mRNA_Ecto-sp13_S_contig18606.5829.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18606.5829.1
Unique NamemRNA_Ecto-sp13_S_contig18606.5829.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: A0A6H5KRG7_9PHAE (GP-PDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRG7_9PHAE)

HSP 1 Score: 823 bits (2125), Expect = 4.770e-297
Identity = 445/476 (93.49%), Postives = 449/476 (94.33%), Query Frame = 1
Query:    1 VEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETGEWIENLTLAQTRERLKHNVSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPELVHESNRRLRPQASQTDAATFPFPQGPDAYSGVDLRGLAAPASSRGKAVESTAAAGXXXDKDSHGNXXXXTASMSGSDGGNRSXXXXXXXXXXXXXXXXNKAEDSTDATVLGGWYSRCDTCKESAEGSDQQRLIAALYGDLAGVRDFAVRTVEDAKVLVKVCSRAVAVESFLAGDAMKGKRATRELAAATALSKEAETLAEQTLRPFVSSAETFKWSVDLISTAQGREFMSHLTKSMKRDEVLPMLPFEKAFVKDLLGMVFS 1428
            VEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEE+GEWIENLTLAQTRERLKHNVSTFEEMLQEK LSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNA+RQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYP LVHESNRRLRPQASQTDAATFPFPQGP AYSGVDLRGLAAPASS GKAV STA        DS GN    TASMSGS      XXXXXXXXXXXXXX  NKAEDSTDATVLGGWYSRCDTC+ESAEGSDQQRLIAALYGDLAGVRDFAVRTVEDAKVLVKVCSRAVAVESFLAGDAMKGKRATRELAAATALSKEAETLAEQTLRPFVSSAETFKWSVDLISTAQGREFMS LT+SMKRDEVLPMLPFEKAFVKDLLGMVFS
Sbjct:  129 VEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEESGEWIENLTLAQTRERLKHNVSTFEEMLQEKVLSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAYRQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPGLVHESNRRLRPQASQTDAATFPFPQGPGAYSGVDLRGLAAPASSEGKAVGSTAL-------DSDGNNSSSTASMSGSXXXXXXXXXXXXXXXXXXXXTTNKAEDSTDATVLGGWYSRCDTCEESAEGSDQQRLIAALYGDLAGVRDFAVRTVEDAKVLVKVCSRAVAVESFLAGDAMKGKRATRELAAATALSKEAETLAEQTLRPFVSSAETFKWSVDLISTAQGREFMSQLTRSMKRDEVLPMLPFEKAFVKDLLGMVFS 597          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: A0A835YQF6_9STRA (PLC-like phosphodiesterase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF6_9STRA)

HSP 1 Score: 259 bits (663), Expect = 2.490e-79
Identity = 124/240 (51.67%), Postives = 168/240 (70.00%), Query Frame = 1
Query:    1 VEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETGEWIENLTLAQTRERLKHNVSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPELVHESNRRLRPQASQTDAATFPFPQG 720
            V+GNT+ SF  AV LGVD+IEFDV+  +DG+ +CHHDPL E +G+W +++T+A+ R  L     T +EML ++ L +SGVHLY D+KHT IVRP + +++ AV R GW A R VVATF+Q++LL++NAFRQAIPEL  LRTA I+D  PL+LARDF+AL    +S G+  V P+ VADC RRG+++W WTVN    ++ L ++G+DG+CTDYPELVH +              T P P G
Sbjct:  111 VKGNTLDSFHRAVELGVDMIEFDVVACADGI-LCHHDPLHEASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELVHAAAAXXXXXXXXXXXXTPPHPAG 349          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: A0A4D9D615_9STRA (GP-PDE domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D615_9STRA)

