mRNA_Ecto-sp13_S_contig19181.6127.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19181.6127.1 vs. uniprot
Match: A0A6H5KP05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP05_9PHAE) HSP 1 Score: 852 bits (2202), Expect = 2.510e-274 Identity = 645/1252 (51.52%), Postives = 673/1252 (53.75%), Query Frame = 1
Query: 1 MDDRAKPDSDDTDGEEGNDDDKNALAKEEKSIEGDADAAEEATSGGDDGGSHNGTKPKTDMPGGVSIPQPETMAKAATSTSASDAGSGGGQWWGGRVSDTVAPVPEVSVGARASAEPDNGCATEEQDSEVDSAEEVVETDGADSSSVRGDVESFTWLKPAKGAPGDGSRTSRKDYARGDKPKWRNGSGRGDVGGSEAKKPESDAGSESSVTASTQGAEELVVPSASEEPAPKVEKATAAVDGTAAVDEAVTSPGMERTVEQGETEAAGVSLMDGAVDLSG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRGLGDGGTISVGRSSD--------------EGSSSSTADSARGKSSVDEMRSGSGAPGAGDNGQAGAVVAEDSPSEDSDDALTESDEANVEVGSSSEQLSGSPRDTAKEATAGEGVAESSSDKE-ATGSGMMPTTSGAGVETTFLEPADVRANPTADDTDGEEGDDYGKSSEESIQDNVNAADKPPSGNSGGGGSGSDNGAAESKAGTRGDFSTSQPESMAKAATDTSASDAGRGHGRWWGGRVSNAVAPASEVSVGERSSAEPDDGPATVEEDSQVDPAAGAAETDGADSSSVRDGVDSFPWGKSVKSAPDDRSRESRKEYARSSKPRWRKGSGRGGAGDSEAMNTEKSGSGLESSVTAGRHETKGLAVPSASEEPAPKVEKATVAVDDIAAVDETVASPGEERPGGQAETEAAGVSLMGGLVDISGEGGLSDVGSASVDGTSDGGTTAGPEADLKDDEGSSSLTADGAAGESSVDRLMTGSGAPGAVDDSLAEVVVGEDSPAEDSDDALTAGDEANVEVGSSSEQLASSPSDTAKEANAE 2424
M+D+AKPDSDD DGEEGNDD K+AL KEE I+GDA AAEEATSGGDD GSHNGTKPKTDM G V+IPQPE+ AKAAT TSASDAGSGGG+W GGRVSDTVAPVPEVSVGARASAEPD+G ATEEQDS+VDSAE V E GADSSSVRGDV+SF WL+P KGAPGDGSRTSRK YARG KPKWR GSGRGDVGG EAKK ES AGSESSVTA TQGAE LVVPSASEEP PK+E AT AVDGTAAVDEAV PG ERTV +GE EAAGVSLM GAVD+SG L GLGDGGTISVGRSSD + SSSS D A G+SSVDE SGSGAPGAGDNGQAGAVVAE SP ED LT DEANVEVGSSSEQL SPRDTAKE TA +GVAESSSDKE +T SG++ T SGAGVETT LE D RA PTADDTDGEEGDDYGKSSEESIQDNVNAADKP SGNSGGG SGSDNGAAESKAGTRG+ ST QPESMAKAATDTS SDAGRG GRWWGGRVSNAVAPASEVS E S+AE DDG ATVE+DSQVDPAAGAAETDGADSSSVRDGVDSFPWGK VKSAPDDRSR SRK+YARSSK WRKGSGRG GDSEAMNTEKSGSG ES VTA R ETKGLAVPS SEEPAPK+EKATV V+DIAAVDET+ASP EERPGGQAETEAAGVSLMGG SG GGLSDVGSASVDGTSDG TTAGPEAD+KDDEGSSSLTADGAAGESSV AGDEANVEVGSSSEQLASS DTAK AE
