mRNA_Ecto-sp13_S_contig18917.5986.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18917.5986.1
Unique NamemRNA_Ecto-sp13_S_contig18917.5986.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: D7FW20_ECTSI (Glycogen synthase kinase-3 beta (GSK-3 beta) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW20_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.050e-73
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    4 VLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMPSGGGG 342
            VLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMPSGGGG
Sbjct:  322 VLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMPSGGGG 434
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: UPI000C6E526C (glycogen synthase kinase-3 beta-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E526C)

HSP 1 Score: 155 bits (391), Expect = 2.200e-45
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMP 327
            +VLGTPT+E+IR MN NY+EFKFPQIKAHPW+ VFR+RTPPEA+D+VS++L Y P  R+ PL+ C+H F DELR+ G KLPNG+ LP LF FTE EL   P L S L+P
Sbjct:   41 KVLGTPTKEQIREMNRNYTEFKFPQIKAHPWQKVFRARTPPEAIDLVSRLLEYTPSARITPLQACAHTFFDELREPGTKLPNGRELPPLFNFTENELGIQPSLNSILIP 149
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: A0A1B6J1N8_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6J1N8_9HEMI)

HSP 1 Score: 150 bits (380), Expect = 1.470e-44
Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMP 327
            +VLGTPTRE+IR MN NY+EFKFPQIK+HPW+ VFR+RTP EA+D+VS++L Y P  R+ PL+ C+H F DELR+   +LPNG+ LP LF FTE EL+  P L S L+P
Sbjct:    8 KVLGTPTREQIREMNPNYTEFKFPQIKSHPWQKVFRARTPAEAIDLVSRLLEYTPSSRISPLQACAHNFFDELREPNTRLPNGRALPPLFNFTETELNIQPSLNSVLLP 116
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: A0A0A9XG80_LYGHE (Glycogen synthase kinase-3 beta n=6 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XG80_LYGHE)

HSP 1 Score: 158 bits (400), Expect = 1.940e-44
Identity = 71/114 (62.28%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMPSGGGG 342
            +VLGTPTRE+IR MN NY+EFKFPQIK+HPW+ VFR+RTPPEA+D+VS++L Y P  R+ PL+ C+H F DELR+   +LPNG+ LP LF FT+ ELS  P L S L+P  GGG
Sbjct:  283 KVLGTPTREQIREMNPNYTEFKFPQIKSHPWQKVFRARTPPEAIDLVSRLLEYTPSSRISPLQACAHNFFDELREPNTRLPNGRALPPLFNFTDQELSIQPSLNSILIPQKGGG 396
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: A0A1Z5LB52_ORNMO (Glycogen synthase kinase-3 beta (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LB52_ORNMO)

HSP 1 Score: 154 bits (388), Expect = 2.500e-44
Identity = 69/109 (63.30%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMP 327
            +VLGTPT+E+IR MN NY+EFKFPQIKAHPW+ VFR+RTPPEA+D+VS++L Y P  R  PL+ C+H F D+LR+ G +LPNG+ LP LF FTE ELS  P L S L+P
Sbjct:  110 KVLGTPTKEQIREMNRNYTEFKFPQIKAHPWQKVFRARTPPEAIDLVSRLLEYTPSARTTPLQACAHAFFDDLREPGARLPNGRDLPPLFNFTEQELSIQPHLNSILIP 218
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: A0A7I8VC93_9ANNE (DgyrCDS2071 n=2 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VC93_9ANNE)

HSP 1 Score: 156 bits (395), Expect = 4.550e-44
Identity = 73/110 (66.36%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMPS 330
            +VLGTPTRE+IR MN NY+EFKFPQIKAHPW  VFR RTP EALD+VSK+L Y P KR+ PLE C+H F DELR +  +LPNG+PLP LF FTE EL+  P L   L+PS
Sbjct:  273 KVLGTPTREQIREMNPNYTEFKFPQIKAHPWGKVFRPRTPSEALDLVSKLLEYTPTKRIIPLEACAHSFFDELRGQNTRLPNGRPLPPLFNFTEKELAVRPALQGRLIPS 382
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: A0A024AHA0_9NEOP (Glycogen synthase kinase-3 beta (Fragment) n=31 Tax=Neoptera TaxID=33340 RepID=A0A024AHA0_9NEOP)