HSP 1 Score: 162 bits (411), Expect = 5.080e-40
Identity = 93/215 (43.26%), Postives = 129/215 (60.00%), Query Frame = 1
Query:    1 VEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETGEWIENLTLAQTRERLKHNVSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPE-LANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPE 642
            V+GN++ SF  AV LG D+IE DV     G VI HHD  + + G  +ENL LAQ + R+   V     +L +  L  SGV LY+D+K   +V P++  + +A+ + GW   RL+VA+F Q D+++VNA R A P  LA L+T  I+DG P++ A+++ AL V   S G   V P  + D  RRGI V VWTVN+   M R   +GVD L TD+PE
Sbjct:  162 VKGNSLASFQRAVALGADMIELDVCLDRSGEVIVHHDRYLPD-GRLLENLALAQIK-RVDPAVEPLSRVLAD--LRASGVSLYLDIKTDRVVAPLMRLLHEAIAQKGWAPSRLLVASFNQYDMIEVNAHRLAYPATLAALQTCIIVDGVPISFAKEYAALGVHWCSIGDGCVLPSFLEDAHRRGIGVMVWTVNNASAMRRYADLGVDALVTDFPE 372          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: W7T4I9_9STRA (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4I9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.300e-29
Identity = 73/176 (41.48%), Postives = 104/176 (59.09%), Query Frame = 1
Query:   55 VIEFDVLTTSDGVVICHHDPLIEETGEWIENLTLAQTRERLKHNVSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPE-LANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNS 579
            +IE DV     G VI HHD  + + G  +ENL LAQ + R+   V     +L +  L  SGV LY+D+K   +V P++  + +A+ + GW   RL+VA+F Q D+++VNA R A P  LA L+T  I+DG P++ A+++ AL V   S G   V P  + D  RRGI V VWTVN+
Sbjct:    1 MIELDVCLDRSGEVIVHHDRYLPD-GRLLENLALAQIK-RVDPAVEPLARVLAD--LRASGVSLYLDIKTDRVVAPLMRLLHEAIAQKGWAPSRLLVASFNQYDMIEVNAHRLAYPATLAALQTCIIVDGVPISFAKEYAALGVHWCSIGDGCVLPSFLEDAHRRGIGVMVWTVNN 172          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: A0A2E0JIA8_9FLAO (Glycerophosphodiester phosphodiesterase n=2 Tax=Flavobacteriales TaxID=200644 RepID=A0A2E0JIA8_9FLAO)

HSP 1 Score: 102 bits (255), Expect = 3.320e-21
Identity = 66/221 (29.86%), Postives = 119/221 (53.85%), Query Frame = 1
Query:   10 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEE---TGEWIENLTLAQTRERL---KHNVSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPELVHE 654
            NT+PS  +A+ LGVD IE DV     G ++  HD  +E    +  +IE+L L   +  +   K+ + T EE+LQ   L +  V L I++K      P  + + Q  ++ GWT D+ ++++F+  +L ++      IP +A L  + I     L  A+  KA+ ++      +  + + +   Q  G++V+ +T+N L  +ER++K+GVD + TDYPE +++
Sbjct:   38 NTIPSINKAMELGVDGIEIDVFKCKSGELVVFHDERLERLTNSSGFIESLELDSIKNIIVLDKYRIPTLEEVLQ---LIDGQVKLNIELKGYGTASPTNYLINQYNNKGGWTEDKFIISSFKWDELEKIRELNMTIP-IAVLVNSNINPIDALPFAKKIKAIAINPYFKDLNQKNIEKI---QSTGLKVFPYTINELDDIERMIKLGVDAIITDYPERINK 251          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: A0A7V2GE01_9DELT (Glycerophosphodiester phosphodiesterase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V2GE01_9DELT)

