mRNA_Ecto-sp13_S_contig18961.6007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18961.6007.1
Unique NamemRNA_Ecto-sp13_S_contig18961.6007.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: D8LPK1_ECTSI (EsV-1-182, RFC small subunit n=2 Tax=root TaxID=1 RepID=D8LPK1_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.230e-49
Identity = 81/107 (75.70%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDVCFVVQSA 321
            VTPES+VE++GEVPER FD LWSAVTS     HFE V DAVS FVGEGYPVGKVLSEIQ+RVV+S E+ +ADKA++CL L+ETDRCLNDGADEELQLL++C VVQSA
Sbjct:  219 VTPESVVEVAGEVPERAFDTLWSAVTSPSHLEHFEDVVDAVSTFVGEGYPVGKVLSEIQSRVVQSGELENADKAVICLELMETDRCLNDGADEELQLLNICLVVQSA 325          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: A0A7S2V1U9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1U9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.410e-21
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDVCFVV 312
            +T + I EISG +P      LW+A+ S    G F+ + + V     EG+P+G +L  +Q  V+    + D  KA +CLR+ E D+CLNDGA E LQLLD+  V+
Sbjct:   38 ITEDDIAEISGSIPHGATTALWTAMKS----GRFDNIENEVEKMACEGFPIGALLHRLQEEVIEEDGIEDIHKAAICLRIAEADKCLNDGASEALQLLDIAAVI 137          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: A0A6H5JEB4_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.990e-20
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDVCFV 309
            VTPE +V+I+G++P  V D LWSA+ S    G +  +  AV  F+  GYP+  +L ++Q   V  + + D +KA +C R+ E DRCL DG +EELQLLD+  V
Sbjct:  248 VTPEVLVDIAGKIPAEVKDALWSAIKS----GSYHKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHNKADICRRIAEADRCLIDGCNEELQLLDLASV 346          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: D8SR37_SELML (AAA domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SR37_SELML)

HSP 1 Score: 92.0 bits (227), Expect = 6.300e-20
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDVC 303
            +T + I+ +SG +P+ V   L  A TS    G F+     V+  + EGYPV ++ S++ + VV S E+ D  KA +C RL E D+CL DGADE LQL+DVC
Sbjct:  232 ITSKDILSVSGVIPDNVIQSLLQACTS----GVFDQAQKEVTNIIAEGYPVSQIFSQVYDHVVESPEISDEQKAKICQRLAEADKCLLDGADESLQLMDVC 328          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: A0A2J6LT11_LACSA (AAA domain-containing protein n=6 Tax=Asteraceae TaxID=4210 RepID=A0A2J6LT11_LACSA)

HSP 1 Score: 87.0 bits (214), Expect = 4.370e-18
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDVCFVVQSAF 324
            ++ + ++ +SG VP+ V  +L ++  S    G F++    V+  + EGYPV ++LS++ + VV S +V D  KA +C +L E+D+CL DGADE LQLLD C  +  AF
Sbjct:  229 ISSKDLISVSGVVPQEVVGDLLASCKS----GSFDSANKQVNNVIAEGYPVSQILSQLFDLVVESDDVSDEQKARICRKLGESDKCLVDGADEYLQLLDACSCMIKAF 332          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: A0A0A9E9J4_ARUDO (Replication factor C subunit 2 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9E9J4_ARUDO)

HSP 1 Score: 82.0 bits (201), Expect = 1.840e-17
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDV 300
            ++   ++ +SG +PE V   L++A  S    G F+     VS  + +GYPV +++S+  + +V + ++ D  KA VC +L ETD+CL DGADE LQLLDV
Sbjct:   50 ISSSDLISVSGVIPEDVVKSLFAACKS----GEFDVANKEVSNIIADGYPVSQLISQFLDVIVSADDIPDEQKARVCKKLGETDKCLVDGADEYLQLLDV 145          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: V7AYX4_PHAVU (Rep_fac_C domain-containing protein (Fragment) n=2 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7AYX4_PHAVU)

HSP 1 Score: 80.5 bits (197), Expect = 2.890e-17
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDVCFVVQSAF 324
            ++ E+++ +SG VPE+V   +  A  S    G+F+     V+ F+ EGYP  ++L+++   +V  +++ D  KA +  +L E D+CL DGADE LQLLDV      AF
Sbjct:   10 ISSENLISVSGVVPEKVVQAVLQACRS----GNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEDNDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTMQAF 113          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: A0A6J1IVB8_CUCMA (replication factor C subunit 4 n=2 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IVB8_CUCMA)

HSP 1 Score: 84.7 bits (208), Expect = 3.010e-17
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDV 300
            ++ + ++ +SG +P  V DEL++A  S    G+F+     V+  + EGYPV ++LS+I   V+ + ++ D  KA +C +L E D+CL DGADE LQLLDV
Sbjct:  228 ISSKDLISVSGIIPREVVDELFAACKS----GNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDV 323          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: A0A5A7QVC2_STRAF (Replication factor C subunit n=2 Tax=Lamiales TaxID=4143 RepID=A0A5A7QVC2_STRAF)

HSP 1 Score: 84.3 bits (207), Expect = 5.350e-17
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDV 300
            ++ + ++ +SG +PE V   L+SA  S    G+F+     V   + EGYPV ++LS++ + +V   ++ D  KA +C +L ETD+CL DGADE LQLLDV
Sbjct:  253 ISSKDLISVSGVIPEDVVQALFSACKS----GNFDTADKEVKNVIAEGYPVSQMLSQLYDVLVELDDIADDQKARICKKLAETDKCLVDGADEYLQLLDV 348          
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Match: A0A068UQY2_COFCA (Rep_fac_C domain-containing protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068UQY2_COFCA)