HSP 1 Score: 154 bits (388), Expect = 7.710e-44
Identity = 69/109 (63.30%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMP 327
            +VLGTPTRE+IR MN NY+EFKFPQIK+HPW+ VFR+RTPPEA+D+VS++L Y P  R+ PL+ C+H F DELR+   +LPNG+ LP LF FTE ELS  P L S L+P
Sbjct:  191 KVLGTPTREQIREMNPNYTEFKFPQIKSHPWQKVFRARTPPEAIDLVSRLLEYTPSSRISPLQACAHTFFDELRETNTRLPNGRELPPLFNFTEQELSIQPSLNSALLP 299
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: A0A6H5H371_9HEMI (Protein kinase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H371_9HEMI)

HSP 1 Score: 157 bits (396), Expect = 9.030e-44
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMPSGGGG 342
            +VLGTPTRE+IR MN NY+EFKFPQIK+HPW+ VFR+RTPPEA+++ S++L Y P  R+ PL+ C+H F DELR+   +LPNG+ LP LF FTE ELS  P L S L+P  GGG
Sbjct:  285 KVLGTPTREQIREMNPNYTEFKFPQIKSHPWQKVFRARTPPEAIELASRLLEYTPSSRISPLQACAHSFFDELREPNTRLPNGRALPPLFNFTEQELSIQPSLNSLLIPRNGGG 398
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: A0A850VQ52_FREMA (Glycogen synthase kinase-3 beta (Fragment) n=1 Tax=Fregata magnificens TaxID=37042 RepID=A0A850VQ52_FREMA)

HSP 1 Score: 151 bits (382), Expect = 9.940e-44
Identity = 70/110 (63.64%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMPS 330
            +VLGTPTRE+IR MN NY+EFKFPQIKAHPW  VFR RTPPEA+ + S++L Y P  R+ PLE C+H F DELR   VKLPNG+  P LF FT  ELS+NP L S L+P+
Sbjct:  113 KVLGTPTREQIREMNPNYTEFKFPQIKAHPWSKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGREKPALFNFTSQELSSNPSLASILIPA 222
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BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Match: A0A7L0EHT9_TROML (GSK3B synthase (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L0EHT9_TROML)

