mRNA_Ecto-sp13_S_contig18673.5864.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18673.5864.1
Unique NamemRNA_Ecto-sp13_S_contig18673.5864.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: D7FJF1_ECTSI (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF1_ECTSI)

HSP 1 Score: 747 bits (1928), Expect = 5.010e-271
Identity = 376/416 (90.38%), Postives = 387/416 (93.03%), Query Frame = 1
Query:    1 MASDGLYLVLPEKRARLFVGTQKAAQDRSLLRRHRVSRIICVGTPAFHQGDDDEVHGNCSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLGCRLPTTKKVEIRPIASSAGDGGVAPEEPIGTSRESKPSTNTT-VWAAATYRWFLFACGLKLSGGFGGEGGRNGAFQGGEGCGRLYRCKACRAPLFRDSNVLDHLHPIVQAASDSTFASFSKHGDGSSWIKASDAAAIAAAGSTNTVVREAKGRHEPTVRCGGGVTHSINICGKSVVSLAGKGVCTSVFTEALDWFGVAGRGQHSRHFAHSSGKICCPGKKGTVVCGSKLGAWSFDGINCSCGRLVKPAFQFTLSRIERI 1245
            MASDGLYLV+PEK ARLFVGTQKAAQDRSLLRRHRVSRI+CVGTPAFHQGDDDEVH N SKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPT+VAAYLMRLKGLSVAQ+IELVQEAQPTVHINPGF+AQLDLYSDLGCRLP TKKVEI P A SAG  GVAPEEPIG S+ESKPSTNTT VWAAATYRWFLFACGL L GGFGGEGG NGAF GGEGCGRLYRCKACRAPLFRDSNVLDHLHP+VQAASDSTFASFSKHGDGSSWIKA DAA IAAAGST TVVR AKGRH+PTVR GGG THS N CGKSVVS AGKG+CTSVFTEALDW  VA RG+HS HFAHSSGKICCPGKKGTVVCGSKLGAWS DGINCSCGRLVKPAFQFTLSRIER+
Sbjct:    1 MASDGLYLVVPEKGARLFVGTQKAAQDRSLLRRHRVSRIVCVGTPAFHQGDDDEVHSNGSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTVVAAYLMRLKGLSVAQAIELVQEAQPTVHINPGFQAQLDLYSDLGCRLPATKKVEIGPTAPSAGGRGVAPEEPIGISQESKPSTNTTTVWAAATYRWFLFACGLNLGGGFGGEGGHNGAFHGGEGCGRLYRCKACRAPLFRDSNVLDHLHPVVQAASDSTFASFSKHGDGSSWIKARDAADIAAAGSTKTVVRGAKGRHDPTVRRGGGATHSNNNCGKSVVSSAGKGMCTSVFTEALDWVVVADRGRHSGHFAHSSGKICCPGKKGTVVCGSKLGAWSLDGINCSCGRLVKPAFQFTLSRIERV 416          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A1R1XV46_9FUNG (Protein-tyrosine-phosphatase n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XV46_9FUNG)

HSP 1 Score: 112 bits (281), Expect = 4.250e-24
Identity = 96/374 (25.67%), Postives = 164/374 (43.85%), Query Frame = 1
Query:  184 NISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLGCRLPTTKKVEIRPIASSAGDGG-----VAPEEP----IGTSRESKPSTN-TTVWAAATYRWFLFACGLKLSGGFGGEGGRNGAFQGGEGCG------------RLYRCKACRAPLFRDSNVLDHLHPIVQAASDSTFASFSKHGDGSSWIKASDAAAIAAAGSTNTVVREAKGRHEPTVRCGGGVTHSINICGKSVVSLAGKGVCTSVFTEALDWFGVAGRGQHSRHFAHSSGKICCPGKKGTVVCGSKLGAWSFDGINCSCGRLVKPAFQFTLSRIE 1239
