mRNA_Ecto-sp13_S_contig19094.6080.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19094.6080.1
Unique NamemRNA_Ecto-sp13_S_contig19094.6080.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19094.6080.1 vs. uniprot
Match: D8LCU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.360e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   10 MEVDGMDEQQARQRLLEGGYFVALGVPPGVEFGIDLKSYK 129
            MEVDGMDEQQARQRLLEGGYFVALGVPPGVEFGIDLKSYK
Sbjct:    1 MEVDGMDEQQARQRLLEGGYFVALGVPPGVEFGIDLKSYK 40
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BLAST of mRNA_Ecto-sp13_S_contig19094.6080.1 vs. uniprot
Match: A0A6H5JER9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.050e-15
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   25 MDEQQARQRLLEGGYFVALGVPPGVEFGIDLKSYK 129
            MDEQQARQRLLEGGYFVALGVPPGVEFGIDLKSYK
Sbjct:    1 MDEQQARQRLLEGGYFVALGVPPGVEFGIDLKSYK 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19094.6080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCU7_ECTSI3.360e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JER9_9PHAE9.050e-15100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19094contigEcto-sp13_S_contig19094:252..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score85.5
Seed ortholog evalue7.4e-15
Seed eggNOG ortholog2880.D8LCU7
Model size153
KEGG koko:K00411,ko:K03260,ko:K13205
KEGG Pathwayko00190,ko01100,ko02020,ko03013,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05416,map00190,map01100,map02020,map03013,map04260,map04714,map04932,map05010,map05012,map05016,map05416
KEGG ModuleM00151,M00152,M00428
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1990904
Exons1
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsKOG3937@1,KOG3937@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006950.2
EC1.10.2.2
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462973.2160854-UTR-Ecto-sp13_S_contig19094:251..2601681462973.2160854-UTR-Ecto-sp13_S_contig19094:251..260Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19094 252..260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462973.2369416-CDS-Ecto-sp13_S_contig19094:260..4041681462973.2369416-CDS-Ecto-sp13_S_contig19094:260..404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19094 261..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19094.6080.1prot_Ecto-sp13_S_contig19094.6080.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19094 261..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19094.6080.1

>prot_Ecto-sp13_S_contig19094.6080.1 ID=prot_Ecto-sp13_S_contig19094.6080.1|Name=mRNA_Ecto-sp13_S_contig19094.6080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MEVDGMDEQQARQRLLEGGYFVALGVPPGVEFGIDLKSYKVCEVGGG*
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mRNA from alignment at Ecto-sp13_S_contig19094:252..404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19094.6080.1 ID=mRNA_Ecto-sp13_S_contig19094.6080.1|Name=mRNA_Ecto-sp13_S_contig19094.6080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19094:252..404+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTTGACCATGGAAGTTGACGGCATGGATGAGCAGCAAGCACGACAAAG
GCTGCTGGAAGGGGGGTACTTCGTAGCTCTGGGAGTGCCGCCCGGGGTGG
AGTTCGGAATCGATCTCAAGAGCTACAAGGTTTGTGAGGTTGGAGGTGGT
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19094:252..404+

>mRNA_Ecto-sp13_S_contig19094.6080.1 ID=mRNA_Ecto-sp13_S_contig19094.6080.1|Name=mRNA_Ecto-sp13_S_contig19094.6080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19094:252..404+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGTTGACGGCATGGATGAGCAGCAAGCACGACAAAGGCTGCTGGA
AGGGGGGTACTTCGTAGCTCTGGGAGTGCCGCCCGGGGTGGAGTTCGGAA
TCGATCTCAAGAGCTACAAGGTTTGTGAGGTTGGAGGTGGTTGA
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