HSP 1 Score: 150 bits (380), Expect = 1.110e-43
Identity = 70/110 (63.64%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    1 QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKMLAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSANPRLLSYLMPS 330
            +VLGTPTRE+IR MN NY+EFKFPQIKAHPW  VFR RTPPEA+ + S++L Y P  R+ PLE C+H F DELR   VKLPNG+  P LF FT  ELS+NP L S L+P+
Sbjct:   73 KVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGREKPALFNFTTQELSSNPSLASILIPA 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18917.5986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW20_ECTSI1.050e-73100.00Glycogen synthase kinase-3 beta (GSK-3 beta) n=1 T... [more]
UPI000C6E526C2.200e-4564.22glycogen synthase kinase-3 beta-like n=1 Tax=Centr... [more]
A0A1B6J1N8_9HEMI1.470e-4461.47Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]
A0A0A9XG80_LYGHE1.940e-4462.28Glycogen synthase kinase-3 beta n=6 Tax=Lygus hesp... [more]
A0A1Z5LB52_ORNMO2.500e-4463.30Glycogen synthase kinase-3 beta (Fragment) n=1 Tax... [more]
A0A7I8VC93_9ANNE4.550e-4466.36DgyrCDS2071 n=2 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A024AHA0_9NEOP7.710e-4463.30Glycogen synthase kinase-3 beta (Fragment) n=31 Ta... [more]
A0A6H5H371_9HEMI9.030e-4461.40Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A850VQ52_FREMA9.940e-4463.64Glycogen synthase kinase-3 beta (Fragment) n=1 Tax... [more]
A0A7L0EHT9_TROML1.110e-4363.64GSK3B synthase (Fragment) n=2 Tax=Neognathae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18917contigEcto-sp13_S_contig18917:1..1776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score235.7
Seed ortholog evalue1e-59
Seed eggNOG ortholog2880.D7FW20
Model size342
KEGG koko:K03083
KEGG Pathwayko01521,ko04012,ko04062,ko04110,ko04150,ko04151,ko04310,ko04340,ko04341,ko04360,ko04390,ko04510,ko04550,ko04657,ko04660,ko04662,ko04711,ko04722,ko04728,ko04910,ko04916,ko04917,ko04919,ko04931,ko04932,ko04934,ko05010,ko05160,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05210,ko05213,ko05215,ko05217,ko05224,ko05225,ko05226,map01521,map04012,map04062,map04110,map04150,map04151,map04310,map04340,map04341,map04360,map04390,map04510,map04550,map04657,map04660,map04662,map04711,map04722,map04728,map04910,map04916,map04917,map04919,map04931,map04932,map04934,map05010,map05160,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05210,map05213,map05215,map05217,map05224,map05225,map05226
KEGG ModuleM00677
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0658@2759
Ec32 ortholog descriptionGlycogen synthase kinase-3 beta (GSK-3 beta)
Ec32 orthologEc-01_003040.1
EC2.7.11.26
Cds size342
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.322756-CDS-Ecto-sp13_S_contig18917:0..1261681462966.322756-CDS-Ecto-sp13_S_contig18917:0..126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18917 1..126 -
1681462966.3431966-CDS-Ecto-sp13_S_contig18917:854..9441681462966.3431966-CDS-Ecto-sp13_S_contig18917:854..944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18917 855..944 -
1681462966.3564227-CDS-Ecto-sp13_S_contig18917:1650..17761681462966.3564227-CDS-Ecto-sp13_S_contig18917:1650..1776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18917 1651..1776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18917.5986.1prot_Ecto-sp13_S_contig18917.5986.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18917 1..1776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18917.5986.1

