mRNA_Ecto-sp13_S_contig18727.5893.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18727.5893.1
Unique NamemRNA_Ecto-sp13_S_contig18727.5893.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18727.5893.1 vs. uniprot
Match: D7FK94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK94_ECTSI)

HSP 1 Score: 415 bits (1066), Expect = 2.870e-135
Identity = 258/336 (76.79%), Postives = 272/336 (80.95%), Query Frame = 1 
Query:    1 RRHELVAMKREEDSWKTAAMQRARRDLRTASTTCEEYPVFAAGRNPAASTTLLFGSTSLEERTRDRIAEEGPGEEAMRAVGLVRVGEDSRDEGESQSPGRAGEKGRRGDGGGWRLPTRVVEEMRREFDRKMDQESAEVLEQENKALLEARARLAEREGAKTKRELQDLSERLTNDGRDALASLRRDLEAKEEKRLAEERGNLKVALARALQQER----------ERLVTER----KLKVFDARDASGRESSQVAANLWEQAERSTSARRGEAVRLLNEAADRARVKLDELLAKQEEQGLRAIRDRSSAERKAALKRIREEGKRRCLNELKALADGA 966
            RRHELVA+KREEDSWKT+AMQRARRDLRTAS+T EEYPVFAAGRNPAASTTL  GSTSLEERTRDRIAEEGPGEEAMRAVGLVR GEDS                     GGWRLP RVVEEMRREFDRKMDQESAEVLEQENKALLEARARLAEREGA+TKRELQDLSERLTNDGRDALASLRR+LE +EEKRLAEERGNLK ALA  L              + L + R     ++ F     S RESS VAANLW+QAERSTSARR EA+RLL EAADRARVKLDELL +QEEQGLRAIRDRSSAERKAALKRIREEG+RRCL ELKALADGA
Sbjct:  295 RRHELVALKREEDSWKTSAMQRARRDLRTASSTYEEYPVFAAGRNPAASTTLFSGSTSLEERTRDRIAEEGPGEEAMRAVGLVRDGEDSXXXXXXXXXXXXXXXXXXXXXGGWRLPMRVVEEMRREFDRKMDQESAEVLEQENKALLEARARLAEREGARTKRELQDLSERLTNDGRDALASLRRELEVEEEKRLAEERGNLKEALAHDLPSSTPSEPPSNTLYKSLNSNRGERHNIRHFFCCCTSRRESSHVAANLWKQAERSTSARREEALRLLGEAADRARVKLDELLVEQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADGA 630
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BLAST of mRNA_Ecto-sp13_S_contig18727.5893.1 vs. uniprot
Match: A0A6H5KCA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA0_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 1.680e-130
Identity = 226/246 (91.87%), Postives = 232/246 (94.31%), Query Frame = 1 
Query:  229 MRAVGLVRVGEDSRDEGESQSPGRAGEKGRRGDGGGWRLPTRVVEEMRREFDRKMDQESAEVLEQENKALLEARARLAEREGAKTKRELQDLSERLTNDGRDALASLRRDLEAKEEKRLAEERGNLKVALARALQQERERLVTERKLKVFDARDASGRESSQVAANLWEQAERSTSARRGEAVRLLNEAADRARVKLDELLAKQEEQGLRAIRDRSSAERKAALKRIREEGKRRCLNELKALADGA 966
            MRAVGLVR GEDS DEGESQSPGR GE+GRRG GGGWRLPTRVVEEMRREFDRKMDQESAE    ENKALLEARARLAEREGA+TKRELQDLSERLTNDGRDALAS RRDLEA+EEKRLAEERGNLK ALARALQQERERLVTERKLKVFDARDASGRESSQVAANLWEQAERSTSARR E VRLL+EAADRARVKLDELLA+QEEQGLRAIRDRSSAERKAALKRIREEG+RRCL ELKALAD A
Sbjct:    1 MRAVGLVRDGEDSTDEGESQSPGRVGERGRRGGGGGWRLPTRVVEEMRREFDRKMDQESAE----ENKALLEARARLAEREGARTKRELQDLSERLTNDGRDALASFRRDLEAEEEKRLAEERGNLKEALARALQQERERLVTERKLKVFDARDASGRESSQVAANLWEQAERSTSARREEVVRLLDEAADRARVKLDELLAEQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADSA 242
