mRNA_Ecto-sp13_S_contig18901.5978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18901.5978.1
Unique NamemRNA_Ecto-sp13_S_contig18901.5978.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: D8LCG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG5_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 5.090e-118
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLERSWDPNSALNVAKRKSSSA 543
            +IALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLE SWDPNSALNVAKRK+SSA
Sbjct:  146 EIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHSWDPNSALNVAKRKNSSA 326
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: A0A7S2V7P4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7P4_9STRA)

HSP 1 Score: 243 bits (620), Expect = 3.370e-77
Identity = 122/164 (74.39%), Postives = 140/164 (85.37%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLERS 492
            +I LLPLDVLKIKAQTNPE+L GRGV+++F +EG GLYRGAGWTAARNAPGSFALFGGA+ +KE +F LE  GDAT FQ F ASI GA SSITVAAPLDVIK R+QNRPFDSPESGM I+  L+  EG GAFFKGLTPK+ VVGPKLIFSFT+AQ++IS  E++
Sbjct:  184 EIVLLPLDVLKIKAQTNPETLKGRGVMNLFREEGMGLYRGAGWTAARNAPGSFALFGGAAFVKENLFGLENYGDATWFQDFVASICGATSSITVAAPLDVIKTRIQNRPFDSPESGMKILNDLIKNEGFGAFFKGLTPKLAVVGPKLIFSFTIAQQMISVFEKA 347
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: A0A7S2SM84_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SM84_9STRA)

HSP 1 Score: 243 bits (620), Expect = 7.240e-77
Identity = 122/163 (74.85%), Postives = 137/163 (84.05%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLER 489
            +IALLPLD+LKIKAQTNPE L GRGV DIF KEGRGLYRGAGWTAARNAPGSFALFGGA+V    VF L +P DAT+FQ F ASI GAV+SITVAAPLDVIK RVQNRPF+SPE G+ I++ ++  EG GAFFKGL PKI+VVGPKLIFSFTVAQ  I + E+
Sbjct:  211 EIALLPLDILKIKAQTNPEVLKGRGVFDIFLKEGRGLYRGAGWTAARNAPGSFALFGGAAVTHYKVFGLSKPSDATVFQNFVASILGAVASITVAAPLDVIKTRVQNRPFESPEKGVTIIKNIVQNEGFGAFFKGLVPKILVVGPKLIFSFTVAQTAIQYFEK 373
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: A0A3F2RML0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RML0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 3.220e-75
Identity = 117/166 (70.48%), Postives = 140/166 (84.34%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLERSWD 498
            +IALLPLDVLKI+AQTNP ++AG+GVV+IF  EG  LYRGAGWTAARNAPGSFALFGG+++ KEY+F+LE    AT FQ F ASI+GA +SI VA PLDVIK R+Q+RPFDSPESGM+IVR LL TEGP A FKGL PK+ VVGPKL+FSF VAQ LI++ E+S++
Sbjct:  138 EIALLPLDVLKIRAQTNPAAIAGKGVVNIFTTEGFALYRGAGWTAARNAPGSFALFGGSALAKEYIFQLEDYNSATFFQNFVASISGASASIIVAQPLDVIKTRIQSRPFDSPESGMSIVRNLLKTEGPAAMFKGLIPKLSVVGPKLVFSFAVAQHLIAYFEKSFN 303
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: A0A077WSJ9_9FUNG (Uncharacterized protein n=2 Tax=Mucorales TaxID=4827 RepID=A0A077WSJ9_9FUNG)

HSP 1 Score: 236 bits (602), Expect = 5.480e-75
Identity = 116/164 (70.73%), Postives = 136/164 (82.93%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLERS 492
            +IALLPLDVLKIK QTNPE+  GRG + I   EG GLYRGAGWTAARNAPGSFALFGG++ +KEY+F L+    AT FQ FCASI GAV+SITVAAPLDV+K R+QNR FD+PESG+ I++ L+  EG G FFKGLTPKI+VVGPKLIFSFTVAQ+LI F ++S
Sbjct:  144 EIALLPLDVLKIKRQTNPEAFRGRGFLTIIKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYIFHLDNYNQATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFDNPESGLNIIKDLIKKEGFGGFFKGLTPKILVVGPKLIFSFTVAQQLIPFFDKS 307
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: H3H0V9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0V9_PHYRM)