            + +Y+ +  +DLP+ NLL   +    FI   + + + +L++C   QSRS TI AAY+M+ + + V +++E +++ +P  H N GF  QL LY DL  ++     +  + + S A   G     +  ++P    +  S   K S N  TV + A     +     +++         +G+ Q G G              ++ RCK CR  LF   N++ H        +DS      + G+  ++IK +              +R+   R +          H+ N          G+ +CTS FTE ++W   AG          +SG+I CP       C SKLG +++ G  CSCG+ + P+F+   S I+
Sbjct:   60 DFNYMVISEMDLPTVNLLQYFNQTYDFISNSVKQNKKILIHCAAGQSRSITIAAAYIMKERNIKVHEALEYIKKKRPQAHPNRGFINQLRLYYDLEFQIDPQNSIYRKFVNSLAQKSGNLHQIIPADDPEKARVSASNAQKSSGNGVTVSSGAQNSSAIDGDSSEVA--------SSGSQQAGSGANMLEAISKVMNQPKMARCKKCRRHLFTADNIIPH----EPKKADSVNRIIDESGN-VTYIKKN--------------MRDFSNRPD----------HNRN-------EKTGRQLCTSAFTEPMEWMQTAGE---------NSGRIVCP------TCQSKLGQYNWSGSQCSCGKWITPSFKILYSHID 374          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A162V4P4_PHYB8 (Protein-tyrosine-phosphatase n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162V4P4_PHYB8)

HSP 1 Score: 109 bits (272), Expect = 4.300e-23
Identity = 101/370 (27.30%), Postives = 159/370 (42.97%), Query Frame = 1
Query:   46 RLFVGTQKAAQDRSLLRRHRVSRIICVG--TPAFHQGDDDEVHGNCSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYS----DLGCRLPTTKKVEIRPIASSAGDGG------VAPEEPIGTSRESKPSTNTTVWAAATYRWFLFACGLKLSGGFGGEGGRNGAFQGGEGCGRLYRCKACRAPLFRDSNVLDHLHPIVQAASDSTFASFSKHGDGSSWIKASDAAAIAAAGSTNTVVREAKGRHEPTVRCGGGVTHSINICGKSVVSLAGKGVCTSVFTEALDWFGVAGRGQHSRHFAHSSGKICCP 1119
            R+F+GT  A Q R++L +H+++ I+ +G  TP +    DD++         YL VDI+DLP  N++   D   +FIE+  ++   +LV+C    SRSPT++AAY MR KG+   +++E+++  +P +  N GF AQL LY     D+  R    ++  +  +A    + G      +AP+ P   S     STNT  + A                                      RC+ CR  L    NV+DH     Q A    FA   +     S I A+++A +         + EA   H+        V  +IN    S+ S      C+S F E ++W        H       +G+I CP
Sbjct:   13 RIFLGTFSAGQSRAVLNQHKITHIVALGDFTPLY----DDKI---------YLNVDIMDLPGANIIQHFDETSNFIEDAYNKNGVILVHCEAGVSRSPTVLAAYFMRSKGIKPTEALEMIKAKRPIISPNNGFLAQLVLYDRLKYDVDTRHTDYRRFLVAAMAEEQKENGYIQHFALAPD-PEYVSGYDSSSTNTKPYTAL-------------------------------------RCRKCRRVLAEADNVIDHERGQGQGA----FAYLKRD----SSINATESAIVG--------LSEAGPTHDT-------VNKAINPLLASLAS--SNSSCSSYFVEPMEWI-------HGLQNGEFNGRIECP 299          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A1X2GIG0_9FUNG (Protein-tyrosine-phosphatase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GIG0_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 4.340e-18
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   19 YLVLPEKRARLFVGTQKAAQDRSLLRRHRVSRIICVGTPAFHQGDDDEVHGNCSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLGCRLPT 486
