mRNA_Ecto-sp13_S_contig1906.6065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1906.6065.1
Unique NamemRNA_Ecto-sp13_S_contig1906.6065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1906.6065.1 vs. uniprot
Match: D7G3H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H8_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 9.430e-102
Identity = 194/234 (82.91%), Postives = 199/234 (85.04%), Query Frame = 1 
Query:    1 VVTRDLRFAECHDSRSEESRPSVVVAVHSDVQGFDFLAQPPDPELLEAAVALPILRWGYPSPRYPDLASPPRVEHSRALAPIASESNKSNATTTAKMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KSGLLLYVRPGPKGAENAVTFLVQSPIHFFSVRARLDCAGSVNASPMPGSIELSREVTLVPGQSKVIQHLVPTDPRTSWSWKHAPLTVDTL 699
            VV RDLRFAECHD+RSEE+RPSVVVAVHSDVQGFDFLAQPPDPELLEAAVALPI RWGYPSP YPDLASPP VEHSRALA IAS SNK+ ATTTA+ME                        XXXXXXXXXXXXXXXXXXXX KSGLLLYVRPGPKGAENAVTFLVQSPIHFFSVRARLDC GSVNASPMPGSI LSREVTL+PGQSKVIQHLVPTDPRT WSWKHAPLTVDTL
Sbjct:  935 VVMRDLRFAECHDARSEENRPSVVVAVHSDVQGFDFLAQPPDPELLEAAVALPIQRWGYPSPGYPDLASPPPVEHSRALATIASGSNKTGATTTAEMETATTASVTGHEITATFNNASRTDDXXXXXXXXXXXXXXXXXXXXXKSGLLLYVRPGPKGAENAVTFLVQSPIHFFSVRARLDCTGSVNASPMPGSIGLSREVTLLPGQSKVIQHLVPTDPRTPWSWKHAPLTVDTL 1168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1906.6065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3H8_ECTSI9.430e-10282.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1906contigEcto-sp13_S_contig1906:7775..9607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score330.5
Seed ortholog evalue6.4e-88
Seed eggNOG ortholog2880.D7G3H8
Model size703
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size702
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462972.0411386-CDS-Ecto-sp13_S_contig1906:7774..78911681462972.0411386-CDS-Ecto-sp13_S_contig1906:7774..7891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1906 7775..7891 +
1681462972.0527785-CDS-Ecto-sp13_S_contig1906:8479..89561681462972.0527785-CDS-Ecto-sp13_S_contig1906:8479..8956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1906 8480..8956 +
1681462972.0619817-CDS-Ecto-sp13_S_contig1906:9499..96071681462972.0619817-CDS-Ecto-sp13_S_contig1906:9499..9607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1906 9500..9607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1906.6065.1prot_Ecto-sp13_S_contig1906.6065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1906 7775..9607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1906.6065.1

>prot_Ecto-sp13_S_contig1906.6065.1 ID=prot_Ecto-sp13_S_contig1906.6065.1|Name=mRNA_Ecto-sp13_S_contig1906.6065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
VVTRDLRFAECHDSRSEESRPSVVVAVHSDVQGFDFLAQPPDPELLEAAV
ALPILRWGYPSPRYPDLASPPRVEHSRALAPIASESNKSNATTTAKMENS
TAAAAPGREITTTFNNASRTEDDNGNESNEASVVNDDAANNNKSGLLLYV
RPGPKGAENAVTFLVQSPIHFFSVRARLDCAGSVNASPMPGSIELSREVT
LVPGQSKVIQHLVPTDPRTSWSWKHAPLTVDTL*
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mRNA from alignment at Ecto-sp13_S_contig1906:7775..9607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1906.6065.1 ID=mRNA_Ecto-sp13_S_contig1906.6065.1|Name=mRNA_Ecto-sp13_S_contig1906.6065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1833bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1906:7775..9607+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTTACGCGAGACCTTCGCTTCGCGGAGTGTCATGATTCACGTTCGGA