HSP 1 Score: 229 bits (585), Expect = 6.250e-74
Identity = 115/165 (69.70%), Postives = 136/165 (82.42%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLERSW 495
            +IALLPLDVLKI+AQTNP ++AG+GV  IF  EG  LYRGAGWTAARNAPGSFALFGG+++ KEYVF+LE   +AT FQ F ASI+GA +SI VA PLDVIK R+Q+RPFDSPESGM +VR LL +EG GA FKGL PK+ VVGPKL+FSF VAQ LI+  E+S+
Sbjct:   34 EIALLPLDVLKIRAQTNPAAIAGKGVAHIFKTEGFALYRGAGWTAARNAPGSFALFGGSALAKEYVFQLEDYNNATFFQNFVASISGASASIIVAQPLDVIKTRIQSRPFDSPESGMTVVRNLLKSEGTGALFKGLIPKLSVVGPKLVFSFAVAQHLIAHFEKSF 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: A0A1X2H340_SYNRA (Mitochondrial carrier domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H340_SYNRA)

HSP 1 Score: 232 bits (591), Expect = 2.110e-73
Identity = 115/168 (68.45%), Postives = 135/168 (80.36%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLERSWDPN 504
            +IALLPLDVLKIK QTNPE+  GRG + I   EG GLYRGAGWTAARNAPGSFALFGG++ +KEY+F L+   +AT  Q FCASI GAV+SITVAAPLDV+K R+QNR FD+PESG+ I++ L+  EG G FFKGLTPKI+VVGPKLIFSFT+AQ+LI    R  D N
Sbjct:  135 EIALLPLDVLKIKRQTNPEAFRGRGFLTIIKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYLFSLKDYNEATFMQNFCASIGGAVASITVAAPLDVVKTRIQNRNFDNPESGVNIIKNLIKQEGFGGFFKGLTPKILVVGPKLIFSFTIAQQLIPVFHRMLDAN 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: K3XBY9_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XBY9_GLOUD)

HSP 1 Score: 231 bits (590), Expect = 3.180e-73
Identity = 114/168 (67.86%), Postives = 136/168 (80.95%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLERSWDPN 504
            +IALLPLDVLKI+AQTNP ++AGRGV  IF +EG  LYRGAGWTAARNAPGSFALFGG++  KEY+F LE   +AT FQ F ASI+GA +SI VA PLDVIK RVQ RPFDSPESG+ +++ LL  EGPGA FKGL PK+ VVGPKL+FSF VAQ LI++ E+++  N
Sbjct:  139 EIALLPLDVLKIRAQTNPAAIAGRGVFAIFQQEGLALYRGAGWTAARNAPGSFALFGGSAFAKEYIFNLENFNEATFFQNFVASISGASASIIVAQPLDVIKTRVQARPFDSPESGVTVIKNLLKNEGPGALFKGLVPKLSVVGPKLVFSFAVAQHLIAYFEKAFGAN 306
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: A0A168QEE7_ABSGL (Uncharacterized protein n=2 Tax=Absidia TaxID=4828 RepID=A0A168QEE7_ABSGL)

HSP 1 Score: 231 bits (590), Expect = 4.570e-73
Identity = 115/163 (70.55%), Postives = 133/163 (81.60%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLER 489
            +IALLPLDVLKIK QTNPE+  GRG + I   EG GLYRGAGWTAARNAPGSFALFGG++ +KEY+F LE    AT FQ FC+SI GAV+SITVAAPLDV+K R+QNR FD+PESGM I++ L+  EG   FFKGLTPKI+VVGPKLIFSFTVAQ+LI   +R
Sbjct:  144 EIALLPLDVLKIKRQTNPEAFRGRGFLTIVRDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYMFSLENYNQATFFQNFCSSIGGAVASITVAAPLDVVKTRIQNRNFDNPESGMNIIKNLIKQEGFAGFFKGLTPKILVVGPKLIFSFTVAQQLIPVFDR 306
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Match: A0A068SAI5_9FUNG (Mitochondrial carrier protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SAI5_9FUNG)

