mRNA_Ecto-sp13_S_contig19183.6128.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19183.6128.1
Unique NamemRNA_Ecto-sp13_S_contig19183.6128.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: D7G3Y7_ECTSI (Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y7_ECTSI)

HSP 1 Score: 534 bits (1376), Expect = 1.790e-186
Identity = 277/283 (97.88%), Postives = 279/283 (98.59%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVVQLEAMETRSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSELIDS 849
            AYHLKGRRDFSLKMPALVVQLEAMETRSTTCLLVALADGN+RLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAA  GYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQF VSALIPGVSSRHEI ITNIDEGGAAGSVRILVLSPSGPSPLVSAVV+MPLSELIDS
Sbjct:  320 AYHLKGRRDFSLKMPALVVQLEAMETRSTTCLLVALADGNVRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAATAGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFMVSALIPGVSSRHEIAITNIDEGGAAGSVRILVLSPSGPSPLVSAVVNMPLSELIDS 602          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A6H5JZZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ3_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 6.120e-111
Identity = 174/187 (93.05%), Postives = 177/187 (94.65%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVVQLEAMETRSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGL 561
            AYHLKGRRDFS+KMP+LVVQLEAMETR       ALADGN+RLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKT GAA  GYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGL
Sbjct:  123 AYHLKGRRDFSIKMPSLVVQLEAMETRC------ALADGNVRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTLGAATAGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGL 303          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A7S0JH86_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JH86_9EUKA)

HSP 1 Score: 260 bits (664), Expect = 1.120e-82
Identity = 143/284 (50.35%), Postives = 195/284 (68.66%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVV---QLEAMETRSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSELI 843
            A+H+KG++ F+L +P+  V   QLE  +TR+   LL+ LA+G +RLY  EK+L+ TL+T EP+ ALRFG Y RE+ AL +V  +G LTI ML R+ADL       + P G PPEQD+PL +PKKTKLYVEQTQR + QA E+HR FQ+DLC LRL+ AR+YVK ITDG QG  +  + +SLRL AQ QGLGP FK+KL LQN G + +T+L    TY+  +Y + +  F +  L+PGV  R +  +  IDE G A ++R+ V S     P++SAVV+MP+S+L+
Sbjct:   33 AFHIKGKKLFTLFLPSAAVCIEQLELQKTRAARALLLGLANGEVRLYQ-EKHLIATLQTGEPLTALRFGAYGREESALMLVGQSGALTIKMLQRQADLNS----ASNPLGPPPEQDVPLSIPKKTKLYVEQTQREREQATEMHRIFQRDLCKLRLSTARSYVKIITDG-QGPVSYTSGSSLRLTAQVQGLGPAFKVKLSLQNTGRKVVTDLVATLTYNAMLYRLRQSLFKIPLLVPGVMLRLDAELECIDEVGGADTIRVFVCSAKSSMPILSAVVNMPMSDLL 310          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A7S3EZY8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZY8_9EUKA)

HSP 1 Score: 243 bits (621), Expect = 2.000e-76
Identity = 132/279 (47.31%), Postives = 187/279 (67.03%), Query Frame = 1
Query:   10 LKGRRDFSLKMPALVVQLEAM---ETRSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSE 837
            L G++ +S+ +PA +  ++ +   +TR+   LLVAL+ G +RLY  EK+L+ TL+  EPI A+RFG Y RE+ AL V+  +G LTI ML R ADL       +   G PPEQD+PL +PKKTKLYVEQTQR + QA E+HR FQ+DLC LRL+ ARAYVK ITDG QG  +  A +++RL AQ QGLGP FK+KLELQN G R +T + V  +Y+  +Y +++  F +  L+PG++ R +  +  +DE G   ++++ V S     P +SA+V+MP+SE
Sbjct:   17 LLGKKMYSIYLPANISCMQVLSLSKTRNIRALLVALSTGELRLYH-EKHLVATLQFSEPITAMRFGAYGREEAALTVIGASGALTIKMLQRLADLEN----SSHSPGPPPEQDVPLSIPKKTKLYVEQTQREREQATEMHRVFQRDLCKLRLSTARAYVKIITDG-QGPMSYSAGSAMRLTAQVQGLGPRFKVKLELQNNGSRTVTGMAVTISYNSMLYRLKQCVFAIPVLVPGLTHRLDAAVECVDERGGTDAIKVFVCSAKSALPALSAIVNMPVSE 289          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A7S0LFK4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LFK4_9EUKA)