HSP 1 Score: 94.0 bits (232), Expect = 4.150e-18
Identity = 64/223 (28.70%), Postives = 107/223 (47.98%), Query Frame = 1
Query:   10 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETG----------EWIENLTLAQTRERLKHNVSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPELV 648
            NT+ +  +A+ +GVD IE DV    D +++ H D L   T           E++ +L  A   +R+     TF+       L      L I++K T    P +  +   +   GW  D  +V++F    L+ V     A+      RT  ++ G PL  AR  + LK D +    D ++   V D   RG+ V+V+T+N+   ++R++ MGVDG+ T++PE+V
Sbjct:   19 NTLIAMEKAISMGVDWIELDVRVVDDELIVIHDDRLERTTNGAGCVHEHSLEYLRSLD-AGKGQRIPLLRETFD-------LINKRAGLNIELKGTGTAGPTVELIRHYIRNRGWKYDEFIVSSFDHHALVTVKQIDPAV------RTGALVVGIPLGYARFAQELKADSVHCSLDFINDAFVHDAHARGLNVYVFTINNREDLDRVVTMGVDGVFTNFPEIV 227          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: A0A7V9Q884_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9Q884_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 3.050e-17
Identity = 75/254 (29.53%), Postives = 112/254 (44.09%), Query Frame = 1
Query:   10 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETGEWIENLTLAQTRERLKHNVSTFEEM----------------------------LQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPELANLRT-----------ACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPELVHE 654
            NTM +F  AV +GVDV+E DV +TSD +++  HDP +E T           T  +   N  TF E+                            L E   +   V   I+ K T+   P L A +  + R     DR++V +FR   L   + FR+A PE+A   +           A  ++G     A+   AL+V   + G   ++P  V    RR ++V  WT+N +  M+RL   GVDG+ TDYP+ + E
Sbjct:   55 NTMHAFTRAVEMGVDVLEMDVHSTSDSMIVVIHDPTVERT-----------TNGQGSVNAMTFSELKTLDAAYGWTPDGGASFPLRGQGITVPSLSEVLTAFPNVRFNIEPKQTQ---PSLAAPLCRMLRENKVTDRVMVGSFRSAVL---DEFRRACPEVATSASTSEVSAFLALSAASLEGNYSGAAQ---ALQVPEYTAGLRVITPGFVEAAHRRDLEVHAWTINEMESMKRLFDFGVDGIITDYPDRLIE 288          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: A0A6I1ZWH5_9BACT (GP-PDE domain-containing protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A6I1ZWH5_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 7.270e-17
Identity = 77/236 (32.63%), Postives = 119/236 (50.42%), Query Frame = 1
Query:    1 VEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETGE---WIENLTLAQTRE-RLKHN---------VSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPELANLRTACIMDGGPLTLARDF--KALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPELVHESNR 663
            V  NT+P+F EA + GVD +E DV+ T+DGV+I  HD  +EE  E   ++  L  A   +    H          +   E++L  K L E  V + I++K      P     + A+ R  +   R +V++F  L LL+V   R+  PELA +         P  L R +    +  D+L       +P+ V    RRG++V VWTVN+   ++ L  +GVDG+ TD+PELV +++R