HSP 1 Score: 231 bits (588), Expect = 7.210e-73
Identity = 115/163 (70.55%), Postives = 132/163 (80.98%), Query Frame = 1 
Query:    1 QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAPGSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLER 489
            +IALLPLDVLKIK QTNPE+  GRG + I   EG GLYRGAGWTAARNAPGSFALFGG++ +KE++F L     AT FQ FCASI GAV+SITVAAPLDV+K R+QNR F++PESG  IV+ L+  EGP AFFKGLTPKI+VVGPKLIFSFTVAQ LI   +R
Sbjct:  146 EIALLPLDVLKIKRQTNPEAFRGRGFLTIIKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEHIFHLHDYNKATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFENPESGFKIVKDLVKNEGPSAFFKGLTPKILVVGPKLIFSFTVAQHLIPVFDR 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18901.5978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCG5_ECTSI5.090e-11898.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V7P4_9STRA3.370e-7774.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SM84_9STRA7.240e-7774.85Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A3F2RML0_9STRA3.220e-7570.48Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A077WSJ9_9FUNG5.480e-7570.73Uncharacterized protein n=2 Tax=Mucorales TaxID=48... [more]
H3H0V9_PHYRM6.250e-7469.70Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1X2H340_SYNRA2.110e-7368.45Mitochondrial carrier domain-containing protein n=... [more]
K3XBY9_GLOUD3.180e-7367.86Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A168QEE7_ABSGL4.570e-7370.55Uncharacterized protein n=2 Tax=Absidia TaxID=4828... [more]
A0A068SAI5_9FUNG7.210e-7370.55Mitochondrial carrier protein n=2 Tax=Lichtheimia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18901contigEcto-sp13_S_contig18901:108..2754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score347.8
Seed ortholog evalue3e-93
Seed eggNOG ortholog2880.D8LCG5
Preferred nameYHM1
Model size546
KEGG koko:K15107
KEGG TC2.A.29.14.3
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0001408,GO:0001409,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0006862,GO:0006863,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0015215,GO:0015216,GO:0015605,GO:0015748,GO:0015851,GO:0015854,GO:0015865,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0019866,GO:0022857,GO:0030003,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071840,GO:0072530,GO:0098771,GO:0140140,GO:1901679,GO:1903716,GO:1903790,GO:1904823,GO:1990542
Exons3
EggNOG free text desc.high-affinity glutamate transmembrane transporter activity
EggNOG OGsKOG0750@1,KOG0750@2759
Cds size546
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.7683353-CDS-Ecto-sp13_S_contig18901:107..3791681462965.7683353-CDS-Ecto-sp13_S_contig18901:107..379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18901 108..379 +
1681462965.778602-CDS-Ecto-sp13_S_contig18901:1347..14831681462965.778602-CDS-Ecto-sp13_S_contig18901:1347..1483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18901 1348..1483 +
1681462965.7868836-CDS-Ecto-sp13_S_contig18901:2616..27541681462965.7868836-CDS-Ecto-sp13_S_contig18901:2616..2754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18901 2617..2754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18901.5978.1prot_Ecto-sp13_S_contig18901.5978.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18901 108..2754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18901.5978.1