AGAGAGTCGCCCCTCGGTCGTGGTTGCCGTGCATTCCGACGTCCAGGGTT
TCGATTTTCTGGCGCAGGTAAAGAAGATCACATTGAATAGTCCCCGCGAC
GAGCGAGCGCAGCGGTGTGTGCGGTATTGTCGATGCGGTTTCCGCTCGTC
CTCAGGATAAAACGCCCGAGCTCGTGACCTTGTACGGAAACATCTGCAAC
TCGGTGTTCACTTCGAACGAAGCAAGTTTTGGCAGAGTTGACAGGGTGGA
TCGACTTAAGAAACTGGAGAAGGAAGTTCGGATGTTTCTTTTTCGTAGTC
GAGTTGAACCTCAGGCGACCATGTACTCGGATTCTTGACGAAGCTGTGCA
CTCGCAAGTGGTAACGTGAAGCTGAATACATACCCGTCGTTACACGTATT
GCTCCTCCGGTACAGTGATGACACGGAATTAGTGTTGAATCGTATTTTGA
AAAGGCGCGACGCCAATTAAAGGGCGATCGACGTCTAACTGACTCACCGA
CGAAAGGACTGCTCAAGAGAACCACGACCACGAACCGACCCGAATCGACC
TACTCAGCCTTACCCAACGCAGGTCATTCTCCCCCGCTTTAATCAATACC
CACCGACGTGCTTCTCGACCTGTCGGTCTCCGAAAAACTGCTATTCGTGT
CGCAGCCACCAGATCCTGAGCTTCTGGAGGCAGCCGTTGCCCTCCCAATC
TTACGCTGGGGCTATCCTTCGCCTCGCTACCCCGATCTCGCAAGCCCACC
GCGGGTGGAGCATAGCAGAGCGTTGGCCCCCATTGCTTCAGAATCGAACA
AGTCCAACGCAACAACAACGGCCAAAATGGAGAATTCAACGGCGGCCGCA
GCGCCGGGACGCGAAATCACCACCACCTTCAACAATGCAAGTAGAACAGA
GGATGACAACGGAAACGAAAGCAACGAAGCAAGCGTCGTCAACGATGACG
CTGCCAACAACAACAAGAGTGGGCTGCTGCTGTACGTGAGGCCCGGGCCA
AAGGGGGCCGAAAACGCCGTCACGTTTTTGGTGCAGAGCCCGATCCACTT
CTTCAGCGTTAGGGCTCGTCTCGACTGCGCCGGGAGCGTCAACGCGTCTC
CCATGCCCGGCTCCATCGAGCTTTCCAGGGAGGTGAGGCTTGGATGTACG
GATATAGACTACGGTAGGTGTTCCACACACACACCGGGGAAAACCGACTT
TGGAAAACAAGTGTGTGAATGGTGAAACAGGGATAGATAGATGGGAGCCT
GTTGCAGAGTTGCCACCCTGAGATATGTCCAGTTTGCACGGAGAGGTTAA
GGCCACGGGTGGTGCGGACATAAACGAGGTTACCGGGTCGGTTGTTGCCC
TCCTCTGACCAGTCAACCTGTTGCCACGCAGGCACAATTATGAGCGAACA
CGCGGAATATTGAAGAGTCGCCTATCGAGGGAACTTAGTGTACTGTGTGG
CAAGTTGAAAATCTGTCTCCCTGGCGAAAGCGAGAAGAAACACACGCCAC
CCAGAAGGTATCGACCCATGCAAATCACCCGCCCTTGGGTACTGTAGGAA
CGATAATAAAGGACACGGCAGACACCGTCAGACGTTTGCGTAACCCATCC
TCTCCTCATGCTCGCGTGTATCTTCGTTTTGTCTGTCGAATCTTTTCTTG
CCTGGGCCGGTTGGCCTCCCCACAGGTGACGCTAGTCCCGGGGCAGTCTA
AAGTCATCCAGCATCTCGTGCCCACAGACCCCCGTACGTCGTGGTCTTGG
AAACACGCACCGTTGACCGTGGACACCCTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1906:7775..9607+

>mRNA_Ecto-sp13_S_contig1906.6065.1 ID=mRNA_Ecto-sp13_S_contig1906.6065.1|Name=mRNA_Ecto-sp13_S_contig1906.6065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1906:7775..9607+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTTACGCGAGACCTTCGCTTCGCGGAGTGTCATGATTCACGTTCGGA
AGAGAGTCGCCCCTCGGTCGTGGTTGCCGTGCATTCCGACGTCCAGGGTT
TCGATTTTCTGGCGCAGCCACCAGATCCTGAGCTTCTGGAGGCAGCCGTT
GCCCTCCCAATCTTACGCTGGGGCTATCCTTCGCCTCGCTACCCCGATCT
CGCAAGCCCACCGCGGGTGGAGCATAGCAGAGCGTTGGCCCCCATTGCTT
CAGAATCGAACAAGTCCAACGCAACAACAACGGCCAAAATGGAGAATTCA
ACGGCGGCCGCAGCGCCGGGACGCGAAATCACCACCACCTTCAACAATGC
AAGTAGAACAGAGGATGACAACGGAAACGAAAGCAACGAAGCAAGCGTCG
TCAACGATGACGCTGCCAACAACAACAAGAGTGGGCTGCTGCTGTACGTG
AGGCCCGGGCCAAAGGGGGCCGAAAACGCCGTCACGTTTTTGGTGCAGAG
CCCGATCCACTTCTTCAGCGTTAGGGCTCGTCTCGACTGCGCCGGGAGCG
TCAACGCGTCTCCCATGCCCGGCTCCATCGAGCTTTCCAGGGAGGTGACG
CTAGTCCCGGGGCAGTCTAAAGTCATCCAGCATCTCGTGCCCACAGACCC
CCGTACGTCGTGGTCTTGGAAACACGCACCGTTGACCGTGGACACCCTCT
AG
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