Sbjct:   78 VPENTLPAFQEAFKAGVDCVELDVMETADGVLIVKHDYHLEEDTEGNGYVWELPYAAIADLNAAHRWGGKFPPTRIPRLEDIL--KVLPED-VFINIELKIRRWFNPGFEEKVIAMIRQYYLVKRTIVSSFSPLSLLKV---RRLEPELA-IGYIWRDTHVPWYLRRPYFVNLVHPDVLHPHVIVTTPETVDKTHRRGMKVNVWTVNNRPMIQYLKSIGVDGIFTDFPELVLQADR 306          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: X0Y7X1_9ZZZZ (GP-PDE domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0Y7X1_9ZZZZ)

HSP 1 Score: 89.0 bits (219), Expect = 1.760e-16
Identity = 73/233 (31.33%), Postives = 118/233 (50.64%), Query Frame = 1
Query:   10 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETGE---WIENLTLAQTRE-RLKHN---------VSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPELANLRTACIMDGGPLTLARDF--KALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPELVHESNR 663
            NT+P+F EA + GVD +E DV+ T+DGV+I  H+  +EE  E   ++  L  A   +    H          +   E++L  K L E  V + I++K      P     + A+ R  +   R +V++F  L LL+V   R+  PELA +         P  L R +    +  D+        +P++V    RRG++V VWTVN+   ++ L  +GVDG+ TD+P+LV +++R
Sbjct:    8 NTLPAFQEAFKAGVDCVELDVMETADGVLIVRHNYHLEEDTEGNGYVWELPYAAIADLNAAHRWGGKFSPTRIPRLEDIL--KVLPED-VFINIELKTRRWFNPGFEEQVIAMIRQHYLVKRTIVSSFNPLSLLKV---RRLEPELA-IGYIWRDTHVPWYLRRPYFVNLVHPDVFHPHVVVTTPEIVDKVHRRGMKVNVWTVNNRPMIQYLESIGVDGIFTDFPQLVLQADR 233          
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Match: A0A7W7CFE3_9PSEU (Glycerophosphoryl diester phosphodiesterase n=3 Tax=Crossiella TaxID=130795 RepID=A0A7W7CFE3_9PSEU)

HSP 1 Score: 89.0 bits (219), Expect = 3.090e-16
Identity = 75/230 (32.61%), Postives = 118/230 (51.30%), Query Frame = 1
Query:   10 NTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETGEWIENL------TLAQTRERLKHNVSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPELANL---RTACIMDGG----PLTLARDFKALKVDI-LSTGK-DHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPELVHE 654
            N++  F  AV+ G   +E DV  TSDGVV+ HHD L++ T + +  +      ++ Q +      ++  E++L+E  L E+  +L +D+K    V PVL  ++Q +  W    DR+ +A+F +  L ++   R A P L      R+A ++  G    PL +    K     +  S GK   V    VA   R GI+V VWT+++   M  LL +GVDGL TD P+L+ E
Sbjct:   36 NSLSGFRRAVKEGFSYLETDVHATSDGVVVVHHDDLLDRTTDGVGAVADQLWASVKQAKVGGVEPIARLEDLLEE--LPEA--YLNVDVKSDSAVAPVLR-LLQRLGAW----DRVCLASFSERRLARLR--RLAGPRLMTALGPRSAGVLWAGGRFRPLAVKSLVKGRLAQVPASAGKLKVVDHRFVAAAHRLGIEVHVWTIDTTEEMTALLDVGVDGLVTDRPDLLRE 254          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18606.5829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRG7_9PHAE4.770e-29793.49GP-PDE domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835YQF6_9STRA2.490e-7951.67PLC-like phosphodiesterase (Fragment) n=1 Tax=Trib... [more]
A0A4D9D615_9STRA5.080e-4043.26GP-PDE domain-containing protein n=1 Tax=Nannochlo... [more]
W7T4I9_9STRA4.300e-2941.48Glycerophosphoryl diester phosphodiesterase n=1 Ta... [more]