>prot_Ecto-sp13_S_contig18901.5978.1 ID=prot_Ecto-sp13_S_contig18901.5978.1|Name=mRNA_Ecto-sp13_S_contig18901.5978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
QIALLPLDVLKIKAQTNPESLAGRGVVDIFAKEGRGLYRGAGWTAARNAP
GSFALFGGASVMKEYVFKLERPGDATLFQTFCASIAGAVSSITVAAPLDV
IKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFS
FTVAQRLISFLERSWDPNSALNVAKRKSSSA*
back to top

mRNA from alignment at Ecto-sp13_S_contig18901:108..2754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18901.5978.1 ID=mRNA_Ecto-sp13_S_contig18901.5978.1|Name=mRNA_Ecto-sp13_S_contig18901.5978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18901:108..2754+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATTGCGCTCCTCCCCCTAGACGTCCTCAAGATCAAGGCGCAGACCAA
CCCGGAGAGCCTGGCCGGCCGTGGGGTGGTGGACATCTTCGCCAAGGAAG
GCAGGGGCCTCTACCGCGGGGCCGGCTGGACCGCCGCGCGTAACGCTCCG
GGATCGTTCGCGCTGTTCGGCGGCGCCTCGGTGATGAAGGAGTACGTGTT
CAAGCTCGAGCGCCCCGGGGACGCGACCCTGTTCCAGACCTTCTGCGCCT
CCATCGCCGGCGCGGTTTCGAGGTACGTGCGTTGTCGGTCCTTTTTTCCT
CAGTTGTTGTTGGCGGGGTGGTGTTAGTGCGGTCGGTTGGGGTCAGGCAC
AGGCGCGGGGCTTTCGAGGTGGTACGCGAGAGTCGTCGGGGCTGGTTTGC
GTTGTTGTTTGCTGGCGCGGTCGGTCGGGGTCGGGAGAAGGGCGGGAGGC
TCTCGATGTACGCGCGAGATTCGGGGATTGGTGGTTGTTGTTGTTACTTG
CCGCGGTGTTGTTGGCGCGGTCGGCTGAGGCGAGGAAAAGACGGCGGGCT
TTTTTGGCTTGAGAGACGTCGGGCCTTGGTTGTTTTGTTCTCGTTGCCGG
GGTATTGTCGGAGCGGTCGGTCGGGGTCAGGAAAAGGCGGTGGGCTTTTG
AAATGCGCTCGAGTCGGGCCTTGGTTGTTTTTTTGCCTGCGGGGATGCGG
GCGCGGTCGGGTAGCGTCAGGGAAAGGGCGGGGAGGGGGGCATTGGGGAC
GCCCTGAGGGGACCAGGCAAGGGGTGGGGTCTTGTGGCTCGCAGCTTTCT
GATTGGCCAAAGAGACTTCGGTCGAAGATGCAAATGTCGTTTTGTTCAAT
GCTCCGATGGCTGTCAGCACGGTGGTGGGCGAGGGGTAAAGGGGCGGAGC
TGATAGCACGGGGATGTCGCCGTGTCGACATGAAATGATGTCTCCTGACA
TGATGACCGAATTGTCGGTGTTATTGTCGGGTGTGATTGCGCCGCGAGCC
GTTGGTCAGCCGCTTCTTCTCTCTCTCGCCTTTTGCACGGGACCGACTCA
TACATGGAAACGGGTGAGTTTTCATATTTTCAATCCCAAAACACCGCCCG
CCCGTGCCTCTAAGACACGACGTGCCCTGCTTGACACAGATTCGCCTGCA
TGATATCTACCCCTCTCTCCGTTCGTGCCGGTCACGATTTCCCTCGATGT
CGACGTTGTTTGTGCGCGTGTGTGCCGATGCTGCGAACAGCATCACCGTC
GCAGCCCCGCTCGACGTCATCAAGGTTCGAGTCCAGAACCGCCCTTTCGA
TTCGCCCGAGAGCGGGATGGCTATCGTGCGCAAGCTCCTGGCGACCGAGG
GGCCTGGTGCTTTCTTCAAGGGATTGGTAAGTTTGATATTTAGCAGCACG
TGCGCCGCGGTAGATGACCGATGCTAATTACTGTAGAAAGGGAAACTCAG
AGTCGTGCATGCCGTACGTAGTCGCCAGACCATTGATCTCGCATCCTTAC
AAGGCCGGGACGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTCACGTC
ACCAAGCGCGAAGCGCCGTGCTATGGTAGAAGGGGGTGATACGAAAATAA
CCCAAACGTCCCCATCCACAAATGGCAGGCAAATGACGGTTATTAGATTG
TTATTTGTTTGTCCACAAACCTTTTGCACTTGTGGGAGAAAAGGTGTAGT
CCTGTTTCGGTGATCGTAATAGGACGCAGCCAGTAGGTAAAGAGTGTGTC
TGTCTCCCTGCCCGAAAGTATAAAATATGAGGTGACATCCCTACCGGATA
GGAAAATGGTACTCAGCGACCCTTTTGCTGTTTTATGACGGCGGTGGGTT
TGGCTGTACACAGCTTTTGCAGACGCTTGTAGCATGGATGCTCCCCCCCC
GCCCATAGATTACAAATCACGCACAATTCGCGGAGCACGACATCTATTAC
CACCGCGCTTCGTTCTTATTTTGGGTCCCAAACACCATACGACGTTTGTT
CGATAATTCATCTAATCTACGCTGCGCTCCTTGCTGTTCTCGGAATAGAT
CATTATTTCCCTCTATGTCACAGCAGTTTTTTTCGGCGTTCTTTGCCTCA
GGTGAGATACGAAAACTCCAAAAGCCGCGGGGGGTAGAACACAAATATTC
ATCGTCGCGGTGGGTGGGACCAATTTTGGTCGGTCTCGGCCTTCTCGCTG
CTGAGTCTTGCTGCCGCTGCTGCTGTAACTGGTTCGGCGACGCCCAACGC
GCAACCGCACGTTCTAATTTCCCTGCGGAGTGTTAAGTGCAGCATTCCTG
GCCGAGCACCTCTTCTTATGGCCAAATTCTTGCATTTTGTATCGCACCCC
ATTTCCATCCGATCTTCCACACACGGCACCCCCCTTCCTTGAAAATTATA
GTTCGTATTTTGTCGTGTCGGGTCGTGCACCAAACATACACCGACGACTC
CCTAACACAACTAATGCCGTGGTGTGGTATGGTGTATCACGACTGGATGA
CGAAAACAGACGCCGAAGATCATCGTGGTGGGGCCGAAGCTCATCTTCTC
CTTCACTGTGGCGCAGCGCCTCATCTCTTTCCTGGAGCGCTCGTGGGACC
CCAACAGCGCCCTCAACGTTGCCAAGAGGAAGAGCTCTTCGGCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18901:108..2754+