            ++++P    RL VG   AA++   L  +++S I+ VG    H              ISYL + I DL SEN++   D    FIE+G S+   VLV+C    SRS T+ AAY+MR   +S  +++E+++  +P V  N GF  QL+LY  L   L T
Sbjct:    4 HMIIP----RLHVGDWMAAKNHMELLDNKISHIVAVGDFDLHH-----------PKISYLNIAIEDLASENIIQHFDDSFDFIEQGRSQGTGVLVHCQAGMSRSVTVAAAYMMRKANISYERALEMIRIRRPAVQPNEGFMVQLELYESLNYSLDT 144          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A8D0BQH1_9SAUR (Protein-tyrosine-phosphatase n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BQH1_9SAUR)

HSP 1 Score: 94.7 bits (234), Expect = 4.490e-18
Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 1
Query:  196 LEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLGCRLPTT----KKVEIRPIASSAGDGGVAPEEPIGTSRESKPSTNTTVWAAATYRWFLFACGLKLSGGFGGEGGRNGAFQGGEGCGRLYRCKACRAPLFRDSNVLDH 777
            L V +LD P E+LL  LD+C +FI     R   VLV C    SRS  +V AYL++   L++ ++   VQ  +P V +N GFE QL LY ++GC++  T    K+  ++ I     +    P+E       +   T                                        C  LYRC+ CR PLFR+S++L H
Sbjct:   56 LHVQVLDQPGEDLLSHLDACTAFISRAQERGGVVLVQCQAGVSRSVAVVTAYLVKANSLTLEEAYAFVQAIKPDVKMNEGFEWQLKLYEEMGCKVDVTSSIYKQYRLQAIKEKYTELQDLPQEVFTADPNNLHQTPN--------------------------------------CEALYRCRKCRRPLFRNSSILSH 215          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A5B8MVD3_9CHLO (Protein-tyrosine-phosphatase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVD3_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 1.730e-17
Identity = 60/163 (36.81%), Postives = 85/163 (52.15%), Query Frame = 1
Query:   34 EKRARLFVGTQKAAQDRSLLRRHRVSRIICVGTPAFHQGDDDEVHGNCSKNISYLEVDILDLPSENLLGRLDSCVSFIE--------------EGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLGCRL 480
            E R  L+VG  K  +D         + ++ V  P  H     E H     ++  + V+ILD+P ENLL  L  C+ FI               EG S+   VLV+C   QSRS  IVAAYLMRL+GLS  ++++++++A P  + N GF  QL LY  +GCR+
Sbjct:    2 EVREGLWVGGWKELEDGM----GEWTHVLSVDGP--HVSKAKEFH----PSVKRMTVNILDMPQENLLQHLTRCLGFISRALQASGKADAAPGEGESKASKVLVHCHAGQSRSVAIVAAYLMRLEGLSFEEAMDVIKQANPDANPNEGFREQLKLYEKMGCRI 154          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A1I8Q332_STOCA (Protein-tyrosine-phosphatase n=1 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8Q332_STOCA)

HSP 1 Score: 94.0 bits (232), Expect = 2.020e-17
Identity = 105/435 (24.14%), Postives = 168/435 (38.62%), Query Frame = 1
