mRNA_Ecto-sp13_S_contig1905.6057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1905.6057.1
Unique NamemRNA_Ecto-sp13_S_contig1905.6057.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1905.6057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1905contigEcto-sp13_S_contig1905:9805..10335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size409
Hectar predicted targeting categorymitochondrion
Exons2
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.4348516-UTR-Ecto-sp13_S_contig1905:9804..99911681462971.4348516-UTR-Ecto-sp13_S_contig1905:9804..9991Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1905 9805..9991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.4436674-CDS-Ecto-sp13_S_contig1905:9991..100471681462971.4436674-CDS-Ecto-sp13_S_contig1905:9991..10047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1905 9992..10047 +
1681462971.4518497-CDS-Ecto-sp13_S_contig1905:10169..103351681462971.4518497-CDS-Ecto-sp13_S_contig1905:10169..10335Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1905 10170..10335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1905.6057.1prot_Ecto-sp13_S_contig1905.6057.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1905 9992..10335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1905.6057.1

>prot_Ecto-sp13_S_contig1905.6057.1 ID=prot_Ecto-sp13_S_contig1905.6057.1|Name=mRNA_Ecto-sp13_S_contig1905.6057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MMSRTDARVGRHAVKIHRSVSQGVAMISVPNRLGGMLLQRWWHRVTVWRS
LHHVFKSTVVSAVALCFALQCGST
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mRNA from alignment at Ecto-sp13_S_contig1905:9805..10335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1905.6057.1 ID=mRNA_Ecto-sp13_S_contig1905.6057.1|Name=mRNA_Ecto-sp13_S_contig1905.6057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1905:9805..10335+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAACCCCGAAGATTCAAAGAGGTGGGTGCGTGGATTCGGACGAAGGTC
TGACCATTGTTGCTTTGGCCACGGTCCGGGATTATGTATCAAGATGTGTG
CGTGGGACGGTGGCGTGACCAGGTGACAGCGGGGTCTGCGGAACATGGTA
GTATGACGAGGTGGCCTGAGCGCGTCATGGGTGCGTGATGATGTCAAGAA
CAGATGCAAGGGTAGGGAGACATGCAGTGAAAATACACCGGAGGATCAAC
ATGACCATGAAAGTGTTGTCAGGGGTGACCCTCTAGTCGACCCAAACAAC
AAGAATTACCATCGCCAAGAGCATGCGGTAACAGGTTAAGATTCGCTCGA
GCACGAGACCGCTCCTGTTTCGCAGGGTGTAGCAATGATCAGCGTGCCTA
ATCGCTTGGGGGGCATGCTCCTTCAGAGATGGTGGCATAGAGTCACGGTC
TGGAGGTCTCTGCATCACGTATTCAAAAGCACGGTGGTGTCTGCTGTTGC
CCTGTGCTTTGCTCTACAATGTGGCTCTACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1905:9805..10335+

>mRNA_Ecto-sp13_S_contig1905.6057.1 ID=mRNA_Ecto-sp13_S_contig1905.6057.1|Name=mRNA_Ecto-sp13_S_contig1905.6057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1905:9805..10335+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTCAAGAACAGATGCAAGGGTAGGGAGACATGCAGTGAAAATACA
CCGGAGTGTTTCGCAGGGTGTAGCAATGATCAGCGTGCCTAATCGCTTGG
GGGGCATGCTCCTTCAGAGATGGTGGCATAGAGTCACGGTCTGGAGGTCT
CTGCATCACGTATTCAAAAGCACGGTGGTGTCTGCTGTTGCCCTGTGCTT
TGCTCTACAATGTGGCTCTACG
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