mRNA_Ecto-sp13_S_contig1876.5904.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1876.5904.1
Unique NamemRNA_Ecto-sp13_S_contig1876.5904.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1876.5904.1 vs. uniprot
Match: A0A6H5JFG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG4_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.690e-44
Identity = 94/116 (81.03%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   64 KKKIEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSARQGRSKSRGGVGGGGTRNAPRYPNEIAADRAAAAAAAVG---------AAEVSEDREEGMLGAGASPGGVES 384
            K K+EDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSARQGRSKSRGGVGGGGTRNAPRYPNEIAADRAAA               AAEVSEDRE  M GAGA P GVES
Sbjct:  293 KTKMEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSARQGRSKSRGGVGGGGTRNAPRYPNEIAADRAAAXXXXXXXXXXXXXXXAAEVSEDREGAMPGAGALPEGVES 408
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BLAST of mRNA_Ecto-sp13_S_contig1876.5904.1 vs. uniprot
Match: D7FI24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI24_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 5.400e-33
Identity = 84/118 (71.19%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:   64 KKKIEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSARQGRSKSRGGVGGGG-TRNAPRYPNEIAADRAAAAAAAVGA----------AEVSEDREEGMLGAGASPGGVES 384
            KKK+EDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSS RQGRSKSRGG       RNAPRYPNEIAADRA                   AEVSEDRE  + GAGA P GVES
Sbjct: 1138 KKKMEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSTRQGRSKSRGGAXXXXXARNAPRYPNEIAADRAXXXXXXXXXXXXXXXXXXXAEVSEDREGEIPGAGALPEGVES 1255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1876.5904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFG4_9PHAE2.690e-4481.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI24_ECTSI5.400e-3371.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1876contigEcto-sp13_S_contig1876:3023..3409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.2054448-CDS-Ecto-sp13_S_contig1876:3022..34091681462960.2054448-CDS-Ecto-sp13_S_contig1876:3022..3409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1876 3023..3409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1876.5904.1prot_Ecto-sp13_S_contig1876.5904.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1876 3023..3409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1876.5904.1

>prot_Ecto-sp13_S_contig1876.5904.1 ID=prot_Ecto-sp13_S_contig1876.5904.1|Name=mRNA_Ecto-sp13_S_contig1876.5904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
VFLFHSLHLNSHVTNTNVPRRKKKIEDVRRRENIKSERRRSLLLRQQTDL
FSKQHPFTPTFFSSARQGRSKSRGGVGGGGTRNAPRYPNEIAADRAAAAA
AAVGAAEVSEDREEGMLGAGASPGGVES*
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mRNA from alignment at Ecto-sp13_S_contig1876:3023..3409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1876.5904.1 ID=mRNA_Ecto-sp13_S_contig1876.5904.1|Name=mRNA_Ecto-sp13_S_contig1876.5904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1876:3023..3409+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTTTCTCTTCCACTCGTTGCACCTGAATTCCCACGTAACAAATACAAA
CGTACCCCGGCGGAAGAAGAAAATAGAGGACGTGCGCCGTCGGGAAAACA
TCAAGAGCGAGCGACGTCGGAGCCTCCTGTTACGCCAACAAACGGACCTC
TTCTCGAAGCAGCACCCCTTCACGCCCACGTTTTTTTCCTCCGCAAGACA
AGGCAGGAGCAAAAGTAGGGGCGGCGTCGGCGGTGGCGGGACAAGAAATG
CTCCTCGCTACCCCAACGAAATTGCAGCGGATCGAGCAGCGGCGGCAGCA
GCGGCGGTCGGTGCCGCGGAGGTGTCGGAGGACCGGGAGGAGGGCATGCT
GGGGGCAGGGGCGTCGCCGGGGGGAGTAGAGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1876:3023..3409+

>mRNA_Ecto-sp13_S_contig1876.5904.1 ID=mRNA_Ecto-sp13_S_contig1876.5904.1|Name=mRNA_Ecto-sp13_S_contig1876.5904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1876:3023..3409+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTTTCTCTTCCACTCGTTGCACCTGAATTCCCACGTAACAAATACAAA
CGTACCCCGGCGGAAGAAGAAAATAGAGGACGTGCGCCGTCGGGAAAACA
TCAAGAGCGAGCGACGTCGGAGCCTCCTGTTACGCCAACAAACGGACCTC
TTCTCGAAGCAGCACCCCTTCACGCCCACGTTTTTTTCCTCCGCAAGACA
AGGCAGGAGCAAAAGTAGGGGCGGCGTCGGCGGTGGCGGGACAAGAAATG
CTCCTCGCTACCCCAACGAAATTGCAGCGGATCGAGCAGCGGCGGCAGCA
GCGGCGGTCGGTGCCGCGGAGGTGTCGGAGGACCGGGAGGAGGGCATGCT
GGGGGCAGGGGCGTCGCCGGGGGGAGTAGAGTCGTGA
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