Query:   10 DGLYLVLPEKRARLFVGTQKAAQDRSLLRRHRVSRIICVGTPAFHQGDDDEVHGNCSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLGCRLPTT----KKVEIRPIASSAGDGGVAPE--------EPIGTSRESKPSTNTTVWAAATYRWFLFACGLKLSGGFGGEGGRNGAFQGGEGCGRLYRCKACRAPLFRDSNVLDHLHPIVQAASDSTFASFSKHGDGSSWIKASDAAAIAAAGSTNTVVREAKGRHEPTVRCGGGVTHSINICGKSV--VSLAGKG--------VCTSV-FTEALDWFGVAGRGQHSRHFAHSS-GKICCPGKKGTVVCGSKLGAWSF-DGINCSCGRLVKPAFQFTLSRIE 1239
            DG  + L E    LF+G   AA     LR + +S I+ + +    Q      H   +  ++   + I D+P E++L  L++CV FI+  +  + NVLV+C +  SRS + V AY+M+   +  + + +LV+  +  V  N GF AQL L+  +GC + T     K   +R          + P         +P  T    +P                                             +YRC+ CR  L   SN+L HL   V            K  DGS+             G+T +   +   +  PT    GG    +    + +  VSL   G         C ++ F E + W          +H A+++ G++ CP       C  KLG +S+ +G  C CG  + PAF    S++E
Sbjct:   39 DGGPISLDEIEPGLFLGNLTAATHMETLRTYNISHILTLDSIPLPQ------HITEASFLTTKYIHIADMPKEDILHHLNTCVDFIQGALLTDHNVLVHCYFGVSRSSSAVIAYVMKKYRMDYSSAYDLVKSKRRFVQPNAGFVAQLKLWHRMGCSIDTQYQKYKTYRLRLAGDQVRKAKILPPNFNDLIKPDPAITQENPEPI--------------------------------------------VYRCRKCRRVLASKSNILQHLPKNVLPE---------KGTDGSN-------------GNTTSANNQTSDQ-TPT----GGSPRLLEQIAEQIRKVSLGSPGEGQKSDITYCQNILFVEPIAWM---------QHIANNTQGRLHCP------KCDQKLGNYSWINGCQCPCGEEISPAFYMIPSKVE 381          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A0G4ECL3_VITBC (Protein-tyrosine-phosphatase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECL3_VITBC)

HSP 1 Score: 92.0 bits (227), Expect = 7.600e-17
Identity = 101/366 (27.60%), Postives = 139/366 (37.98%), Query Frame = 1
Query:  199 EVDILDLPSENLLGRLDSCVSFIEEGMSREE--NVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLGCRL----PTTKKVEIRPIASSAGDGGVAPE---EPIGTSRESKPSTNTTVWAAATYRWFLFACGLKLSGGFGGEGGRNGAFQGG--------EGCGRLYRCKACRAPLFRDSNVLDHLHPIVQAASDSTFASFSKHGDGSSWIKASDAAAIAAAGSTNTVVREAKGRHEPTVRCGGGVTHSINICGKSVVSLAGKGVCTSVFTEALDWFGVAGRGQHSRHFAHSSGKICCPGKKGTVVCGSKLGAWSFDGINCSCGRLVKPAFQFTLSRIERI 1245
            EV ILD    +L+  LD    FIE  M  E   +VL++C    SRS  +  AYLM+   +S   ++  V++A P    N  F  QL LY  +GC      P  ++  +   A   G     P+   +P G   + +      +              L   GG G + G   A  G         E     Y CK CR  LF +SN+L H      A     + SF +        K S A       S + V+      HE                            CTSVF E + W G              +GK+ C  ++    C  KLGAWS+ G+ CSCG    PAFQ  LSR++R+
Sbjct:   58 EVPILDDYESDLIAHLDEACEFIEGVMDGEPTADVLIHCHQGISRSAAVCIAYLMKASKMSFDDALSWVEDAHPPTCPNLNFRKQLRLYERMGCTTAGSSPHHRQYRLWKRACDRGQSLPFPDISDDPEGLLFDDQLDQEEGI--------------LSDEGGSGQDDGDVAASGGSRRPPASSRELAEWQYTCKKCRTRLFYESNLLPH-----HARDGWKWKSFQRK-------KTSSAVCTGTTISASIVLCCQTPGHE----------------------------CTSVFVEPMKWMG---------DLKDQTGKLVCSNQR----CKGKLGAWSWHGLQCSCGGWHTPAFQVHLSRVDRL 356          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A6P3EQ77_OCTDE (dual specificity protein phosphatase 19 n=3 Tax=Hystricomorpha TaxID=33550 RepID=A0A6P3EQ77_OCTDE)