Sbjct: 800 MNDKAKPDSDDIDGEEGNDD-KSALVKEESIIKGDAYAAEEATSGGDDSGSHNGTKPKTDMRGEVAIPQPESTAKAATGTSASDAGSGGGRWRGGRVSDTVAPVPEVSVGARASAEPDDGRATEEQDSQVDSAESVAEIAGADSSSVRGDVDSFPWLQPGKGAPGDGSRTSRKVYARGGKPKWRYGSGRGDVGGFEAKKLESGAGSESSVTAGTQGAEGLVVPSASEEPPPKMETATVAVDGTAAVDEAVAFPGEERTVGKGEREAAGVSLMGGAVDISGVGGLGVGGAVSVDASSDGVTPANPGAKLGDDEGSSSATADGAAGDSALDGLMSGSGAPGAADDSLAEAVGTVESPGKDSDDYLTAGDEANVEVVCSSEQLPSNPGDTPNEAIVRDRVAEISSDKEAPGSGTMSVASGAGTETTSLEPEDSRAKPSANDTDSEEGDDDRKGAPAKEEEDITDDVDPADKVTSDTSGGYDSGGDKGAGSIADPQGNVSAPQLEWTTKTETDSSASEAGRGRRPLWRGSEVDVGEGASSEPYGGLPGEEQDGQVDLAQGVTEADEANSSSVRDGVDSVPWWKAAKSALGDGWRASRKDLSRSGKPRGRKGSGRGDVGVSAPTNVGSSEGKKTEERGGNFESSVTADTQGAEELVVLSASEEQLPKVEKDTAVDGTAAVNEAVASPEEERTGEQVATEAAGVSLVGGAADMSGLSGLGDGGTISVGRSSDGVTTAGPCPSLPNDQVSSSSITDGAGGESSVDETMSGSGAPGAGDNGQAGAVVAEGSPGED---VLTAGDEANVEVGSSSEQLPSSPRDTAKEGTAEDGVAESSSDKEDSTSSGLISTASGAGVETTSLEATDARAKPTADDTDGEEGDDYGKSSEESIQDNVNAADKPTSGNSGGGDSGSDNGAAESKAGTRGEVSTPQPESMAKAATDTSTSDAGRGGGRWWGGRVSNAVAPASEVSAAELSTAELDDGRATVEKDSQVDPAAGAAETDGADSSSVRDGVDSFPWGKPVKSAPDDRSRASRKQYARSSK--WRKGSGRGDVGDSEAMNTEKSGSGFESFVTADRQETKGLAVPSVSEEPAPKMEKATVEVNDIAAVDETMASPREERPGGQAETEAAGVSLMGG----SGVGGLSDVGSASVDGTSDGVTTAGPEADVKDDEGSSSLTADGAAGESSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEANVEVGSSSEQLASSSRDTAKGGTAE 2041
BLAST of mRNA_Ecto-sp13_S_contig19181.6127.1 vs. uniprot
Match: D8LBP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP6_ECTSI) HSP 1 Score: 802 bits (2071), Expect = 1.690e-255 Identity = 613/1252 (48.96%), Postives = 646/1252 (51.60%), Query Frame = 1
Query: 1 MDDRAKPDSDDTDGEEGNDDDKNALAKEEKSIEGDADAAEEATSGGDDGGSHNGTKPKTDMPGGVSIPQPETMAKAATSTSASDAGSGGGQWWGGRVSDTVAPVPEVSVGARASAEPDNGCATEEQDSEVDSAEEVVETDGADSSSVRGDVESFTWLKPAKGAPGDGSRTSRKDYARGDKPKWRNGSGRGDVGGSEAKKPE-SDAGSESSVTASTQGAEELVVPSASEEPAPKVEKATAAVDGTAAVDEAVTSPGMERTVEQGETEAAGVSLMDGAVDLSGLRGLGDGGTISVGRSSD--------------EGSSSSTADSARGKSSVDEMRSGSGAPGAGDNGQAGAVVAEDSPSEDSDDALTESDEANVEVGSSSEQLSGSPRDTAKEATAGEGVAESSSDKE-ATGSGMMPTTSGAGVETTFLEPADVRANPTADDTDGEEGDD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YGKSSEESIQDNVNAADKPPSGNSGGGGSGSDNGAAESKAGTRGDFSTSQPESMAKAATDTSASDAGRGHGRWWGGRVSNAVAPASEVSVGERSSAEPDDGPATVEEDSQVDPAAGAAETDGADSSSVRDGVDSFPWGKSVKSAPDDRSRESRKEYARSSKPRWRKGSGRGGAGDSEAMNTEKSGSGLESSVTAGRHETKGLAVPSASEEPAPKVEKATVAVDDIAAVDETVASPGEERPGGQAETEAAGVSLMGGLVDISGEGGLSDVGSASVDGTSDGGTTAGPEADLKDDEGSSSLTADGAAGESSVDRLMTGSGAPGAVDDSLAEVVVGEDSPAEDSDDALTAGDEANVEVGSSSEQLASSPSDTAKEANAE 2424