HSP 1 Score: 81.6 bits (200), Expect = 6.430e-17
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYPVGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDV 300
            ++   ++ +SG +PE V   L+SA  S    G+F+     V   + EGYPV ++LS++ + VV + ++ D  KA +C +L E D+CL DGADE LQLLDV
Sbjct:   90 ISSRDLISVSGVIPEDVVQALYSACRS----GNFDLADKEVKNVIAEGYPVSQMLSQLFDLVVEADDMSDEQKARICKKLGEADKCLVDGADEYLQLLDV 185          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18961.6007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPK1_ECTSI1.230e-4975.70EsV-1-182, RFC small subunit n=2 Tax=root TaxID=1 ... [more]
A0A7S2V1U9_9STRA4.410e-2140.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JEB4_9PHAE4.990e-2043.69AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8SR37_SELML6.300e-2043.56AAA domain-containing protein n=4 Tax=Selaginella ... [more]
A0A2J6LT11_LACSA4.370e-1839.81AAA domain-containing protein n=6 Tax=Asteraceae T... [more]
A0A0A9E9J4_ARUDO1.840e-1740.00Replication factor C subunit 2 n=1 Tax=Arundo dona... [more]
V7AYX4_PHAVU2.890e-1737.04Rep_fac_C domain-containing protein (Fragment) n=2... [more]
A0A6J1IVB8_CUCMA3.010e-1741.00replication factor C subunit 4 n=2 Tax=Cucurbita T... [more]
A0A5A7QVC2_STRAF5.350e-1741.00Replication factor C subunit n=2 Tax=Lamiales TaxI... [more]
A0A068UQY2_COFCA6.430e-1741.00Rep_fac_C domain-containing protein n=1 Tax=Coffea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18961contigEcto-sp13_S_contig18961:3..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViruses
Stop1
Start0
Seed ortholog score183.3
Seed ortholog evalue5.9e-44
Seed eggNOG ortholog654926.Q8QNA5_ESV1K
Model size327
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0016032,GO:0019058,GO:0019079,GO:0039686,GO:0039693,GO:0044403,GO:0044419,GO:0051704
Exons1
EggNOG free text desc.ATPase activity
EggNOG OGs4QAR1@10239,4QUNA@35237
Ec32 ortholog descriptionEsV-1-182 replication factor C small subunit
Ec32 orthologEc-06_005100.1
Cds size327
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.9432368-CDS-Ecto-sp13_S_contig18961:2..3291681462967.9432368-CDS-Ecto-sp13_S_contig18961:2..329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18961 3..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18961.6007.1prot_Ecto-sp13_S_contig18961.6007.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18961 3..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18961.6007.1

>prot_Ecto-sp13_S_contig18961.6007.1 ID=prot_Ecto-sp13_S_contig18961.6007.1|Name=mRNA_Ecto-sp13_S_contig18961.6007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
VTPESIVEISGEVPERVFDELWSAVTSRPQFGHFEAVTDAVSAFVGEGYP
VGKVLSEIQNRVVRSSEVVDADKALVCLRLLETDRCLNDGADEELQLLDV
CFVVQSAF*
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mRNA from alignment at Ecto-sp13_S_contig18961:3..329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18961.6007.1 ID=mRNA_Ecto-sp13_S_contig18961.6007.1|Name=mRNA_Ecto-sp13_S_contig18961.6007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18961:3..329+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACGCCGGAATCCATTGTCGAGATTTCGGGCGAGGTGCCCGAACGCGT GTTTGACGAGCTGTGGTCGGCGGTGACTTCGCGGCCACAGTTTGGGCACT TTGAGGCCGTGACGGACGCTGTTTCCGCGTTCGTTGGGGAGGGTTATCCC GTGGGAAAAGTGTTGTCGGAGATTCAGAACAGAGTCGTGCGTTCGAGCGA AGTCGTGGATGCCGACAAGGCTCTCGTCTGCCTCAGGTTGCTGGAAACAG ATCGGTGCCTGAACGATGGCGCAGACGAGGAGCTGCAGTTGCTAGACGTT TGTTTCGTTGTTCAAAGTGCGTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18961:3..329+

>mRNA_Ecto-sp13_S_contig18961.6007.1 ID=mRNA_Ecto-sp13_S_contig18961.6007.1|Name=mRNA_Ecto-sp13_S_contig18961.6007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18961:3..329+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACGCCGGAATCCATTGTCGAGATTTCGGGCGAGGTGCCCGAACGCGT
GTTTGACGAGCTGTGGTCGGCGGTGACTTCGCGGCCACAGTTTGGGCACT
TTGAGGCCGTGACGGACGCTGTTTCCGCGTTCGTTGGGGAGGGTTATCCC
GTGGGAAAAGTGTTGTCGGAGATTCAGAACAGAGTCGTGCGTTCGAGCGA
AGTCGTGGATGCCGACAAGGCTCTCGTCTGCCTCAGGTTGCTGGAAACAG
ATCGGTGCCTGAACGATGGCGCAGACGAGGAGCTGCAGTTGCTAGACGTT
TGTTTCGTTGTTCAAAGTGCGTTTTAA
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