mRNA_Ecto-sp13_S_contig19040.6052.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19040.6052.1
Unique NamemRNA_Ecto-sp13_S_contig19040.6052.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19040.6052.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.490e-32
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 2 
Query:    2 NSTQHPPATPAGSLVTGVIKSPSNHLAWVGKIAPQGGVSVPLEYTLEWPFEKEIDMSFNY 181
            NSTQHPPATPAGSLVTGVIK+PSNHLAWVGKIAP+GGVSVPLEYTLEWPFEKEIDMSFNY
Sbjct:  545 NSTQHPPATPAGSLVTGVIKNPSNHLAWVGKIAPRGGVSVPLEYTLEWPFEKEIDMSFNY 604
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BLAST of mRNA_Ecto-sp13_S_contig19040.6052.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.490e-26
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:    2 NSTQHPPATPAGSLVTGVIKSPSNHLAWVGKIAPQGGVSVPLEYTLEWPFEKEIDMSF 175
            N+TQ PPATPAGSLVTGV+KSPSNHLAWVGKIAPQGGVS+PL+YT+EWPFEKEI+  F
Sbjct:  588 NNTQRPPATPAGSLVTGVMKSPSNHLAWVGKIAPQGGVSIPLKYTVEWPFEKEIETLF 645
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BLAST of mRNA_Ecto-sp13_S_contig19040.6052.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.600e-25
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 2 
Query:    2 NSTQHPPATPAGSLVTGVIKSPSNHLAWVGKIAPQGGVSVPLEYTLEWPFEKEIDMSF 175
            NST+ PPATPA SLVTGV KSPSNHLAWVGKIAPQGGVSVPL YT+EWPFEKEI+M F
Sbjct:  577 NSTRRPPATPAESLVTGVFKSPSNHLAWVGKIAPQGGVSVPLTYTVEWPFEKEIEMLF 634
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BLAST of mRNA_Ecto-sp13_S_contig19040.6052.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 9.640e-15
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:    2 NSTQHPPATPAGSLVTGVIKSPSNHLAWVGKIAPQGGVSVPLEYTLEWPFEKEIDMS 172
            ++ Q PPA      V GVIKSPSNHLAWVGKIAPQG +SVPLEYT+EWP  K+I+ S
Sbjct:  618 SNVQMPPAVHG---VLGVIKSPSNHLAWVGKIAPQGEISVPLEYTVEWPTGKQIEFS 671
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BLAST of mRNA_Ecto-sp13_S_contig19040.6052.1 vs. uniprot
Match: D8LRM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM9_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.330e-10
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:   44 VTGVIKSPSNHLAWVGKIAPQGGVSVPLEYTLEWPFEKEI 163
            + G+ K P+NHLAWV K+APQ  +S+PLEYT+EWP  KE+
Sbjct:  727 IAGITKGPTNHLAWVLKVAPQDDISIPLEYTVEWPIGKEV 766
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19040.6052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRN6_ECTSI4.490e-3296.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN7_ECTSI5.490e-2684.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN8_ECTSI2.600e-2586.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN5_ECTSI9.640e-1566.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRM9_ECTSI7.330e-1060.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19040contigEcto-sp13_S_contig19040:1477..2061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size233
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.3161309-CDS-Ecto-sp13_S_contig19040:1478..16301681462971.3161309-CDS-Ecto-sp13_S_contig19040:1478..1630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19040 1479..1630 -
1681462971.3265908-CDS-Ecto-sp13_S_contig19040:1982..20611681462971.3265908-CDS-Ecto-sp13_S_contig19040:1982..2061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19040 1983..2061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19040.6052.1prot_Ecto-sp13_S_contig19040.6052.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19040 1479..2061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19040.6052.1

>prot_Ecto-sp13_S_contig19040.6052.1 ID=prot_Ecto-sp13_S_contig19040.6052.1|Name=mRNA_Ecto-sp13_S_contig19040.6052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
QQHSAPAGDSRRKPRNGCNQESIESPGLGGKDRSSGRCFSPSRVHLGVAF
REGDRHVVQLLADTGGRATSMGNDDRN
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mRNA from alignment at Ecto-sp13_S_contig19040:1477..2061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19040.6052.1 ID=mRNA_Ecto-sp13_S_contig19040.6052.1|Name=mRNA_Ecto-sp13_S_contig19040.6052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19040:1477..2061- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAGCACTCAGCACCCGCCGGCGACTCCCGCCGGAAGCCTCGTAACGG
GTGTAATCAAGAGTCCATCGAATCACCTGGTGAGGTGATATTTGTTTACA
CCAAGGGTACTCACGCGACGTTTCACGAGAAGCAATGAGCCGTTTTACGT
CTGCCTTGGAGACGAAGACTGTTAAGCAACACAAATCTCATATGACAAGC
GCAGCTGGCACGACAATGTTGCTATGATGACACGGCGTGATGACCCCCCT
CGACGTCTCCATCTGCGTACCGCTGCCTCGAAGGGGATGTGACGCTCTTA
CCGCCCTCTCAATTTGCGGCCCCTCCGCCGCCCCCGCCCCTACCCCTCCT
CTTACGGTTTAGTTATTGTCGCAAACGAATATGAAGATTAAGGCACACTT
TTTCCGTTCACAAACAACTGGATTTTGGCAGGCTTGGGTGGGAAAGATCG
CTCCTCAGGGAGGTGTTTCAGTCCCTCTCGAGTACACCTTGGAGTGGCCT
TTCGAGAAGGAGATCGACATGTCGTTCAATTACTAGCTGACACGGGTGGA
CGAGCAACGTCAATGGGAAACGACGATCGGAATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19040:1477..2061-

>mRNA_Ecto-sp13_S_contig19040.6052.1 ID=mRNA_Ecto-sp13_S_contig19040.6052.1|Name=mRNA_Ecto-sp13_S_contig19040.6052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19040:1477..2061- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAGCACTCAGCACCCGCCGGCGACTCCCGCCGGAAGCCTCGTAACGG
GTGTAATCAAGAGTCCATCGAATCACCTGGCTTGGGTGGGAAAGATCGCT
CCTCAGGGAGGTGTTTCAGTCCCTCTCGAGTACACCTTGGAGTGGCCTTT
CGAGAAGGAGATCGACATGTCGTTCAATTACTAGCTGACACGGGTGGACG
AGCAACGTCAATGGGAAACGACGATCGGAAT
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