HSP 1 Score: 246 bits (628), Expect = 4.400e-74
Identity = 133/283 (47.00%), Postives = 190/283 (67.14%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVVQLEAMET--RSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSELI 843
            A+H+KG++ +SL +P+  V +E +E   R+   LL+ LA+G +R Y  EK+L+ TL+  E +  LRFGPY RE+ +L  +  +G +TI ML R+ADL       A P G PPEQD+PL +PKKTKLYVEQTQR + QA ++HR FQ+DLC LRL+ AR+YVK ITDG QG  +  + +SLRL AQ QGLGP FK+KL LQN G + +T++    TY+  +Y +++  F +  L+PGV  R +  +  +DE G A ++R+ V S     P++SAVV+MP+SE +
Sbjct:  305 AFHIKGKKLYSLFLPSPAVCIEQLELQKRAARALLLGLANGELRCYQ-EKHLIATLQLGETLTGLRFGPYGREESSLICIGESGSITIKMLQRQADLDS----AANPVGPPPEQDVPLSIPKKTKLYVEQTQREREQATDMHRIFQRDLCKLRLSTARSYVKIITDG-QGPVSYTSGSSLRLTAQVQGLGPAFKVKLSLQNTGRKVVTDMVATLTYNAMLYRLKQSLFKIPLLVPGVMLRLDAELECVDENGGADTIRVFVCSAKSSMPILSAVVNMPMSETL 581          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A7S1IQI7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQI7_9EUGL)

HSP 1 Score: 240 bits (612), Expect = 1.790e-71
Identity = 131/284 (46.13%), Postives = 189/284 (66.55%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVVQLEA--MET-RSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSELI 843
            +YH+KG++ +S+ MP  +  + A  MET R+T   +VALA+G IR+Y+A K+L+HTL+T + I  L+FG YARED  L +   +G + I ML R A L   K   A P   PPEQ+IP++VPKKT+LY+EQTQR K    E+HR FQ+DLC LRL  ARAYVK +TDG QG  +  + +SLRL A  QGLGP FKIKL +QN G ++LT +P+ FT+++ IY M      +  L+P +   +E+ +  IDE   A  +R+ V +P+   P+++A+V+MPL++ +
Sbjct:  329 SYHVKGKKQYSVYMPCGITNMTALSMETMRTTKATIVALANGEIRVYNA-KSLIHTLQTNDIITGLKFGKYAREDNTLVIAYRSGTIHIKMLPRLASLEATKGQNAGP---PPEQNIPIRVPKKTRLYIEQTQREKEFGTEMHRVFQRDLCKLRLATARAYVKVLTDG-QGPLSYTSGSSLRLTAHVQGLGPLFKIKLNIQNTGTKSLTAIPIVFTFNQSIYRMPNPTLLLPLLVPSLVYNYEVDVECIDEAAGADVIRVYVCNPNSAIPIITALVNMPLADFL 607          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A8J5XY91_DIALT (BBS1 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XY91_DIALT)

HSP 1 Score: 238 bits (608), Expect = 3.500e-71
Identity = 133/284 (46.83%), Postives = 184/284 (64.79%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVVQLEAMET---RSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSELI 843
            AYH+KG++  SL MPA V  +E +     RS   LLV+L +G +RLY  +K+++ T+   +P   +RFG Y RE+ ALA+V   G L I ML R A+L        AP G PPEQDIPL +PKKT+LYVEQTQR + QA E+HR FQ+DLC LRL  ARAYVK +TDG QG  +     S+RL A  QGLGP FK++L LQN G++ + +L + F+ +  +Y +      +  L+P V+ R +  + +IDE GA+  VR+ V +P+   P++SAVV+MPLSE+I
Sbjct:  298 AYHIKGKKSHSLFMPAPVAAIEVLSLERMRSVKALLVSLHNGEVRLY-VDKSIIATIHLDDPAVGMRFGAYGREEAALAMVGKAGTLVIKMLQRTANLES----SGAPPGPPPEQDIPLAIPKKTRLYVEQTQREREQATEMHRIFQRDLCKLRLNTARAYVKVLTDG-QGAQSYTVGQSVRLTAGVQGLGPLFKLRLNLQNLGNKPVVDLEMTFSANTMLYKLHTHVLQLPLLLPSVTYRCDCDVESIDEAGASDMVRVYVCTPTSKVPVISAVVTMPLSEVI 575          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A7S4FYB0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FYB0_9EUGL)

HSP 1 Score: 238 bits (606), Expect = 1.580e-70
Identity = 128/284 (45.07%), Postives = 189/284 (66.55%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVVQLEA--MET-RSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSELI 843
            +YH+KG++ +S+ +P+ +  + A  MET R+T   +VALA+G IR+Y+  K+L+HTL+T + +  L+FG YARED  L V   +G + I ML R A L   K   + P   PPEQ+IP++VPKKT+LY+EQTQR K    E+HR FQ+DLC LRL  ARAYVK +TDG QG  +  + +SLRL A  QGLGP FKIKL +QN G ++LT +P+ FT+++ IY M      +  L+P +   +E+ +  +DEG  A  +R+ V +P    P+++A+V+MPL++ +
Sbjct:  336 SYHVKGKKQYSVYLPSSITNMVALSMETMRTTKATIVALANGEIRVYNG-KSLIHTLETNDVVMGLKFGKYAREDNTLVVAYRSGTIHIKMLPRLASLEVTKGQTSGP---PPEQNIPIRVPKKTRLYIEQTQREKEFGTEMHRVFQRDLCKLRLATARAYVKVLTDG-QGPLSYTSGSSLRLTAHVQGLGPLFKIKLNIQNTGTKSLTEIPIVFTFNQSIYRMPSPTLLLPLLVPSLVYNYEVDVECVDEGAGADVIRVYVCNPHSAIPIITALVNMPLADFL 614          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A8K1CTH1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTH1_PYTOL)