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18727.5893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK94_ECTSI2.870e-13576.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCA0_9PHAE1.680e-13091.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18727contigEcto-sp13_S_contig18727:185..3407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size966
Hectar predicted targeting categoryother localisation
Exons6
Cds size945
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18727.5893.1prot_Ecto-sp13_S_contig18727.5893.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18727 185..3386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462959.417618-CDS-Ecto-sp13_S_contig18727:184..3161681462959.417618-CDS-Ecto-sp13_S_contig18727:184..316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18727 185..316 -
1681462959.42969-CDS-Ecto-sp13_S_contig18727:1014..11501681462959.42969-CDS-Ecto-sp13_S_contig18727:1014..1150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18727 1015..1150 -
1681462959.4380739-CDS-Ecto-sp13_S_contig18727:1737..18131681462959.4380739-CDS-Ecto-sp13_S_contig18727:1737..1813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18727 1738..1813 -
1681462959.4478297-CDS-Ecto-sp13_S_contig18727:1945..20791681462959.4478297-CDS-Ecto-sp13_S_contig18727:1945..2079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18727 1946..2079 -
1681462959.4582396-CDS-Ecto-sp13_S_contig18727:2732..28091681462959.4582396-CDS-Ecto-sp13_S_contig18727:2732..2809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18727 2733..2809 -
1681462959.4664638-CDS-Ecto-sp13_S_contig18727:2996..33861681462959.4664638-CDS-Ecto-sp13_S_contig18727:2996..3386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18727 2997..3386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462959.4750254-UTR-Ecto-sp13_S_contig18727:3386..34071681462959.4750254-UTR-Ecto-sp13_S_contig18727:3386..3407Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18727 3387..3407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18727.5893.1

>prot_Ecto-sp13_S_contig18727.5893.1 ID=prot_Ecto-sp13_S_contig18727.5893.1|Name=mRNA_Ecto-sp13_S_contig18727.5893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=315bp
MKREEDSWKTAAMQRARRDLRTASTTCEEYPVFAAGRNPAASTTLLFGST
SLEERTRDRIAEEGPGEEAMRAVGLVRVGEDSRDEGESQSPGRAGEKGRR
GDGGGWRLPTRVVEEMRREFDRKMDQESAEVLEQENKALLEARARLAERE
GAKTKRELQDLSERLTNDGRDALASLRRDLEAKEEKRLAEERGNLKVALA
RALQQERERLVTERKLKVFDARDASGRESSQVAANLWEQAERSTSARRGE
AVRLLNEAADRARVKLDELLAKQEEQGLRAIRDRSSAERKAALKRIREEG
KRRCLNELKALADGA
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mRNA from alignment at Ecto-sp13_S_contig18727:185..3407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18727.5893.1 ID=mRNA_Ecto-sp13_S_contig18727.5893.1|Name=mRNA_Ecto-sp13_S_contig18727.5893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3223bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18727:185..3407- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGGCACGAGTTGGTGGCTATGAAGCGGGAGGAAGATTCTTGGAAAAC
GGCCGCGATGCAGAGGGCAAGGAGGGACTTGAGAACAGCATCGACTACGT
GCGAAGAGTACCCAGTCTTCGCTGCTGGAAGAAATCCAGCCGCGTCGACA
ACACTGCTTTTCGGCAGCACAAGCTTGGAGGAGCGCACGAGAGATAGGAT
AGCAGAGGAAGGGCCCGGGGAGGAAGCAATGAGGGCGGTTGGACTTGTCA
GAGTCGGCGAAGACTCTAGAGACGAAGGGGAGTCTCAATCGCCGGGGCGA
GCAGGGGAGAAAGGGCGCCGTGGCGATGGTGGTGGGTGGAGGCTGCCCAC
GCGGGTTGTGGAGGAGATGCGTAGGGAGTTCGACCGGAAGATGGACCAAG
AGAGCGCCGAGGTCAGCACCGCAGCTCGGATGGGAAGGAGGATAGAGGAG
TGGGAAGGACTTGTGGAAAGTTGTCTTTGTAGCATTGCCTTATAGCGGTG
TAGAGGTGGAGCCACCATCACCTCATGAACGCACTCTACCCCCTGTACCC
TCGCGTCCTGACTCGTTGGCCCTCTGCCGGATGCTTTTACTTTTCTAGGT
TTTGGAGCAGGAGAATAAGGCGTTGCTGGAAGCACGGGCCAGGCTTGCGG
AGCGGGAAGGTGCCAAGACGAAACGGTAAGCTTGGCGGCGACTTCGTGGA
ACTCTTTCGGTCCGAAGTTGTTGACCAAATCCAGTCACCTGCTGTACCGT
TTTGATTCAGATGCGCCCGTTTCAAAAATCCAATGCAAGCACCCCAAACA
TTAGCATTTTCATGCCTGTTAACATTTCGATACCAGCACCCCGCATGGGA
GAACCAAGAGAACTGACACCCAACGTCACTGTCTGTCCACTCGGGGCAAC
GATGTGTGGTACAGCAATGAAAAACACTAGTGCGATTGTCCCAGTCGGTG
TGGTAGTTTGGTGTGGGCATGGGGACTTAGTTTTCATGAAAGGCGAACGG
TCATTCGTTTTTCCCGTCCGCCGAAGGACCGAACAAGACATAGGTAGAGA
TCAAGAGCCTTGTGGCTAGGTTGGCGGAACTGAGGGATGACCCCTCAAAA
CCTCCCTTGCTGGAACTGGCTGTCCTGGAGTTCTTCATCCCTGTAGGAAT
GTGTTAGAACAGTCGTCAGGGGGTAGCTTGGGTTGGCGTTGTTGTTGGTG
TTGGTAGTGGTAGTGACGGTATGGTGGTTGCAGTGGCGGCGGCATTGTTG
CAGTCGCTACTGGTGCTGTACCTCAGTCACGCGGAACACATGCGCTGGCA
ACTCTCACCAACAGCCATCAACGTACAGGGAGTTGCAAGACCTGAGTGAA
CGACTCACCAACGACGGGCGCGACGCTCTGGCGTCCCTTCGGCGAGATCT
CGAAGCGAAGGAAGAGAAACGTCTGGCGGAAGAGAGAGGAAACCTCAAGG
TGGCATTAGCACGTGAGTCGTTGCGTTGTTAGCAGCATTTTTTAATCCTT
TCACTCTTAAAAAAGAATCCCACTATCTCTTGCCTGGAGCACGACCGTTC
AAGCAACATGGTGGGGTTATTGTTTTCCGTGATGGTGGTGACAGGTGCGC
TGCAGCAGGAGCGGGAGCGGTTGGTGACCGAGAGAAAGCTGAAGGTGTTC
GACGCTCGGGACGCCAGTGGGTGTGTTGAACTACTCGTGTTGGAAATACA
CTTTCCTACCTGACGAAAATCAGCTTTGACTCGGAAAATCACCGTCATTA
AGTTGGAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGACATTTTTTTC
GAGGGTCAAGCCCCCGTTGGCCGAGAAGAAGGCCTTCCCCCCAACACACA
CCGGTGTGATTATTTCGGGTAGAATATATTTTGACTTGAGAAAAGAAACG
GTCCAATACACCAAGAAAAGAGGCAAGCGCGCTCAGGTCCGACCGTAGAG