>prot_Ecto-sp13_S_contig18917.5986.1 ID=prot_Ecto-sp13_S_contig18917.5986.1|Name=mRNA_Ecto-sp13_S_contig18917.5986.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
QVLGTPTREEIRAMNYNYSEFKFPQIKAHPWKGVFRSRTPPEALDVVSKM
LAYDPLKRVKPLEVCSHEFVDELRQEGVKLPNGKPLPTLFEFTELELSAN
PRLLSYLMPSGGGG
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mRNA from alignment at Ecto-sp13_S_contig18917:1..1776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18917.5986.1 ID=mRNA_Ecto-sp13_S_contig18917.5986.1|Name=mRNA_Ecto-sp13_S_contig18917.5986.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18917:1..1776- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTACTGGGGACACCGACGCGAGAAGAGATTCGGGCGATGAACTACAA
CTACTCGGAGTTCAAGTTCCCGCAGATCAAGGCGCATCCGTGGAAGGGAG
TGTTTAGGTCTAGGACCCCTCCCGAGGTGAGCGGTGACAGCAAAAGAACC
CGTTTTTTTTCATGTTTATTTCGTGGTTTTTTTATTGTAACGGTTTTTAG
CGTGAAGATACCGTAGTTGTTGGAGGTTGTTTCGCCAAGTTTCGGTTTGT
GGGTCGAATGTTGGTGTTGCCTAGGAATCACCGAGAGTAGTAAGTGTGAT
TTGATGAGCTATTTGGGTTTTATGTCGAATTTTGGTGTTGTTCATGAGTC
ACCCAGATCACAAGCAAGTGTGGGCCAACTTGAAGCACGACCGCGGCACT
CTCACCGGCTGTTCACACCTTGATTGTCCGATCGTTACGAATCGGAAAGT
ACACCGCCCAACGTATGCATGGCTAGACAACAGCAGTAGCTCTTGGACCT
GTCGCCTCCAGTGCGGTGTCTGTCTCTGGTGTTCTTGCACAAACGTGCAC
GATGAACCAACGTACTTGCTCGTTTTGTGTCTGCGGAGAGTAGACGAAAG
TAGTGTGCGGTTACAGTAGGCCAAGAACGGTGTCGCTACACCTTTAACAC
GTGAGCCCCTGGATACACGAGTTGAATACATGCGCACACGCGTTGGCGAT
GGGCGTTCTTGCGGTCGCTCGTCGTTCTTGTTTTTTGTTTTTGCTGATCG
ATGCCCCCTCCACCCTATCTGCTGGATGGGCGTCCTTTCCTCCCTCTGCC
TTCGTGCCGCCGCGCCTTTGTGTTTCCAAAAGGCGCTGGATGTGGTTAGC
AAGATGCTGGCATACGATCCGTTAAAGCGGGTCAAGCCGCTGGAGGTCTG
CAGCCACGAGTTCGTCGACGAGGTGCGTAGAGCAGTCACAACGTCATTAC
CTTCGCCAAGTGTTGCACAGCAGCGGTGCCCGACCGGTGTCTTATAGTTG
TGTCGACCTAGACTTGTTTCCTCGTCGTCGCGGTTTCAGCAAGGCCTGGC
ACGGAATCGTCCCGCGTCATGACAACGACACCGCGTTACAATACAACAAA
GCGAAATTGGCGTGTTTTAAGAGGAAAGGGATGTTTGGTTTGAGACAAGC
TGGGTTGCCAATCTCAGCAAGGCGTCGTCGGCGTGTTTACGCCTTCTTGC
GTTCTTGTTGTTGAACTCTTTTGGACGCAATTTTATCGCACCAGGTTAGG
TTGTGCTCCAACGTCGTTCGTGACTTCAGAGACGCAGCCTCGCAATGCAT
CTGCCGGTCATTTTTTCCGGCTTTGAGTGTTTTTGCCGATTTTTGTTGTT
GTTGTTCGGTCTCGTTTCCCCTTTTTTCGAATCACACGGCGTTGTGTAAG
CCCGTCTCTCGCGTCACCGACGTTTCTGGTGTCGATATCTAGCCCGTGAT
TGCCGGCAGATTTGCTCTTGTTGATATATATTGTGAAGCATCGTTTTTTT
TGTAGCGAAAAGTCGCGTGACGGTCGAACAATCCTGTGCACTGCTGTGAC
ATTTTCTTGTCACGTGAAAATCCTAAGCTCAGGCCATTTGAGTACCTTTT
TCCCCTCCGTCTACCTCCTCTTGTCCTGTTGTTGCTCGAAACAAAAACAG
CTGCGCCAAGAGGGAGTCAAGCTTCCGAACGGTAAGCCATTGCCGACGCT
CTTCGAGTTCACAGAGCTGGAGCTCTCCGCCAACCCGCGGCTGCTGTCTT
ACCTCATGCCCTCGGGCGGTGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18917:1..1776-

>mRNA_Ecto-sp13_S_contig18917.5986.1 ID=mRNA_Ecto-sp13_S_contig18917.5986.1|Name=mRNA_Ecto-sp13_S_contig18917.5986.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18917:1..1776- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTACTGGGGACACCGACGCGAGAAGAGATTCGGGCGATGAACTACAA
CTACTCGGAGTTCAAGTTCCCGCAGATCAAGGCGCATCCGTGGAAGGGAG
TGTTTAGGTCTAGGACCCCTCCCGAGGCGCTGGATGTGGTTAGCAAGATG
CTGGCATACGATCCGTTAAAGCGGGTCAAGCCGCTGGAGGTCTGCAGCCA
CGAGTTCGTCGACGAGCTGCGCCAAGAGGGAGTCAAGCTTCCGAACGGTA
AGCCATTGCCGACGCTCTTCGAGTTCACAGAGCTGGAGCTCTCCGCCAAC
CCGCGGCTGCTGTCTTACCTCATGCCCTCGGGCGGTGGGGGG
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