mRNA_Ecto-sp13_S_contig1907.6071.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1907.6071.1
Unique NamemRNA_Ecto-sp13_S_contig1907.6071.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1907.6071.1 vs. uniprot
Match: D7G2M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 6.270e-38
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 MSSSLADASLLGSTQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVREK 204
            MSSSLADASLLGSTQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELV  K
Sbjct:    1 MSSSLADASLLGSTQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVARK 68
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BLAST of mRNA_Ecto-sp13_S_contig1907.6071.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.430e-32
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 MSSSLADASLLGSTQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVREK 204
            MSSSLADAS LGSTQNGDA+GSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELV  K
Sbjct:    1 MSSSLADASFLGSTQNGDAIGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVAVK 68
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BLAST of mRNA_Ecto-sp13_S_contig1907.6071.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.350e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   82 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVREK 204
            +F +SDFYLNMDDV +G QIGQGAFSKVY+G+Y GELV  K
Sbjct:   31 AFEESDFYLNMDDVLLGAQIGQGAFSKVYVGKYLGELVAVK 71
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BLAST of mRNA_Ecto-sp13_S_contig1907.6071.1 vs. uniprot
Match: A0A7S2SRX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRX7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.670e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   82 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVREK 204
            SF DSD+ L++ DV+IGP +G+G FSKVY+GRYFGE+V  K
Sbjct:   10 SFEDSDYSLDLSDVEIGPLLGEGMFSKVYVGRYFGEVVAVK 50
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BLAST of mRNA_Ecto-sp13_S_contig1907.6071.1 vs. uniprot
Match: A0A835YUS4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUS4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.740e-9
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   40 TQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVREK 204
            T   D+   G+    F DSDFY+N D V +GP IG+GAFS VY GRYFG+ V  K
Sbjct:   75 TSQQDSFREGNKLPDFADSDFYVNPDSVTLGPSIGEGAFSTVYAGRYFGDTVAVK 129
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BLAST of mRNA_Ecto-sp13_S_contig1907.6071.1 vs. uniprot
Match: A0A836CNH5_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.030e-8
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   82 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVREK 204
            +F+++D YL++ D+ +G QIGQGAFSKVY+GRY GELV  K
Sbjct:    5 AFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVK 45
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BLAST of mRNA_Ecto-sp13_S_contig1907.6071.1 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.010e-7
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   85 FNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVREK 204
            F +SDFY+  + V IGP +G+GAFS VY+G+YFG++V  K
Sbjct:   12 FEESDFYVEQEQVTIGPAVGEGAFSTVYIGKYFGDVVAVK 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1907.6071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G2M6_ECTSI6.270e-3897.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRN5_9PHAE6.430e-3294.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZKA0_9STRA4.350e-1173.17LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A7S2SRX7_9STRA1.670e-963.41Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835YUS4_9STRA4.740e-952.73Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CNH5_9STRA2.030e-860.98Kinase-like domain-containing protein (Fragment) n... [more]
D7G911_ECTSI2.010e-755.00LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1907contigEcto-sp13_S_contig1907:12694..12897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-11_002790.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462972.548323-CDS-Ecto-sp13_S_contig1907:12693..128971681462972.548323-CDS-Ecto-sp13_S_contig1907:12693..12897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1907 12694..12897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1907.6071.1prot_Ecto-sp13_S_contig1907.6071.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1907 12694..12897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1907.6071.1

>prot_Ecto-sp13_S_contig1907.6071.1 ID=prot_Ecto-sp13_S_contig1907.6071.1|Name=mRNA_Ecto-sp13_S_contig1907.6071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MSSSLADASLLGSTQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQG
AFSKVYLGRYFGELVREK
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mRNA from alignment at Ecto-sp13_S_contig1907:12694..12897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1907.6071.1 ID=mRNA_Ecto-sp13_S_contig1907.6071.1|Name=mRNA_Ecto-sp13_S_contig1907.6071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1907:12694..12897+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGCTCTCTGGCCGATGCGTCCTTGCTGGGAAGTACGCAGAACGG
CGACGCCATGGGCTCGGGAGACAACGCGCTCAGCTTCAATGACAGCGACT
TTTACCTGAACATGGACGATGTCGACATCGGTCCCCAGATTGGGCAGGGA
GCCTTTTCCAAGGTCTACTTGGGACGTTACTTCGGGGAGCTGGTGAGAGA
GAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1907:12694..12897+

>mRNA_Ecto-sp13_S_contig1907.6071.1 ID=mRNA_Ecto-sp13_S_contig1907.6071.1|Name=mRNA_Ecto-sp13_S_contig1907.6071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1907:12694..12897+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGCTCTCTGGCCGATGCGTCCTTGCTGGGAAGTACGCAGAACGG
CGACGCCATGGGCTCGGGAGACAACGCGCTCAGCTTCAATGACAGCGACT
TTTACCTGAACATGGACGATGTCGACATCGGTCCCCAGATTGGGCAGGGA
GCCTTTTCCAAGGTCTACTTGGGACGTTACTTCGGGGAGCTGGTGAGAGA
GAAA
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