mRNA_Ecto-sp13_S_contig18664.5862.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18664.5862.1
Unique NamemRNA_Ecto-sp13_S_contig18664.5862.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18664.5862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18664contigEcto-sp13_S_contig18664:2415..2728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size314
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462957.0112202-UTR-Ecto-sp13_S_contig18664:2414..24191681462957.0112202-UTR-Ecto-sp13_S_contig18664:2414..2419Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18664 2415..2419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462957.0207906-CDS-Ecto-sp13_S_contig18664:2419..27281681462957.0207906-CDS-Ecto-sp13_S_contig18664:2419..2728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18664 2420..2728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18664.5862.1prot_Ecto-sp13_S_contig18664.5862.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18664 2420..2728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18664.5862.1

>prot_Ecto-sp13_S_contig18664.5862.1 ID=prot_Ecto-sp13_S_contig18664.5862.1|Name=mRNA_Ecto-sp13_S_contig18664.5862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MSQVGKICTGHSTTYLLFAPCAWLPPLSNQIVFFATTNSTAKKAPEISNH
TRKIAIIVFRIDPSPVYLPARFDRRVVVVVRLPSTRGQGTRLKYCHNPFV
VA*
back to top

mRNA from alignment at Ecto-sp13_S_contig18664:2415..2728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18664.5862.1 ID=mRNA_Ecto-sp13_S_contig18664.5862.1|Name=mRNA_Ecto-sp13_S_contig18664.5862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18664:2415..2728+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGTATGTCTCAAGTAGGCAAAATATGTACCGGGCACTCGACCACCTAC
TTGCTGTTTGCTCCGTGCGCCTGGCTTCCTCCCCTTTCAAACCAGATCGT
CTTCTTCGCGACGACCAACTCAACGGCAAAAAAAGCGCCCGAAATATCCA
ACCATACAAGAAAGATTGCAATCATCGTATTTCGAATTGACCCCTCCCCG
GTCTACTTGCCCGCCAGATTCGATCGGCGTGTGGTCGTCGTCGTTAGACT
TCCATCTACTCGGGGACAGGGGACCAGGCTAAAATATTGCCACAATCCTT
TCGTGGTGGCATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18664:2415..2728+

>mRNA_Ecto-sp13_S_contig18664.5862.1 ID=mRNA_Ecto-sp13_S_contig18664.5862.1|Name=mRNA_Ecto-sp13_S_contig18664.5862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18664:2415..2728+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCAAGTAGGCAAAATATGTACCGGGCACTCGACCACCTACTTGCT
GTTTGCTCCGTGCGCCTGGCTTCCTCCCCTTTCAAACCAGATCGTCTTCT
TCGCGACGACCAACTCAACGGCAAAAAAAGCGCCCGAAATATCCAACCAT
ACAAGAAAGATTGCAATCATCGTATTTCGAATTGACCCCTCCCCGGTCTA
CTTGCCCGCCAGATTCGATCGGCGTGTGGTCGTCGTCGTTAGACTTCCAT
CTACTCGGGGACAGGGGACCAGGCTAAAATATTGCCACAATCCTTTCGTG
GTGGCATAG
back to top