mRNA_Ecto-sp13_S_contig19.6028.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19.6028.1
Unique NamemRNA_Ecto-sp13_S_contig19.6028.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19.6028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19contigEcto-sp13_S_contig19:32898..35705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size315
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.2844458-UTR-Ecto-sp13_S_contig19:32897..329151681462969.2844458-UTR-Ecto-sp13_S_contig19:32897..32915Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19 32898..32915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.2941616-CDS-Ecto-sp13_S_contig19:32915..329241681462969.2941616-CDS-Ecto-sp13_S_contig19:32915..32924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 32916..32924 +
1681462969.304332-CDS-Ecto-sp13_S_contig19:33553..336201681462969.304332-CDS-Ecto-sp13_S_contig19:33553..33620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 33554..33620 +
1681462969.3149004-CDS-Ecto-sp13_S_contig19:35484..357051681462969.3149004-CDS-Ecto-sp13_S_contig19:35484..35705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 35485..35705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19.6028.1prot_Ecto-sp13_S_contig19.6028.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19 32916..35705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19.6028.1

>prot_Ecto-sp13_S_contig19.6028.1 ID=prot_Ecto-sp13_S_contig19.6028.1|Name=mRNA_Ecto-sp13_S_contig19.6028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MIEPDGVFCAPGRCKYDRKATCRCSANARVKAGLEDARRMERKSRRQREE
LPGDWGADKGQGTRGGQEQAKRGGDVPFSHKHPTRAETVSKRMVSAVC*
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mRNA from alignment at Ecto-sp13_S_contig19:32898..35705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19.6028.1 ID=mRNA_Ecto-sp13_S_contig19.6028.1|Name=mRNA_Ecto-sp13_S_contig19.6028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2808bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19:32898..35705+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGGCTTCCAGCGTTGATGATTGAGGTCAGAGACGTTGCTCCCTGTTT
GTCGTTGTGCCGCGCGCATATCGGGCTGCTAACTATGCCGTCATTGTCAC
ATATTACCTGCGGGCCCGGAGGTTTGGCTCGACCGCAGGCATATTAATAT
GTTCGACTATGTTTTGTAGCCCGTAGATGAGGAACTGCCAAACACCAGTC
AAACACATCCACATGCCTGCCGTCGAGGCACAACTCCGAGCCAACCGGGA
GCGTGTGATAACGACGGCATTATTAGCTTAATACGCATGCGACACGGCGA
TAGACAAGCTTGTGCATCTCTATCCCCAGCCATCAGCCCAGGAGTCCGGT
GCCATTGTGTCCGGTGTGGTGCAGGTTTTTGTTCCCGTGCTGGCGCGGGC
GCCGGTGCAGGTGCTGGTGCTGGTGCTCTTGCCGTCGTCTCACCTTGCTC
GAGTTCGGAGAATTGGATTTGTTCTAATATGTTTGTGATGTAGGCGCAAG
TATATGCAGCTTGCCAATCAAACGCCGTGGCGGGCAAAACAGGAAATGAG
AAAGGAGTCGCCGAGGAGTCTTCTCCTGCAGAGTAAACTACTGTCATAGC
ATAGACTACAGCTTTCCGGCCCTTGTTTGTGTCTCGTCCATTGCACCCGC
GACCAGCCGGACGGGGTCTTCTGTGCGCCCGGGCGCTGTAAATACGATCG