CGCGGCACACGCCGAGGAACCAAATCATGTTGTTCACCTTTGTCTTTTCG
TTCTATCCCGCATGTACTCGGCGCTTTTTGAAGACAATTCTGACGACTTA
CCTTCGAGCACCCCAAGGGAACCACCATCAAACACCCTCTATAAATCCTC
GAACTCTAACCGTGGTGAGCATCGCAACATTCCGCAATTTTTGTATTGTA
TATCGAGGCGAGAATCGTCGCAGGTGGCGGCGAACCTTTGGGAACAGGCG
GAACGTTCCACATCCGCCAGGAGGGGAGAGGCGGTCCGCCTCCTGAATGA
GGCCGCTGACAGGGCTAGGGTCAAACTTGATGAGCTACTGGCGGTGAGTC
TCGTCTTTTGTACGACCGACAGAGCTGTTCCACATGTTGATCGGCAATAC
GGGATGGATGGGAGAGGGAGAAACCTTGACAACGAAGAAGAAGAAGCAGC
AGAGATAGAGAGTGGGAGGCAGAGAGAGACAGAGACAGAGACAGAGACAG
AGACAGAGACAGAGACAGAGAGAGAGAGATAGAGAGAGAGAGAAAGACCG
AGAGAGAGGGAGGGAAGGAGAGAAAGAGAGAAAGAGCGAAAGAGAGAGAG
ATACGGTATATATATAGAGAGAGAGGAAACAAACGTTCCTCGTGACGGAG
AGAAATGCACCTGACCGTCCGAAATCGCGTATGACGACAAGGAAAAATGG
AAAAAATAGCAGGGACATCAGGCTTGGGCGACCATCAACACTCACTGAAC
GGTGAAGTTTGGCAAGAGCCCAAATGCCAAGAGCCCGGGTGCAACATCGA
GGCTATCCTTCGCGGAAACATACCCCCGACATGAAGGCCGGGATGAGAGA
ACAACATGATTTCATCTCAAAGGGTCCGAAAACGCGAGTGGACAAACGGG
GATGAATGAAAGTGTTTAACACCCGGAAGTGGGGGTGGAAATTTCAATCA
TGACTCCTTCCTTGCTCGTGGTGATTCGTAAAAGTTTCGTCCCCAACGCG
TAGTTTGTTGTCCCTACTACACTGCTGTTTTTCGTCCCCAGAAGCAAGAA
GAACAAGGGTTGCGAGCGATTAGGGACAGGAGTTCAGCGGAGAGGAAGGC
GGCGTTGAAACGAATCAGAGAGGAGGGGAAGCGTCGCTGCCTGAACGAGC
TCAAGGCTCTTGCCGACGGCGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18727:185..3407-

>mRNA_Ecto-sp13_S_contig18727.5893.1 ID=mRNA_Ecto-sp13_S_contig18727.5893.1|Name=mRNA_Ecto-sp13_S_contig18727.5893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18727:185..3407- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCGGGAGGAAGATTCTTGGAAAACGGCCGCGATGCAGAGGGCAAG
GAGGGACTTGAGAACAGCATCGACTACGTGCGAAGAGTACCCAGTCTTCG
CTGCTGGAAGAAATCCAGCCGCGTCGACAACACTGCTTTTCGGCAGCACA
AGCTTGGAGGAGCGCACGAGAGATAGGATAGCAGAGGAAGGGCCCGGGGA
GGAAGCAATGAGGGCGGTTGGACTTGTCAGAGTCGGCGAAGACTCTAGAG
ACGAAGGGGAGTCTCAATCGCCGGGGCGAGCAGGGGAGAAAGGGCGCCGT
GGCGATGGTGGTGGGTGGAGGCTGCCCACGCGGGTTGTGGAGGAGATGCG
TAGGGAGTTCGACCGGAAGATGGACCAAGAGAGCGCCGAGGTTTTGGAGC
AGGAGAATAAGGCGTTGCTGGAAGCACGGGCCAGGCTTGCGGAGCGGGAA
GGTGCCAAGACGAAACGGGAGTTGCAAGACCTGAGTGAACGACTCACCAA
CGACGGGCGCGACGCTCTGGCGTCCCTTCGGCGAGATCTCGAAGCGAAGG
AAGAGAAACGTCTGGCGGAAGAGAGAGGAAACCTCAAGGTGGCATTAGCA
CGTGCGCTGCAGCAGGAGCGGGAGCGGTTGGTGACCGAGAGAAAGCTGAA
GGTGTTCGACGCTCGGGACGCCAGTGGGCGAGAATCGTCGCAGGTGGCGG
CGAACCTTTGGGAACAGGCGGAACGTTCCACATCCGCCAGGAGGGGAGAG
GCGGTCCGCCTCCTGAATGAGGCCGCTGACAGGGCTAGGGTCAAACTTGA
TGAGCTACTGGCGAAGCAAGAAGAACAAGGGTTGCGAGCGATTAGGGACA
GGAGTTCAGCGGAGAGGAAGGCGGCGTTGAAACGAATCAGAGAGGAGGGG
AAGCGTCGCTGCCTGAACGAGCTCAAGGCTCTTGCCGACGGCGCA
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