HSP 1 Score: 88.6 bits (218), Expect = 1.440e-16
Identity = 51/163 (31.29%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   49 LFVGTQKAAQDRSLLRRHRVSRIICVGTPAFHQGDDDEVHGNCSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLGCRLPTTKKVEIRPIASSAGDGG 537
            L +G+Q AA D  +L++H+V+ I+ +            V        +Y  + ILDLP  ++L     C  FIE+   ++  VLV+C    SR+P IV  +LM  + +S + +  LV+ A+P+V+ N GF  QL  Y ++       K +E+   +S   DGG
Sbjct:   73 LLLGSQDAAHDLDVLKKHKVTHILNLAYG---------VENAFPSEFTYKSISILDLPETSILSYFPECFEFIEQAKMKDGVVLVHCNAGVSRAPAIVIGFLMNSEQISFSSAFTLVKNARPSVYPNSGFMEQLRTYQEVKEGNKLDKLLELEKDSSQVADGG 226          
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Match: A0A1Y2BU03_9FUNG (Protein-tyrosine-phosphatase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BU03_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 4.010e-16
Identity = 55/157 (35.03%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    1 MASDGLYLVLPEKRARLFVGTQKAAQDRSLLRRHRVSRIICVGTPAFHQGDDDEVHGNCSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQLDLYSDLG 471
            + +DG+YL            +   A+D  LL    +  I+ +G     Q  D        K I Y  + I D  +EN L   D  V+FI E ++  E VLV+C+   SRSPT VAAYLM+ KGL+   +++L++ A+  V  N GF  QLD+Y  +G
Sbjct:    3 LIADGIYL-----------SSCHEAEDFGLLETQSIKSIVSIGHGFTAQFAD--------KGIKYHLIPIEDDANENALDHFDDAVAFITETVAANEKVLVHCMAGVSRSPTFVAAYLMKSKGLTAPDAVDLIRAARDIVGPNEGFLTQLDIYQKMG 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18673.5864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF1_ECTSI5.010e-27190.38Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A1R1XV46_9FUNG4.250e-2425.67Protein-tyrosine-phosphatase n=1 Tax=Smittium culi... [more]
A0A162V4P4_PHYB84.300e-2327.30Protein-tyrosine-phosphatase n=1 Tax=Phycomyces bl... [more]
A0A1X2GIG0_9FUNG4.340e-1835.90Protein-tyrosine-phosphatase n=1 Tax=Hesseltinella... [more]
A0A8D0BQH1_9SAUR4.490e-1830.30Protein-tyrosine-phosphatase n=1 Tax=Salvator meri... [more]
A0A5B8MVD3_9CHLO1.730e-1736.81Protein-tyrosine-phosphatase n=1 Tax=Chloropicon p... [more]
A0A1I8Q332_STOCA2.020e-1724.14Protein-tyrosine-phosphatase n=1 Tax=Stomoxys calc... [more]
A0A0G4ECL3_VITBC7.600e-1727.60Protein-tyrosine-phosphatase n=2 Tax=Vitrella bras... [more]