MDDRAKPD+DDT GEEGNDDDK+ALAKEEKSI+GDADAAEEAT GGDD GS NGTKPKTDM G VS PQPE+ AKAAT TSASDAG GGG+WWGGRVSDTVAP EV VGARASAEPD+G ATEEQDS+ DSAE ETDG VRGD +SF WLKPAKGAPGDG RTSRKDYARG KPKWR G GRGDVGGS+ +K E S GSESSV A TQGAEE VVPSASEEP PKVEKAT AVDGT AVDEAV SPG ERTV QGE EAA VSLM G VDLSG+ GLG GG +SV SD EGSSS+TA+ A G S+V+ + +GSGA D P +DSDD+LT DEANV V SSSEQL SP DT K A AGE VAESS DKE ATGSG+M SG ETT LEPAD RA P+A+DTD EEGDD YG SEES+QDNVNAADKP SGNSGGGGSGSDNGAAESKAG RG+ ST QPESMAKAATDTSASDAGRG RWWGGRVSNAV PASEV VGERSSAEPDDG T E+DSQVD A AE DGADSSSVRDGVDSFPWGK VK APDDRSR SRKEYARSSKP WRKGSGRG GDSEA NTEKSG GLESSVTA R E KGLA+PSASE+PAPKVEKATVAVDDIAAVDETVASPGE+RPGG ETEAAGVSLMGG+VDISG GGL DVGSASVDG+SDG T AGPE DLK DEGSSS TADGAAGESSVD +M+GSG DALTAGDEANVEVGSSSEQ ASSP DTAKEA AE
Sbjct: 1934 MDDRAKPDADDTGGEEGNDDDKSALAKEEKSIQGDADAAEEATIGGDDSGSDNGTKPKTDMRGEVSTPQPESTAKAATGTSASDAGRGGGRWWGGRVSDTVAPDSEVIVGARASAEPDDGRATEEQDSQGDSAEAAAETDG-----VRGDEDSFPWLKPAKGAPGDGLRTSRKDYARGGKPKWRKGGGRGDVGGSDTEKAEESGGGSESSVRARTQGAEE-VVPSASEEPLPKVEKATVAVDGTTAVDEAVASPGEERTVGQGEREAAAVSLMGGVVDLSGVGGLGVGGAVSVDADSDGVTPANPGAKLEDDEGSSSATANGAAGDSAVEGLMTGSGAXXXXXXXXXXXXXXVDPPGKDSDDSLTAGDEANVAVDSSSEQLPSSPGDTPKVAIAGERVAESSWDKEEATGSGIMSAASGGDAETTSLEPADARAKPSANDTDSEEGDDDRQRAPAKEEENITDDVDAADKVTSDTSGGDDSGSGKGAESIADTQGDVSAPQLESTTKAETDSSASEAGRGRRSLWHGSEVGVGERASAESDGGRPIEEQDGQVDLAPGAAEADEATSSSVRDGVDSVPWWKTAKSALGEGWRASRKDLPKSGKPRWRKGSGRGDVGGSASTNVGGSEGKKTEETDGGLESSVAADTQGVEELVVPSASEEPLSKLEKDTAVDGIAAVDEAVASPGEERTGGQVETEEAGVSLMGGAVDMSGLGGLDDGGAISVGRSSDGVTTAGPEANLKNGEGPXXXXXXXXXXESSVDEMMSGSGAPGAGDSGQAEAVVPEDSPAEDSDDALTAGDEANVEVGSSSEQLASSPRDIAKEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEGDDYGNGSEESVQDNVNAADKPTSGNSGGGGSGSDNGAAESKAGHRGEVSTPQPESMAKAATDTSASDAGRGGVRWWGGRVSNAVGPASEVIVGERSSAEPDDGRTTEEKDSQVDSAGEVAEKDGADSSSVRDGVDSFPWGKPVKGAPDDRSRASRKEYARSSKPTWRKGSGRGDVGDSEATNTEKSGGGLESSVTADRQEAKGLAIPSASEQPAPKVEKATVAVDDIAAVDETVASPGEDRPGGGVETEAAGVSLMGGVVDISGVGGLGDVGSASVDGSSDGVTPAGPEPDLKGDEGSSSSTADGAAGESSVDEMMSGSGXXXXXXXXXXXXXXXXXXXXXXXXDALTAGDEANVEVGSSSEQRASSPRDTAKEATAE 3179