HSP 1 Score: 231 bits (589), Expect = 2.650e-68
Identity = 135/283 (47.70%), Postives = 182/283 (64.31%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVVQLEAME---TRSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSEL 840
            +YHLKG++++SL MP  ++ +EA     T+ T  +LVA  +G++ LY+ E   + TL T   +  + FG Y RED +L +V   G L++ +L R A L   +    A  G PPEQDIPL +PKKTKLYVEQTQR +  A E+HR FQ+DLC LRLT ARAYVK I DG QG  +    A++RL+AQ QGLGP+F+IKL +QN G +A+T++ VAF YD ++Y   K  F +  +IP V   +   +T I + GAA SV I V       PLVSAVV+MPLSE+
Sbjct:  308 SYHLKGKKNWSLSMPDDIMLIEAFNLRRTKDTRGILVAFKNGDVVLYN-ENIKICTLNTDSSLTGMVFGQYGREDASLVLVQKGGALSLKILKRTASL---EAISEA-AGPPPEQDIPLNIPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTARAYVKIIKDG-QGPVSYSTGAAIRLNAQVQGLGPSFRIKLNVQNAGTKAVTDITVAFHYDHELYRFTKSVFVIPLVIPNVQYTYLADVTCISDAGAADSVYIFVCGKDSCIPLVSAVVNMPLSEV 584          
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Match: A0A024TEN6_9STRA (BBS1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEN6_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.030e-66
Identity = 132/284 (46.48%), Postives = 179/284 (63.03%), Query Frame = 1
Query:    1 AYHLKGRRDFSLKMPALVVQLEAME---TRSTTCLLVALADGNIRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGGAAGSVRILVLSPSGPSPLVSAVVSMPLSELI 843
            +YHLKG++++S+ MP  +V LEAM    T+ T  +L+AL  G I LY  EK  +H+ K +  + A+ FG + RE+ +L +V  TG LT+ +L R ADL       A   G PPEQD+PL VPKKTKLYVEQTQR +  A E+HR FQ+DLC LRLT  R+YVK I DG QG  +    A++RLHA+ QG+GP FKI L+LQN G +  ++ P+A  YD  +Y +      V  L+PGV   + + + ++    AA S+ I V       PLVSAVV+MPLSEL+
Sbjct:  319 SYHLKGKKNWSMAMPHDIVALEAMNLRRTKHTKGILIALRKGEILLYH-EKIKVHSFKIEGSLTAMVFGQFGREEASLVLVHKTGALTLKILQRNADLEA----NATAAGPPPEQDVPLNVPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTVRSYVKVIRDG-QGPVSYATGAAIRLHAKVQGMGPRFKIHLQLQNAGTKFASDAPLALHYDHTLYRVHPSLLIVPLLLPGVLYTYTVDVESVSP--AADSIYIFVCGKGSCVPLVSAVVNMPLSELL 594          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19183.6128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Y7_ECTSI1.790e-18697.88Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZZ3_9PHAE6.120e-11193.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0JH86_9EUKA1.120e-8250.35Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3EZY8_9EUKA2.000e-7647.31Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0LFK4_9EUKA4.400e-7447.00Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1IQI7_9EUGL1.790e-7146.13Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8J5XY91_DIALT3.500e-7146.83BBS1 domain-containing protein n=2 Tax=Diacronema ... [more]
A0A7S4FYB0_9EUGL1.580e-7045.07Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8K1CTH1_PYTOL2.650e-6847.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TEN6_9STRA1.030e-6646.48BBS1 domain-containing protein n=1 Tax=Aphanomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19183contigEcto-sp13_S_contig19183:730..3348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score539.3
Seed ortholog evalue1.1e-150
Seed eggNOG ortholog2880.D7G3Y7
Preferred nameBBS1
Model size852
KEGG koko:K16746
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001085,GO:0001103,GO:0001501,GO:0001664,GO:0001764,GO:0001894,GO:0001895,GO:0003008,GO:0003352,GO:0003356,GO:0003674,GO:0005102,GO:0005113,GO:0005119,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0005930,GO:0006629,GO:0006810,GO:0006892,GO:0006893,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007606,GO:0007608,GO:0007610,GO:0007635,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008594,GO:0009566,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010817,GO:0010970,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016358,GO:0016477,GO:0019953,GO:0021537,GO:0021543,GO:0021544,GO:0021591,GO:0021756,GO:0021761,GO:0021766,GO:0021987,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030534,GO:0030705,GO:0030900,GO:0031090,GO:0031175,GO:0031253,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034464,GO:0034613,GO:0035721,GO:0036064,GO:0040011,GO:0040012,GO:0042048,GO:0042073,GO:0042221,GO:0042445,GO:0042461,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045444,GO:0045494,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0051179,GO:0051216,GO:0051219,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060170,GO:0060249,GO:0060271,GO:0060295,GO:0060296,GO:0060322,GO:0060632,GO:0061351,GO:0061448,GO:0061512,GO:0061951,GO:0065007,GO:0065008,GO:0070491,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097014,GO:0097458,GO:0098588,GO:0098590,GO:0098876,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902019,GO:1905515,GO:1990778,GO:2000145
Exons6
EggNOG free text desc.Bardet-biedl syndrome 1
EggNOG OGs2CMUT@1,2QS2X@2759
Cds size852
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19183.6128.1prot_Ecto-sp13_S_contig19183.6128.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19183 730..3348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.9692965-CDS-Ecto-sp13_S_contig19183:729..8821681462976.9692965-CDS-Ecto-sp13_S_contig19183:729..882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19183 730..882 -
1681462976.980226-CDS-Ecto-sp13_S_contig19183:1198..13361681462976.980226-CDS-Ecto-sp13_S_contig19183:1198..1336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19183 1199..1336 -
1681462976.9893513-CDS-Ecto-sp13_S_contig19183:1719..19291681462976.9893513-CDS-Ecto-sp13_S_contig19183:1719..1929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19183 1720..1929 -
1681462976.9992473-CDS-Ecto-sp13_S_contig19183:2164..22711681462976.9992473-CDS-Ecto-sp13_S_contig19183:2164..2271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19183 2165..2271 -
1681462977.0091863-CDS-Ecto-sp13_S_contig19183:2694..28581681462977.0091863-CDS-Ecto-sp13_S_contig19183:2694..2858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19183 2695..2858 -
1681462977.0192492-CDS-Ecto-sp13_S_contig19183:3268..33481681462977.0192492-CDS-Ecto-sp13_S_contig19183:3268..3348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19183 3269..3348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19183.6128.1