A0A6P3EQ77_OCTDE1.440e-1631.29dual specificity protein phosphatase 19 n=3 Tax=Hy... [more]
A0A1Y2BU03_9FUNG4.010e-1635.03Protein-tyrosine-phosphatase n=1 Tax=Rhizoclosmati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18673contigEcto-sp13_S_contig18673:1755..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score749.2
Seed ortholog evalue1e-213
Seed eggNOG ortholog2880.D7FJF1
Model size1248
KEGG rclassRC00478
KEGG koko:K00472,ko:K14819
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
Ec32 ortholog descriptionDual specificity phosphatase, subgroup, catalytic domain
Ec32 orthologEc-14_006110.1
EC1.14.11.2,3.1.3.16,3.1.3.48
Cds size1248
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462957.3815117-CDS-Ecto-sp13_S_contig18673:1754..30021681462957.3815117-CDS-Ecto-sp13_S_contig18673:1754..3002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18673 1755..3002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18673.5864.1prot_Ecto-sp13_S_contig18673.5864.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18673 1755..3002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18673.5864.1

>prot_Ecto-sp13_S_contig18673.5864.1 ID=prot_Ecto-sp13_S_contig18673.5864.1|Name=mRNA_Ecto-sp13_S_contig18673.5864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=416bp
MASDGLYLVLPEKRARLFVGTQKAAQDRSLLRRHRVSRIICVGTPAFHQG
DDDEVHGNCSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVL
VNCVYAQSRSPTIVAAYLMRLKGLSVAQSIELVQEAQPTVHINPGFEAQL
DLYSDLGCRLPTTKKVEIRPIASSAGDGGVAPEEPIGTSRESKPSTNTTV
WAAATYRWFLFACGLKLSGGFGGEGGRNGAFQGGEGCGRLYRCKACRAPL
FRDSNVLDHLHPIVQAASDSTFASFSKHGDGSSWIKASDAAAIAAAGSTN
TVVREAKGRHEPTVRCGGGVTHSINICGKSVVSLAGKGVCTSVFTEALDW
FGVAGRGQHSRHFAHSSGKICCPGKKGTVVCGSKLGAWSFDGINCSCGRL
VKPAFQFTLSRIERI*
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mRNA from alignment at Ecto-sp13_S_contig18673:1755..3002-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18673.5864.1 ID=mRNA_Ecto-sp13_S_contig18673.5864.1|Name=mRNA_Ecto-sp13_S_contig18673.5864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18673:1755..3002- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAGCGATGGGCTGTACCTTGTACTACCCGAGAAGCGAGCGCGGCT GTTTGTCGGTACACAGAAAGCAGCTCAAGATCGATCGCTCTTGCGACGCC ACCGAGTGTCAAGGATTATTTGCGTCGGGACACCAGCCTTTCATCAGGGT GATGATGATGAAGTCCACGGGAACTGCAGCAAAAACATTTCCTACCTCGA GGTTGACATCCTAGACCTTCCCTCAGAGAACCTGCTGGGGCGATTAGACA GCTGCGTGTCCTTCATTGAGGAGGGAATGAGCCGAGAAGAGAACGTTTTA GTCAACTGTGTCTACGCGCAGTCGAGGAGTCCTACCATCGTTGCTGCATA CCTCATGAGACTCAAGGGCCTCTCCGTGGCTCAATCCATTGAGCTTGTCC