A0A2E0JIA8_9FLAO3.320e-2129.86Glycerophosphodiester phosphodiesterase n=2 Tax=Fl... [more]
A0A7V2GE01_9DELT4.150e-1828.70Glycerophosphodiester phosphodiesterase n=1 Tax=De... [more]
A0A7V9Q884_9BACT3.050e-1729.53Glycerophosphodiester phosphodiesterase n=1 Tax=Py... [more]
A0A6I1ZWH5_9BACT7.270e-1732.63GP-PDE domain-containing protein n=1 Tax=Calditric... [more]
X0Y7X1_9ZZZZ1.760e-1631.33GP-PDE domain-containing protein (Fragment) n=1 Ta... [more]
A0A7W7CFE3_9PSEU3.090e-1632.61Glycerophosphoryl diester phosphodiesterase n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18606contigEcto-sp13_S_contig18606:2..2894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score94.0
Seed ortholog evalue2e-16
Seed eggNOG ortholog1286632.P278_32270
Preferred nameugpQ
Model size1431
KEGG rclassRC00017,RC00425
KEGG koko:K01126
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.glycerophosphoryl diester phosphodiesterase
EggNOG OGs1HYHS@117743,4NGNU@976,COG0584@1,COG0584@2
Ec32 ortholog descriptionglcerophosphoryl diester phosphodiesterase
Ec32 orthologEc-23_002410.1
EC3.1.4.46
Cds size1416
COG Functional cat.C
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18606.5829.1prot_Ecto-sp13_S_contig18606.5829.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18606 17..2894 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.6647391-UTR-Ecto-sp13_S_contig18606:1..161681462954.6647391-UTR-Ecto-sp13_S_contig18606:1..16Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18606 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.6800227-CDS-Ecto-sp13_S_contig18606:16..1311681462954.6800227-CDS-Ecto-sp13_S_contig18606:16..131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18606 17..131 +
1681462954.6886566-CDS-Ecto-sp13_S_contig18606:389..6341681462954.6886566-CDS-Ecto-sp13_S_contig18606:389..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18606 390..634 +
1681462954.6991706-CDS-Ecto-sp13_S_contig18606:937..11651681462954.6991706-CDS-Ecto-sp13_S_contig18606:937..1165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18606 938..1165 +
1681462954.7100637-CDS-Ecto-sp13_S_contig18606:1409..19281681462954.7100637-CDS-Ecto-sp13_S_contig18606:1409..1928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18606 1410..1928 +
1681462954.7212064-CDS-Ecto-sp13_S_contig18606:2286..24811681462954.7212064-CDS-Ecto-sp13_S_contig18606:2286..2481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18606 2287..2481 +
1681462954.7305624-CDS-Ecto-sp13_S_contig18606:2780..28941681462954.7305624-CDS-Ecto-sp13_S_contig18606:2780..2894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18606 2781..2894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18606.5829.1