>prot_Ecto-sp13_S_contig19183.6128.1 ID=prot_Ecto-sp13_S_contig19183.6128.1|Name=mRNA_Ecto-sp13_S_contig19183.6128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=284bp
AYHLKGRRDFSLKMPALVVQLEAMETRSTTCLLVALADGNIRLYDAEKNL
LHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKT
FGAAPTGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLL
RLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQ
GDRALTNLPVAFTYDRDIYAMEKGQFTVSALIPGVSSRHEITITNIDEGG
AAGSVRILVLSPSGPSPLVSAVVSMPLSELIDS*
back to top

mRNA from alignment at Ecto-sp13_S_contig19183:730..3348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19183.6128.1 ID=mRNA_Ecto-sp13_S_contig19183.6128.1|Name=mRNA_Ecto-sp13_S_contig19183.6128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2619bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19183:730..3348- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTACCACCTCAAAGGGCGGAGGGATTTCTCTCTCAAGATGCCGGCCCT TGTGGTCCAGCTGGAAGCGATGGAGACCAGGTGTGGTGCTTCCAGCCAGG ACAAGTCCAAAAGTGAAAATTAGAACCATTCGGTCGACTAAACTCACTCA CGCACGACCAGTAGGCGGTCGCGGTGTTGATTGGGCTCTCGGTTTGCTGT TGGCTGTTTTGTGTCCACAATATAAGAAAGAAGATGTAAGCCAGGCGCAC ACCACGAAGAAGATGTGAGGTCGTTGTTGTGTTCGTCGTCGTCGTTGTTG TGTTCGTCGTCGTTGATGTTGTGTTCGTCGTCGTCGTTGTTGTGTTCGTC GTCGTCGTTGTTGTGTTCGTCGTCGTCGTTGTTGTGTTCGTTGTCGTCGT TGTTGTGTTCGTCGTCGTTGTCGCTGTTAATAGTGCTACCGCCGTCGTCT GAATGCTCAAGGATGACGCGACCCGAAACGTTCACAAAAGGTCGACCACG TGCCTCTTGGTAGCCCTGGCGGACGGCAACATTCGCCTGTACGATGCCGA GAAGAACCTGCTGCACACACTCAAGACGCAGGAGCCGATAGCGGCTCTGC GATTTGGACCCTACGCCAGAGAAGACGGCGCGCTCGCCGTCGTGTCCGTA ACAGGTTCGACAACAACAAGTAGGTACAATGTTCGCATGCTGTACGCGTG TGGTTGGGGTATTAGATTCCTCTTCATATTTTGCCGCCGTCGCTTCCCGG TGATGAGGTGGTTGGAGATAATGGGGAGAAACGTACTGGGTTTGTTTGCC CCATACATGCATCCGTGTTTGTTCGCGATGTCATCTGTTACAAGCGGTCA CCCCATGCACCATGCGAAGGAGAAGGCCAGCCTCGACAACAATCGCCTGG TTGGGATTGCTGTGGTGCTCCGTGCTATGTGTCGAACATCAACGACCTGA TCGTTGCCCCCTCAAACACTGACCCTTCATTGTTTTCGCGCTCACACAAA CTTGATTCCGGAAAGTCTTTCGCTTTCTCAATACCGTCTCTTCGTCGCGG TCACTCCCTGTTTGCCGGCATGCGCAGGGAAGTTGACCATATTTATGCTG AATCGCAAGGCTGATCTGAGGAAGCCCAAAACGTTCGGGGCAGCACCGAC TGGCTATCCGCCGGAACAGGACATCCCGCTCAAGGTTCTGAGTCCTTTTG TTGTCGCGCATGGCGTAGTGTCGTGAGCGGTGCTGCCGCGGAGAGCCGAC AATTTGGTGGGGTCTAGCACATGGTCTAGGCAATTGCTCCGTGGGAAAAG CTCTGTCTATCGTAAGCATGAAACCTACCGCAGAGGACCCAACCCACCAC CTTGATCACAGGGGCGCGTGGAACTTGACGACCCACCCAAACGCCGACGC GGCACAATAAAAAACACAGGTCCCGAAGAAGACCAAGCTGTACGTGGAGC AGACGCAGCGCGCGAAGCTTCAGGCCGGGGAGATCCACCGGGCGTTCCAG AAGGACCTCTGCCTCCTCAGGCTCACCGCCGCCCGGGCGTACGTCAAGAC CATCACGGACGGCCGGCAGGGAGTGAGCGCAGTCGGGGCGGCGGCATCGT TAAGGCTGCACGCGCAGTGCCAAGGGCTGGTGAGGGGACTGACTGGTAGC CGACGGTTCGGGCGTTTGAGCCACACGACGGGGGGAACGGCGTCAGCGGG CAGTTTAGGAGTGAATCCGGAACGTCTGCCGCTTGCTTGTGGAGAAAAAC GCTTAGACTATGGGGAAATTGTTACTTCAGTGTGCAGTGTCTCCGCTTGG ATGGCAAAGACAACAGGCCTTGCACAGCTGTTGGGAGCAGTTATGTTGGC TACACAAAGCGCGTGCACGATTTCTACACGTCTCTAAGGTAGAAGACATG GTGTTTTCCTGTGGCAGCCTGTGGTTGATGTGTTCCATCCTCGGAGCACA ACAAATTGGTACTGAAGTCGTCCCCCGCCCCCCCTGACCTTCTCACCCTG CTTTGCTTCAAGGGCCCGAATTTCAAGATAAAGCTGGAGCTTCAGAACCA GGGGGACCGAGCGCTTACAAACCTGCCCGTGGCGTTCACGTATGACCGAG ACATCTACGCTATGGAAAAGGGCCAGTTCACGGTGTCCGCGTTGATTCCG GTGAGCTTGCGCTTGAATGAGTGATCTTGCTCTGCTGTTCGACCCGCCCG TGCTTGTTGAACGGGGTACCACCCGTCGGTGTTGACTCGATTTAGGATCC GTTTGGGAGGAGTTTTCTTGCCAATCCTAGTTGTGGGCTATGGCGAGGCG CACCCCAAGGCCTCAGAAATAGAAACATGCTCAACGAATGTTTTCATTCC GTTGTTCGTTACGAATACACAGCGCGTCAATACCCAAATCCGATACAGGT TGGGGTCCCGGCTGGAAACAATTCTGAACTATTTGTATGCCCAACGCCTT TCCGCTGGCAACGCAGGGCGTCTCTTCCCGTCACGAGATCACCATCACCA ACATAGACGAAGGTGGGGCGGCGGGTTCCGTGAGAATACTGGTGCTCAGC CCTTCCGGGCCTTCGCCTTTGGTCTCGGCCGTTGTCAGCATGCCTCTCAG CGAGCTGATCGACTCCTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19183:730..3348-