BLAST of mRNA_Ecto-sp13_S_contig19181.6127.1 vs. uniprot
Match: A0A6H5KNP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP7_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 6.520e-10 Identity = 99/256 (38.67%), Postives = 112/256 (43.75%), Query Frame = 1
Query: 1822 SEAMNTEKSGSGLESSVTAGRHETKGLAVPSASEEPAPKVEKATV-----AVDDIAAVDETVASPGEERPGGQAETEAAGVSLMGGLVDISGEGGLSDVGSA-SVDGTSDGGT-------------------------------------------------TAGPEADLKDDEGSSSLTADGAAGESSVDRLMTGSGAPGAVDDSLAEVVVGEDSPAEDSDDALTAGDEANVEVGSSSEQLASSPSDTAKEANAE 2424
SEA S L S+ A GL VP +EE VE A A+D AA DE VA GE Q ETE AGVSLM GLV +S ++D G A +VD +GG +A E DL+ SSS+ ADGAAG SSVD SGAP DD AE VV ++ ED D L A DEA SSSEQLASSP D AKEA AE
Sbjct: 273 SEAAKEGGSSRDLGGSIAADTRGGGGLKVP--AEEHLRTVESAAAVSPSGAMDAAAAADEEVALAGEGTAKEQRETEVAGVSLMHGLVGVSAIAAVADGGKAGNVDAADEGGKRPLDEVPVATTDVSGEVEAFEYVDHEQSAAHANDDKGESSSTEGEIGSGSAAAEPDLEHAAASSSVVADGAAGGSSVDGSTDDSGAPCVEDDVSAETVVAVETKGEDPDYLLPAVDEAEA-TESSSEQLASSPGDVAKEAAAE 525 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19181.6127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19181.6127.1 >prot_Ecto-sp13_S_contig19181.6127.1 ID=prot_Ecto-sp13_S_contig19181.6127.1|Name=mRNA_Ecto-sp13_S_contig19181.6127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=808bp MDDRAKPDSDDTDGEEGNDDDKNALAKEEKSIEGDADAAEEATSGGDDGGback to top mRNA from alignment at Ecto-sp13_S_contig19181:274..3348+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19181.6127.1 ID=mRNA_Ecto-sp13_S_contig19181.6127.1|Name=mRNA_Ecto-sp13_S_contig19181.6127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3075bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19181:274..3348+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19181:274..3348+ >mRNA_Ecto-sp13_S_contig19181.6127.1 ID=mRNA_Ecto-sp13_S_contig19181.6127.1|Name=mRNA_Ecto-sp13_S_contig19181.6127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19181:274..3348+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |