mRNA_Ecto-sp13_S_contig18697.5882.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18697.5882.1
Unique NamemRNA_Ecto-sp13_S_contig18697.5882.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5L9S2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.870e-21
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = -2 
Query:   52 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERLPSVIG---LVDTMLRPLEDAWSMV 252
            WNREERTV V+G R+  EKAGR IVR+DRLG TFLSHLW+ RKERL   IG      TMLRPLEDAWSMV
Sbjct:  183 WNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERL--AIGDRSCGRTMLRPLEDAWSMV 250
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BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5K7G9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 9.430e-20
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = -2 
Query:   52 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERLPSVIGLVDTMLRPLEDAWSMV 252
            WNREERT+  LG R   EKA   IVR+DRLG TFLSHLW+ RKERL    G V TMLRPLEDAWSMV
Sbjct:  702 WNREERTIAALGHRWWVEKARGDIVRIDRLGKTFLSHLWQSRKERLAIGDGPVGTMLRPLEDAWSMV 768
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BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5JA81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA81_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.040e-19
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = -2 
Query:   52 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERLPSVIGLVDTMLRPLEDAWSMV 252
            WNREERTV VLG R+  EK  R IVR+DRLG TFLSHLW+ RKERL        TML PLEDAWSMV
Sbjct:  413 WNREERTVAVLGHRRWVEKVRRDIVRIDRLGNTFLSHLWQNRKERLAIGDRSWGTMLLPLEDAWSMV 479
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BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.800e-15
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  115 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERL 252
            WNREERTV VLG R+  EKAGR IVR+DRLG TFLSHLW+ RKERL
Sbjct:   96 WNREERTVAVLGHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERL 141
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.860e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  115 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERL 252
            WNREERTV VLG R+  EKAGR IVR+DRLG TFLSHLW+ RKERL
Sbjct:  189 WNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERL 234
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5L729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L729_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.970e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  115 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERL 252
            WNREERTV VLG R+  EKAGR IVR+DRLG TFLSHLW+ RKERL
Sbjct:  244 WNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERL 289
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.570e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  115 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERL 252
            WNREERTV VLG R+  EKAGR IVR+DRLG TFLSHLW+ RKERL
Sbjct:  298 WNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERL 343
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5K863_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K863_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.390e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  115 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERL 252
            WNREERTV VLG R+  EKAGR IVR+DRLG TFLSHLW+ RKERL
Sbjct:  180 WNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERL 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5JLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.430e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  115 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERL 252
            WNREERTV VLG R+  EKAGR IVR+DRLG TFLSHLW+ RKERL
Sbjct:  315 WNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERL 360
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Match: A0A6H5L7J8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.760e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  115 WNREERTVIVLGSRK*FEKAGRYIVRLDRLGTTFLSHLWRGRKERL 252
            WNREERTV VLG R+  EKAGR IVR+DRLG TFLSHLW+ RKERL
Sbjct:  409 WNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERL 454
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18697.5882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9S2_9PHAE3.870e-2171.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7G9_9PHAE9.430e-2070.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JA81_9PHAE7.040e-1968.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJX4_9PHAE3.800e-1578.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCQ0_9PHAE1.860e-1478.26Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L729_9PHAE3.970e-1478.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J590_9PHAE4.570e-1478.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K863_9PHAE5.390e-1478.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM8_9PHAE5.430e-1478.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7J8_9PHAE5.760e-1478.26Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18697contigEcto-sp13_S_contig18697:97..394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size298
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.5690362-UTR-Ecto-sp13_S_contig18697:96..1811681462958.5690362-UTR-Ecto-sp13_S_contig18697:96..181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18697 97..181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.5790591-CDS-Ecto-sp13_S_contig18697:181..3941681462958.5790591-CDS-Ecto-sp13_S_contig18697:181..394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18697 182..394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18697.5882.1prot_Ecto-sp13_S_contig18697.5882.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18697 182..394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18697.5882.1

>prot_Ecto-sp13_S_contig18697.5882.1 ID=prot_Ecto-sp13_S_contig18697.5882.1|Name=mRNA_Ecto-sp13_S_contig18697.5882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MVSTRPITDGNRSFLPRQRWLKNVVPSLSNLTIYLPAFSNHFLLPSTITV
LSSLFHVGVGGRGCTHVHFLP
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mRNA from alignment at Ecto-sp13_S_contig18697:97..394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18697.5882.1 ID=mRNA_Ecto-sp13_S_contig18697.5882.1|Name=mRNA_Ecto-sp13_S_contig18697.5882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=298bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18697:97..394+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGGTGGGGGGGGGGGGCGTACTCGTATGTTTTGCATGCCTGAGCGGTT
AGACCATTGACCACGCGTCCTCGAGAGGACGGAGCATGGTATCCACAAGG
CCGATCACCGATGGCAATCGTTCCTTCCTACCACGCCAAAGGTGGCTCAA
AAACGTCGTCCCTAGTCTGTCTAACCTAACGATATATCTTCCCGCCTTTT
CAAATCACTTCCTACTCCCCAGTACAATTACCGTCCTCTCCTCTCTATTC
CATGTGGGGGTGGGTGGGAGGGGTTGTACTCACGTTCACTTCCTTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18697:97..394+

>mRNA_Ecto-sp13_S_contig18697.5882.1 ID=mRNA_Ecto-sp13_S_contig18697.5882.1|Name=mRNA_Ecto-sp13_S_contig18697.5882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18697:97..394+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATCCACAAGGCCGATCACCGATGGCAATCGTTCCTTCCTACCACG
CCAAAGGTGGCTCAAAAACGTCGTCCCTAGTCTGTCTAACCTAACGATAT
ATCTTCCCGCCTTTTCAAATCACTTCCTACTCCCCAGTACAATTACCGTC
CTCTCCTCTCTATTCCATGTGGGGGTGGGTGGGAGGGGTTGTACTCACGT
TCACTTCCTTCCC
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