>prot_Ecto-sp13_S_contig18606.5829.1 ID=prot_Ecto-sp13_S_contig18606.5829.1|Name=mRNA_Ecto-sp13_S_contig18606.5829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=472bp
MPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEETGEWIENLTLAQT
RERLKHNVSTFEEMLQEKALSESGVHLYIDMKHTEIVRPVLHAVMQAVDR
WGWTADRLVVATFRQLDLLQVNAFRQAIPELANLRTACIMDGGPLTLARD
FKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGV
DGLCTDYPELVHESNRRLRPQASQTDAATFPFPQGPDAYSGVDLRGLAAP
ASSRGKAVESTAAAGGGGDKDSHGNNSSSTASMSGSDGGNRSNRSTSSVS
SHTGSTTTNKAEDSTDATVLGGWYSRCDTCKESAEGSDQQRLIAALYGDL
AGVRDFAVRTVEDAKVLVKVCSRAVAVESFLAGDAMKGKRATRELAAATA
LSKEAETLAEQTLRPFVSSAETFKWSVDLISTAQGREFMSHLTKSMKRDE
VLPMLPFEKAFVKDLLGMVFS*
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mRNA from alignment at Ecto-sp13_S_contig18606:2..2894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18606.5829.1 ID=mRNA_Ecto-sp13_S_contig18606.5829.1|Name=mRNA_Ecto-sp13_S_contig18606.5829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18606:2..2894+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGGGCAACACGATGCCGTCGTTCCTGGAGGCCGTCAGGCTTGGCGT GGATGTGATCGAGTTCGACGTCCTCACGACCTCGGATGGGGTCGTTATCT GCCATCACGACCCCCTCATCGAAGAGACCGGTAAGGGTTCCCGGCCGGCA CAATCAAGGGACCGGAATGCGTTAATTGCTCGCGTTCGCTTTGTCGGCAG GGCAACCTGCCCTCTCATGTCTTTTCCCACCGTGACGGGTCGGACACGTT TCAATAACCGCTCGCCCCTGCAGCAAACAATCGTTTGTTGTCTAGTCAAG ATATTTAAACCTTCGGAGAGTGCAGCAAAATATTTCACGTGCACCGTCCC GGGTGGGCCCACCTCCCCTACCACCTGATCGCCCGCAGGCGAGTGGATCG AAAACCTGACCCTCGCCCAGACCCGCGAGAGGCTCAAGCACAACGTGTCG ACCTTCGAGGAGATGCTCCAGGAGAAGGCCTTGTCGGAGTCCGGCGTGCA CCTGTACATCGACATGAAGCATACCGAGATCGTGAGGCCGGTTTTGCACG CGGTGATGCAGGCGGTGGACCGGTGGGGGTGGACGGCGGACAGGCTCGTC GTGGCGACCTTCCGCCAGCTTGACCTTTTGCAGGTGAGATAGTCAGCAAG ACTCGAGGTAAAGTTAGAACGGGAGACGGAGACAGAACACCAGTCCATAC CGCACAATTTCACGTTAAGGAGGGCGAAACTGTTTGTGCGCCACCAATCA TGCACACTTGCGAGGTCTGGGGATCTATGGCCCGCTTCTAAGAACATATG CGTGAAGTGTCCTGTCTCCCTCTGTCGATGATCTGGAGGAATTTCGCAGA CGATAACTAGCCTCTTGACAGCCCTGGCTTGCCTCGCTCCGGCACACACA CACACACACGCCACCCTCGGAAATACCGTGTCTCAGGTCAACGCGTTTAG GCAGGCCATTCCCGAGCTGGCGAATCTCCGGACCGCTTGCATTATGGACG GCGGGCCCCTCACCCTGGCCCGCGACTTCAAGGCGCTGAAGGTGGACATC TTGAGCACCGGCAAGGACCATGTTAGCCCCGACCTTGTTGCCGACTGCCA GAGGCGCGGCATCCAAGTCTGGGTGTGGACCGTCAACAGCCTGCACTTCA TGGAGCGCCTGCTGGTGAGTGTGGAAGTGCGTCTCGTTGCAACAGTAGTT GCCTGTTACAGCCTTGTAGGTGTCGAGGGCGCCGTCACACCCGCTGACCG AGCATTCTGCATATTCAAGGGCTGCGTCAGTGCTGTGTGTACCCGAGTGG GCCTGTTCGTCACTCTTGCGGATGGATTTATTTCTGACCTTGTCTCCGCT TCCTTCTGAGCTTGCCTCCGCTTCCTTCCCTCTGTTGTATTTTCGCGTGG AACGGCAGAAAATGGGCGTGGACGGGCTTTGCACCGACTACCCGGAGCTT GTGCACGAGTCCAACAGGAGGCTCCGCCCGCAGGCGAGCCAGACTGACGC GGCTACGTTCCCGTTCCCCCAGGGGCCGGACGCGTACTCGGGCGTCGACC TCCGCGGCCTGGCCGCTCCCGCGTCGTCGCGAGGGAAAGCTGTCGAATCG ACGGCGGCGGCCGGCGGCGGCGGCGACAAGGACAGCCACGGCAACAACTC CTCGTCCACGGCCTCGATGAGCGGTAGTGACGGCGGTAACCGCAGCAATC GCTCCACCAGTAGCGTCAGCAGCCACACGGGCTCAACGACGACCAACAAG