKVIGKGRSAGKSPHATRKPKRVKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQA------------------------HYTCVCAFSGAKVVAVP-----EVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAHHPE 465
            AGGIANMRVVN SKVIGKGRSAGKSPHAT KPKRVKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQA                          +        K+ + P     EVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAHHPE
Sbjct:   32 AGGIANMRVVNPSKVIGKGRSAGKSPHATSKPKRVKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQAFRLEEQVAEALEKDYGQGIQEKDSRTSLELTLYQKKLSSPPHNVDVEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAHHPE 199
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BLAST of mRNA_Ecto-sp13_S_contig19186.6129.1 vs. uniprot
Match: A0A485L9M9_9STRA (Aste57867_18277 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9M9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.880e-18
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:  157 GAAETEGQGVTSWSSDDLRVKYRAEREREEAYQAHYTCVCAFSGAKVVAVPEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAH 456
            G  E E QG TSWSSDD+  KYRAERERE A+ A  T     S      VP ++RHPLY  Y++ +E +NT     + A+N+ K+F+ DV+ VWLTNL H
Sbjct:  219 GPGEMELQGATSWSSDDIHFKYRAEREREAAWVASTTLQATDSPV----VPILERHPLYDKYFHTVETDNTYVQNLSRAKNQTKQFVLDVNRVWLTNLDH 314
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BLAST of mRNA_Ecto-sp13_S_contig19186.6129.1 vs. uniprot
Match: A0A8J2SJV8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJV8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.950e-6
Identity = 35/102 (34.31%), Postives = 48/102 (47.06%), Query Frame = 1 
Query:  163 AETEGQGVTSWSSDDLRVKYRAEREREEAYQAHYTCVCAFSGA----KVVAVPEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAH 456
            A  E  G T WS +DL  KYR +  R+ A+          S       +++V  + RHPL        E  N  C+ R  AR   +RF+ +VH +WLTNL H
Sbjct:  185 ANIEKTGPTIWSVEDLNSKYRNKLLRKSAHHVSLKVQELQSELVKEESLISVVGLTRHPLLALCDQHTETANLLCIGRGRARCVARRFVLEVHQIWLTNLDH 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19186.6129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LPV0_ECTSI2.590e-7188.19Acyl-CoA-binding domain-containing protein 6 n=1 T... [more]
A0A6H5KAT0_9PHAE1.640e-6372.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485L9M9_9STRA1.880e-1849.00Aste57867_18277 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J2SJV8_9STRA2.950e-634.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19186contigEcto-sp13_S_contig19186:553..1985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score245.7
Seed ortholog evalue1.4e-62
Seed eggNOG ortholog2880.D8LPV0
Model size466
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs2CZ08@1,2S7JB@2759
Cds size465
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462977.0496645-CDS-Ecto-sp13_S_contig19186:552..7601681462977.0496645-CDS-Ecto-sp13_S_contig19186:552..760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19186 553..760 -
1681462977.0615163-CDS-Ecto-sp13_S_contig19186:1228..13951681462977.0615163-CDS-Ecto-sp13_S_contig19186:1228..1395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19186 1229..1395 -