AAGAAGCGCAGCCTACGGTCCACATTAACCCGGGCTTCGAGGCTCAGTTG GACCTGTATAGCGACCTCGGCTGCAGACTACCCACCACAAAAAAGGTCGA GATTAGGCCAATAGCCTCATCAGCAGGAGACGGAGGAGTGGCGCCAGAAG AACCTATTGGGACCAGCCGGGAATCAAAGCCCTCGACGAACACCACGGTT TGGGCGGCCGCAACGTATCGATGGTTCCTGTTCGCTTGCGGCTTAAAACT CAGCGGCGGTTTCGGCGGCGAAGGTGGGCGCAACGGTGCATTCCAAGGAG GGGAGGGTTGCGGCCGCCTGTACCGCTGTAAGGCGTGCCGCGCCCCGCTG TTCCGCGACAGCAACGTCCTCGACCACCTCCATCCCATTGTCCAAGCCGC GAGCGACAGCACCTTCGCTTCCTTCAGCAAGCACGGGGACGGCAGCTCCT GGATAAAGGCGAGCGATGCCGCTGCCATCGCCGCAGCTGGTTCAACAAAT ACGGTGGTCCGCGAAGCGAAGGGCCGGCACGAGCCAACCGTTCGTTGTGG GGGAGGTGTGACCCACAGTATCAATATTTGTGGTAAAAGCGTAGTCTCTT TAGCAGGGAAAGGCGTTTGCACCTCTGTGTTCACGGAAGCCTTGGATTGG TTCGGTGTTGCGGGCAGGGGGCAGCATTCCAGGCATTTTGCTCACAGCTC CGGCAAAATTTGTTGTCCCGGGAAGAAGGGAACAGTAGTGTGCGGTAGCA AGCTCGGGGCGTGGAGCTTTGACGGAATCAACTGTAGCTGCGGAAGGTTG GTCAAACCAGCGTTTCAGTTCACGCTAAGCCGGATTGAGCGCATCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18673:1755..3002-

>mRNA_Ecto-sp13_S_contig18673.5864.1 ID=mRNA_Ecto-sp13_S_contig18673.5864.1|Name=mRNA_Ecto-sp13_S_contig18673.5864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18673:1755..3002- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAGCGATGGGCTGTACCTTGTACTACCCGAGAAGCGAGCGCGGCT
GTTTGTCGGTACACAGAAAGCAGCTCAAGATCGATCGCTCTTGCGACGCC
ACCGAGTGTCAAGGATTATTTGCGTCGGGACACCAGCCTTTCATCAGGGT
GATGATGATGAAGTCCACGGGAACTGCAGCAAAAACATTTCCTACCTCGA
GGTTGACATCCTAGACCTTCCCTCAGAGAACCTGCTGGGGCGATTAGACA
GCTGCGTGTCCTTCATTGAGGAGGGAATGAGCCGAGAAGAGAACGTTTTA
GTCAACTGTGTCTACGCGCAGTCGAGGAGTCCTACCATCGTTGCTGCATA
CCTCATGAGACTCAAGGGCCTCTCCGTGGCTCAATCCATTGAGCTTGTCC
AAGAAGCGCAGCCTACGGTCCACATTAACCCGGGCTTCGAGGCTCAGTTG
GACCTGTATAGCGACCTCGGCTGCAGACTACCCACCACAAAAAAGGTCGA
GATTAGGCCAATAGCCTCATCAGCAGGAGACGGAGGAGTGGCGCCAGAAG
AACCTATTGGGACCAGCCGGGAATCAAAGCCCTCGACGAACACCACGGTT
TGGGCGGCCGCAACGTATCGATGGTTCCTGTTCGCTTGCGGCTTAAAACT
CAGCGGCGGTTTCGGCGGCGAAGGTGGGCGCAACGGTGCATTCCAAGGAG
GGGAGGGTTGCGGCCGCCTGTACCGCTGTAAGGCGTGCCGCGCCCCGCTG
TTCCGCGACAGCAACGTCCTCGACCACCTCCATCCCATTGTCCAAGCCGC
GAGCGACAGCACCTTCGCTTCCTTCAGCAAGCACGGGGACGGCAGCTCCT
GGATAAAGGCGAGCGATGCCGCTGCCATCGCCGCAGCTGGTTCAACAAAT
ACGGTGGTCCGCGAAGCGAAGGGCCGGCACGAGCCAACCGTTCGTTGTGG
GGGAGGTGTGACCCACAGTATCAATATTTGTGGTAAAAGCGTAGTCTCTT
TAGCAGGGAAAGGCGTTTGCACCTCTGTGTTCACGGAAGCCTTGGATTGG
TTCGGTGTTGCGGGCAGGGGGCAGCATTCCAGGCATTTTGCTCACAGCTC
CGGCAAAATTTGTTGTCCCGGGAAGAAGGGAACAGTAGTGTGCGGTAGCA
AGCTCGGGGCGTGGAGCTTTGACGGAATCAACTGTAGCTGCGGAAGGTTG
GTCAAACCAGCGTTTCAGTTCACGCTAAGCCGGATTGAGCGCATCTAA
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