mRNA_Ecto-sp13_S_contig19.6023.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19.6023.1
Unique NamemRNA_Ecto-sp13_S_contig19.6023.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19.6023.1 vs. uniprot
Match: D7FHB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.190e-33
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    1 QMDTLSYLMLEPSLCHGLFGEVQGQCKGIAAVHRSCKNDTAEHVATAFERGNYSKGAEVDRF 186
            QMDTLSYLML PSLCHGLFGEVQGQCKGIAAVHRSCKNDTAEHVATAFERGNYSKGAEVDRF
Sbjct:  693 QMDTLSYLMLGPSLCHGLFGEVQGQCKGIAAVHRSCKNDTAEHVATAFERGNYSKGAEVDRF 754
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BLAST of mRNA_Ecto-sp13_S_contig19.6023.1 vs. uniprot
Match: A0A6G0XIP9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIP9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.940e-7
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 QMDTLSYLMLEPSLCHGLFGEVQGQCKGIAAVHRSCKNDTAEHVATAFERGNYSKGAEVDRF 186
            QMD+LSYL+L+P L  G F E    C  + A+HR+   DT E +A A+  G  SK  ++  F
Sbjct:  545 QMDSLSYLILDPLLALGQFDEAVATCDAVRALHRTTARDTPEFIARAYRLGVLSKAQDMTSF 606
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BLAST of mRNA_Ecto-sp13_S_contig19.6023.1 vs. uniprot
Match: W4GD98_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD98_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.730e-5
Identity = 22/62 (35.48%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 QMDTLSYLMLEPSLCHGLFGEVQGQCKGIAAVHRSCKNDTAEHVATAFERGNYSKGAEVDRF 186
            Q+D+LSYL+L+P L  G   + +  C  + A+HR+   DT E ++ A++ G +SK  ++  F
Sbjct:  553 QVDSLSYLVLDPLLALGQVDDARRICDAVRALHRTTARDTPEFISRAYKLGVFSKAQDMTMF 614
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BLAST of mRNA_Ecto-sp13_S_contig19.6023.1 vs. uniprot
Match: A0A024U7B8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7B8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.240e-5
Identity = 22/62 (35.48%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 QMDTLSYLMLEPSLCHGLFGEVQGQCKGIAAVHRSCKNDTAEHVATAFERGNYSKGAEVDRF 186
            Q+D+LSYL+L+P L  G   + +  C+ I ++HR+   DT E ++ A+  G +SK  ++  F
Sbjct:  562 QVDSLSYLVLDPLLALGQVDDARRICESIRSLHRTTARDTPEFISRAYRLGVFSKAQDMTGF 623
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19.6023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHB8_ECTSI1.190e-3398.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0XIP9_9STRA2.940e-741.94Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4GD98_9STRA1.730e-535.48Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A024U7B8_9STRA3.240e-535.48Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19contigEcto-sp13_S_contig19:1..186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score129.4
Seed ortholog evalue5.7e-28
Seed eggNOG ortholog2880.D7FHB8
Preferred nameNAA25
Model size186
KEGG koko:K17973
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000003,GO:0000278,GO:0000281,GO:0000323,GO:0000902,GO:0000904,GO:0000910,GO:0000912,GO:0000915,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005794,GO:0005829,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0006810,GO:0006897,GO:0006909,GO:0006911,GO:0006928,GO:0006935,GO:0006955,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007409,GO:0007411,GO:0008092,GO:0008150,GO:0008152,GO:0008154,GO:0009605,GO:0009653,GO:0009888,GO:0009987,GO:0010324,GO:0010467,GO:0010591,GO:0010592,GO:0010631,GO:0010941,GO:0012505,GO:0016043,GO:0016192,GO:0016477,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0019953,GO:0022008,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030027,GO:0030029,GO:0030030,GO:0030036,GO:0030042,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030707,GO:0030855,GO:0030865,GO:0030866,GO:0031032,GO:0031175,GO:0031248,GO:0031252,GO:0031344,GO:0031346,GO:0031365,GO:0031414,GO:0031416,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033267,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043523,GO:0043524,GO:0043543,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044703,GO:0044837,GO:0044877,GO:0048308,GO:0048311,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051261,GO:0051301,GO:0051493,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051704,GO:0060429,GO:0060491,GO:0060548,GO:0061024,GO:0061564,GO:0061640,GO:0065007,GO:0071704,GO:0071840,GO:0090130,GO:0090132,GO:0090723,GO:0097374,GO:0097435,GO:0097458,GO:0097485,GO:0098657,GO:0099024,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0150034,GO:1901214,GO:1901215,GO:1901564,GO:1902407,GO:1902410,GO:1902493,GO:1902494,GO:1902743,GO:1902745,GO:1903047,GO:1903475,GO:1990234,GO:1990761
Exons1
EggNOG free text desc.N-terminal peptidyl-methionine acetylation
EggNOG OGsKOG2053@1,KOG2053@2759
Cds size183
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.346375-UTR-Ecto-sp13_S_contig19:0..31681462969.346375-UTR-Ecto-sp13_S_contig19:0..3Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.3576195-CDS-Ecto-sp13_S_contig19:3..1861681462969.3576195-CDS-Ecto-sp13_S_contig19:3..186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 4..186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19.6023.1prot_Ecto-sp13_S_contig19.6023.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19 4..186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19.6023.1

>prot_Ecto-sp13_S_contig19.6023.1 ID=prot_Ecto-sp13_S_contig19.6023.1|Name=mRNA_Ecto-sp13_S_contig19.6023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MDTLSYLMLEPSLCHGLFGEVQGQCKGIAAVHRSCKNDTAEHVATAFERG
NYSKGAEVDRF
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mRNA from alignment at Ecto-sp13_S_contig19:1..186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19.6023.1 ID=mRNA_Ecto-sp13_S_contig19.6023.1|Name=mRNA_Ecto-sp13_S_contig19.6023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19:1..186+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGGACACCTTGTCGTACCTGATGCTGGAGCCGAGCCTTTGCCACGG
GCTGTTCGGAGAAGTGCAGGGGCAGTGCAAGGGCATCGCTGCCGTGCACC
GGAGCTGCAAGAACGACACGGCCGAGCACGTGGCGACCGCGTTCGAGCGG
GGGAACTACTCCAAGGGCGCCGAGGTCGATCGCTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19:1..186+

>mRNA_Ecto-sp13_S_contig19.6023.1 ID=mRNA_Ecto-sp13_S_contig19.6023.1|Name=mRNA_Ecto-sp13_S_contig19.6023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19:1..186+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACCTTGTCGTACCTGATGCTGGAGCCGAGCCTTTGCCACGGGCT
GTTCGGAGAAGTGCAGGGGCAGTGCAAGGGCATCGCTGCCGTGCACCGGA
GCTGCAAGAACGACACGGCCGAGCACGTGGCGACCGCGTTCGAGCGGGGG
AACTACTCCAAGGGCGCCGAGGTCGATCGCTTC
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