1681462977.0714319-CDS-Ecto-sp13_S_contig19186:1895..19851681462977.0714319-CDS-Ecto-sp13_S_contig19186:1895..1985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19186 1896..1985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19186.6129.1prot_Ecto-sp13_S_contig19186.6129.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19186 553..1985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19186.6129.1

>prot_Ecto-sp13_S_contig19186.6129.1 ID=prot_Ecto-sp13_S_contig19186.6129.1|Name=mRNA_Ecto-sp13_S_contig19186.6129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
DDPLAGAGGGGEDEDEAGGIANMRVVNASKVIGKGRSAGKSPHATRKPKR
VKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQAHYTCVCAFSGAKVV
AVPEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNL
AHHPE
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mRNA from alignment at Ecto-sp13_S_contig19186:553..1985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19186.6129.1 ID=mRNA_Ecto-sp13_S_contig19186.6129.1|Name=mRNA_Ecto-sp13_S_contig19186.6129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1433bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19186:553..1985- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGATCCACTCGCCGGTGCCGGAGGCGGTGGGGAAGATGAGGACGAGGC
CGGGGGCATTGCCAACATGCGAGTCGTCAACGCCTCGAAGGTGTGCGGCG
GCAACCTTGGCGTGCGTGCTTCGCTAGTTTGCCCCGGCAACGGCATGCAC
AAGGCACACGGACAAACGTATTGCCGCCATACCTTGGTTTGTATGTGTCC
ATCATCCTGCTACGGAGAACATGATTGCTGATTCCCCACGACTCATGCAA
GTAGATTTGAGGCAGAAGTCGGGGCATAGTGAGGGGAATCCGAGTATAAT
TTTTCACACTGACACAAACGAAGCCTGTCTACTACCGCAAAGGCGATCAA
CTCCTTTTCAAGCCGTTGCTGAAGGCTCCTGGGGTGTCGTCTACATTATG
CATGTAGATGTTTCCTGTCAGCCATCGGTGGTTTTCATGTCAGCCTATCT
TCAAAATCCTCTCACCTATGGCCCTAAGTTGCCACGACAAAGGACGCCCC
CTTGTTTTTACTACTCATCACCAGCCTCTCCTCACCACCTTTCCACTCGG
TTCGTGCGGCTCCCTCATCCCTCTCTGAATCATACCCAAGGTGATCGGAA
AAGGCCGATCAGCCGGGAAAAGCCCCCACGCCACCAGAAAGCCGAAGAGG
GTTAAGGGCGCGGCAGAAACGGAGGGTCAGGGCGTCACGTCATGGTCCTC
GGATGACCTGAGGGTCAAGTACAGGGCCGAGCGGGAGAGAGAGGAGGCGT
ACCAGGCGTTCCGCCTCGAGGAGCAGGTTGCGGAAGCGCTCGAGAAGGAC
TACGGCCAAGTGAGTGACAGCAAGTGTAATTCTGAAGCAAGAATCCAGCC
GCCCACCGACGAAGAGACTTTATTTCCCGCGCGTAAGGGTTTGCTTCGCT
CGTGTGTGAATTGTTGTGTTTAATGTTTGCCGATTTTGGCCCTTGTATTT
GTCGTTTCATATTTCTTGATCCAGTTGAAAAGGAATGGAATTCTGTTGTC
ACGACCGATCAAAAGCGGCAAGCTAATACTCAAACCCGCTGAGAAAAAGT
ATTTCTAGGGAGACGGGAGAGGTGAAGACGGGGTAGATCGTAAGAACCCA
TCAAGAGGGAATTCAAGCACAAAGAACAGAATCTCCTTGGAGGCAACGCT
ATTTCAAAAGAAGCTATCCTCACTCCCCCACAACGTGGACGTGGGTACGT
ACCGTTAGTTCTGGCGCTTATCTAGTCACTACACCTGTGTGTGCGCTTTT
TCGGGTGCCAAGGTCGTCGCGGTGCCAGAAGTGGACCGGCACCCCCTCTA
CGTCGCCTATTACAACCAGCTGGAGCGAGAGAACACCCGCTGCCTGCTCC
GCGCGAGCGCCCGCAACAAGATGAAGCGCTTTATCACCGACGTGCACACG
GTGTGGCTCACCAACCTCGCCCACCACCCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19186:553..1985-

>mRNA_Ecto-sp13_S_contig19186.6129.1 ID=mRNA_Ecto-sp13_S_contig19186.6129.1|Name=mRNA_Ecto-sp13_S_contig19186.6129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19186:553..1985- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGATCCACTCGCCGGTGCCGGAGGCGGTGGGGAAGATGAGGACGAGGC
CGGGGGCATTGCCAACATGCGAGTCGTCAACGCCTCGAAGGTGATCGGAA
AAGGCCGATCAGCCGGGAAAAGCCCCCACGCCACCAGAAAGCCGAAGAGG
GTTAAGGGCGCGGCAGAAACGGAGGGTCAGGGCGTCACGTCATGGTCCTC
GGATGACCTGAGGGTCAAGTACAGGGCCGAGCGGGAGAGAGAGGAGGCGT
ACCAGGCTCACTACACCTGTGTGTGCGCTTTTTCGGGTGCCAAGGTCGTC
GCGGTGCCAGAAGTGGACCGGCACCCCCTCTACGTCGCCTATTACAACCA
GCTGGAGCGAGAGAACACCCGCTGCCTGCTCCGCGCGAGCGCCCGCAACA
AGATGAAGCGCTTTATCACCGACGTGCACACGGTGTGGCTCACCAACCTC
GCCCACCACCCGGAG
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