>mRNA_Ecto-sp13_S_contig19183.6128.1 ID=mRNA_Ecto-sp13_S_contig19183.6128.1|Name=mRNA_Ecto-sp13_S_contig19183.6128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19183:730..3348- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTACCACCTCAAAGGGCGGAGGGATTTCTCTCTCAAGATGCCGGCCCT
TGTGGTCCAGCTGGAAGCGATGGAGACCAGGTCGACCACGTGCCTCTTGG
TAGCCCTGGCGGACGGCAACATTCGCCTGTACGATGCCGAGAAGAACCTG
CTGCACACACTCAAGACGCAGGAGCCGATAGCGGCTCTGCGATTTGGACC
CTACGCCAGAGAAGACGGCGCGCTCGCCGTCGTGTCCGTAACAGGGAAGT
TGACCATATTTATGCTGAATCGCAAGGCTGATCTGAGGAAGCCCAAAACG
TTCGGGGCAGCACCGACTGGCTATCCGCCGGAACAGGACATCCCGCTCAA
GGTCCCGAAGAAGACCAAGCTGTACGTGGAGCAGACGCAGCGCGCGAAGC
TTCAGGCCGGGGAGATCCACCGGGCGTTCCAGAAGGACCTCTGCCTCCTC
AGGCTCACCGCCGCCCGGGCGTACGTCAAGACCATCACGGACGGCCGGCA
GGGAGTGAGCGCAGTCGGGGCGGCGGCATCGTTAAGGCTGCACGCGCAGT
GCCAAGGGCTGGGCCCGAATTTCAAGATAAAGCTGGAGCTTCAGAACCAG
GGGGACCGAGCGCTTACAAACCTGCCCGTGGCGTTCACGTATGACCGAGA
CATCTACGCTATGGAAAAGGGCCAGTTCACGGTGTCCGCGTTGATTCCGG
GCGTCTCTTCCCGTCACGAGATCACCATCACCAACATAGACGAAGGTGGG
GCGGCGGGTTCCGTGAGAATACTGGTGCTCAGCCCTTCCGGGCCTTCGCC
TTTGGTCTCGGCCGTTGTCAGCATGCCTCTCAGCGAGCTGATCGACTCCT
AA
back to top