GAAGGCAACGTGTCGCTGCTCAGGTTTGGACGAGAGAGCAGAAACTGTAG
ATGCCACACTGCACCTAGGCACACTTTGAAGGTTTCTGCATAAGAACCGC
GAGCTAGCATTTGAATACGCCTGCTATTCATGCTACTCCGTGGCACCCGT
ACACGGGTACAAGCGGTTGGAAGGATCCGAGCTGTACCGGTTTGAGTCCC
CTTGGTCAACTTGTCTCTCGTCCTCGGCAAGAAGATCGTGTAGGGTATCT
TTCGTCGCTTCTCTTGTCCCTGGTAAGGTAGAGAACATGGTCCTGATATG
TATTCGGGCGCAAGGAGCTATGATAAGGCCGACACGAGGAGGTCGACGAA
TTTGCGTCGGAAAACGTTGTCGATGGGCTGTTGGTTTCGTTCTGTCTTGG
CACACCACGCCTTCGCGCTTTTCATCCAGACGGGCGGTTGCTACTTACTT
TTACTGTCTCTCCTGAACGAGAATCGGAATGGTTACTTCCGCATGTTATC
GTCTGTTGTGGTCTACCACTGTACCGTACGGACTCAAAACACCCCAAGTC
GACGGGCGGCAACATCCAGCGCGTCTCGGATAAGGGCATTCGATGGCCTT
TCGTCGGGCGGCTAACTCGTAGGATCACATAAAGCACCCAGTGCCAAGTC
ATTCTGGCAATTTATCACCTTTTATACACACAGATTCATCGCAACAGACC
CAATGAGAGCATTCGCGACCTTCAAGCAAGCGGGTTGACTGCGCTTAGGT
AGAAGGAGAGGGAAGGAGGCGGGTAGGAAAGTAAGTCTTTTTTAGAAGCG
ATGAGTCCGTATATCGCTTGTCGGTGCGGAAGGAGGAGCACGAAGTCGAC
CCGAAGCGCCACCACCGCCACTTCTGCTATCAATGTGTGTTCGCTTCCCT
CTCGTCATCATACTTACGGCAGAGAGCGATTGTCGCTCTAACGTCTACAC
ATCTCATTTTCTTAACTGTTCCCAGAAGGGGGAGTTTCAGAGGGTGTGCT
GCATGGAAATGAATCGTCAGGTTCCACACGAGTGCAAACAGTTGGTCGAG
AGGCATTACTAGCAATCTCGAAAGCATCCGACTCTGTGGTGCTGCCGCGA
AGGTGCACTTGCTACAATACAAACTTCAGAATTCAAGGTGAATGTCGGGT
CCAGGCTGCATTTCACGTTTTATCGCCACAGCTGTCGAGAACAGGTCGGG
CTCGCGGGTTTAGTGCAGATTCCGCCGTTGAGCTAGCTGGGTCGCAGTTC
ATATGTTTGCGAACATTCGGGCCTCTTCGAACTGAAGAGTTCATAGTTGT
CGGCCGGTGCTACCCATGGTGCACATGAACCCAAAATCGGAGAGTTTTCT
AATATGCATACTTCTAGAGCAATGGGGTCGGGCACTATCGGGCCGGGTCA
TGAGATACTTCACGGCATCCATCCACGGTATATCATGATCAACCGCCGAC
ATTCTCACGGTGCTGTGTTTGGTATCGGTCACGATTGCACATTGAGCGGT
GTTTGCCCTGGAGGGCGTTGGGACGGGGGTCGAATTCATTCTTGCAAAGT
GGCATGTAGGCGCCTCACTGAACGCGCGACCTTCCTAGGCGTCCCATGTC
AACAATCAAAGGCTTTCTGATTGCCGCCTTCCATGTTCGTTCACGAGCGA
GAATAAGTCTTGAAAGTGTGATTTGCCAAGCAGAGACGGCCCCCGAACCG
CCAGATCCATTTCAAACCAAATTTCCCCGGACAACCGCCGATATCATTTC
TTGTTTTCCTGCGTCTGTGACAATTCTACATTTTCGCCTCCAACGGTGAC
TCTCTGTACGCCGGTTTACTGTCATTCTCCGAGTGGCAATTTTTCGCCGT
TGTCCGACGTAACCTCGATCCCTTGACTATGACACAGCCAACGCACGAGT
GAAAGCCGGACTCGAAGATGCCCGCCGAATGGAGAGAAAATCTAGACGCC
AGCGAGAGGAGCTACCTGGGGACTGGGGGGCGGACAAGGGTCAGGGCACA
CGTGGCGGACAAGAACAGGCAAAGCGAGGCGGTGACGTTCCCTTTTCGCA
CAAGCATCCAACACGAGCAGAGACCGTCAGCAAGAGGATGGTTTCGGCGG
TTTGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19:32898..35705+

>mRNA_Ecto-sp13_S_contig19.6028.1 ID=mRNA_Ecto-sp13_S_contig19.6028.1|Name=mRNA_Ecto-sp13_S_contig19.6028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19:32898..35705+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGAGCCGGACGGGGTCTTCTGTGCGCCCGGGCGCTGTAAATACGA
TCGGAAGGCAACGTGTCGCTGCTCAGCCAACGCACGAGTGAAAGCCGGAC
TCGAAGATGCCCGCCGAATGGAGAGAAAATCTAGACGCCAGCGAGAGGAG
CTACCTGGGGACTGGGGGGCGGACAAGGGTCAGGGCACACGTGGCGGACA
AGAACAGGCAAAGCGAGGCGGTGACGTTCCCTTTTCGCACAAGCATCCAA
CACGAGCAGAGACCGTCAGCAAGAGGATGGTTTCGGCGGTTTGTTAA
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