>mRNA_Ecto-sp13_S_contig18901.5978.1 ID=mRNA_Ecto-sp13_S_contig18901.5978.1|Name=mRNA_Ecto-sp13_S_contig18901.5978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18901:108..2754+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATTGCGCTCCTCCCCCTAGACGTCCTCAAGATCAAGGCGCAGACCAA
CCCGGAGAGCCTGGCCGGCCGTGGGGTGGTGGACATCTTCGCCAAGGAAG
GCAGGGGCCTCTACCGCGGGGCCGGCTGGACCGCCGCGCGTAACGCTCCG
GGATCGTTCGCGCTGTTCGGCGGCGCCTCGGTGATGAAGGAGTACGTGTT
CAAGCTCGAGCGCCCCGGGGACGCGACCCTGTTCCAGACCTTCTGCGCCT
CCATCGCCGGCGCGGTTTCGAGCATCACCGTCGCAGCCCCGCTCGACGTC
ATCAAGGTTCGAGTCCAGAACCGCCCTTTCGATTCGCCCGAGAGCGGGAT
GGCTATCGTGCGCAAGCTCCTGGCGACCGAGGGGCCTGGTGCTTTCTTCA
AGGGATTGACGCCGAAGATCATCGTGGTGGGGCCGAAGCTCATCTTCTCC
TTCACTGTGGCGCAGCGCCTCATCTCTTTCCTGGAGCGCTCGTGGGACCC
CAACAGCGCCCTCAACGTTGCCAAGAGGAAGAGCTCTTCGGCGTGA
back to top