GCCGAGGACTCGACCGACGCAACCGTCCTGGGGGGCTGGTACAGCCGCTG CGACACGTGCAAGGAGTCGGCGGAGGGGTCGGACCAGCAGAGGCTCATCG CGGCTCTGTACGGAGACCTTGCCGGCGTGCGAGACTTCGCCGTCCGCACA GTCGAAGACGCGAAAGTACTCGTCAAGGTGTGTACGGGGGTTGTAGCACC GTCTATTATCCTTTTGTTCGCACATGACTTGTTGGGACATGCGTACGTTT TTTTGGTGCAGTCACCGGGCTCAGCGTGGATCTGTCTGCTACTGCTGTGG GTTGTTTCTGTCAAGATACAGTGACGGGTGTGTGGCGAGTACTGCTAGGT CCAACATTTGATACGAGACGCGTCAAATTCGGTCTGGTTCTGTTGCTGTG CCTGATAGTTTCACCATTGAGTAGTTGGGCCGATCGAAGAAGATGCTTCG TTTTTCAACAACTTTCGTGTGATCGATGATCCTAAACGCGCGTTTGTGCG TCGTCCCCCCCCCCCTGCTCTCTGTTACCCCTCAGGTTTGCTCGCGCGCC GTGGCTGTCGAGTCGTTCTTGGCGGGCGACGCCATGAAAGGGAAAAGGGC CACGAGAGAGCTCGCCGCGGCGACGGCATTGAGCAAGGAGGCGGAAACTT TGGCGGAGCAGACTCTCAGGCCGTTCGTGTCCTCCGCTGAGACGTTCAAG TGGTCCGTCGACCTCATCTCCACGGCCCAGGTATTCGCCGTTTGTTTCGA TGGTGGCAGCAAGTAGTGCTTGCTGGAAGACGAGTGTCACAAACTTGGAC CGAATCGGAGTAAATGAATTCATTCCACCTCGCCTGTTTGTCTCTCAGCT TGATTTTCTTCCAGGACGTCAACCGTGTGTTTTTCGGGTTGTTGTCCTGC TGGGCTTTGAGAACACATGCAGTTGCCAGTACGGATCCCGTGTTTTCGGC GTGAACGCGCTCGTGTGACCAATCCTTGTTTTGTTTCCCGTTCCCCCGTT CTCTCTTTGTCTGGTGCGTTTCCGTTCAGGGCCGGGAGTTCATGTCGCAC CTAACTAAAAGCATGAAGAGAGATGAAGTGTTGCCCATGCTGCCCTTCGA GAAGGCCTTCGTTAAGGACCTTCTTGGCATGGTTTTCAGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18606:2..2894+

>mRNA_Ecto-sp13_S_contig18606.5829.1 ID=mRNA_Ecto-sp13_S_contig18606.5829.1|Name=mRNA_Ecto-sp13_S_contig18606.5829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1416bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18606:2..2894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTCGTTCCTGGAGGCCGTCAGGCTTGGCGTGGATGTGATCGAGTT
CGACGTCCTCACGACCTCGGATGGGGTCGTTATCTGCCATCACGACCCCC
TCATCGAAGAGACCGGCGAGTGGATCGAAAACCTGACCCTCGCCCAGACC
CGCGAGAGGCTCAAGCACAACGTGTCGACCTTCGAGGAGATGCTCCAGGA
GAAGGCCTTGTCGGAGTCCGGCGTGCACCTGTACATCGACATGAAGCATA
CCGAGATCGTGAGGCCGGTTTTGCACGCGGTGATGCAGGCGGTGGACCGG
TGGGGGTGGACGGCGGACAGGCTCGTCGTGGCGACCTTCCGCCAGCTTGA
CCTTTTGCAGGTCAACGCGTTTAGGCAGGCCATTCCCGAGCTGGCGAATC
TCCGGACCGCTTGCATTATGGACGGCGGGCCCCTCACCCTGGCCCGCGAC
TTCAAGGCGCTGAAGGTGGACATCTTGAGCACCGGCAAGGACCATGTTAG
CCCCGACCTTGTTGCCGACTGCCAGAGGCGCGGCATCCAAGTCTGGGTGT
GGACCGTCAACAGCCTGCACTTCATGGAGCGCCTGCTGAAAATGGGCGTG
GACGGGCTTTGCACCGACTACCCGGAGCTTGTGCACGAGTCCAACAGGAG
GCTCCGCCCGCAGGCGAGCCAGACTGACGCGGCTACGTTCCCGTTCCCCC
AGGGGCCGGACGCGTACTCGGGCGTCGACCTCCGCGGCCTGGCCGCTCCC
GCGTCGTCGCGAGGGAAAGCTGTCGAATCGACGGCGGCGGCCGGCGGCGG
CGGCGACAAGGACAGCCACGGCAACAACTCCTCGTCCACGGCCTCGATGA
GCGGTAGTGACGGCGGTAACCGCAGCAATCGCTCCACCAGTAGCGTCAGC
AGCCACACGGGCTCAACGACGACCAACAAGGCCGAGGACTCGACCGACGC
AACCGTCCTGGGGGGCTGGTACAGCCGCTGCGACACGTGCAAGGAGTCGG
CGGAGGGGTCGGACCAGCAGAGGCTCATCGCGGCTCTGTACGGAGACCTT
GCCGGCGTGCGAGACTTCGCCGTCCGCACAGTCGAAGACGCGAAAGTACT
CGTCAAGGTTTGCTCGCGCGCCGTGGCTGTCGAGTCGTTCTTGGCGGGCG
ACGCCATGAAAGGGAAAAGGGCCACGAGAGAGCTCGCCGCGGCGACGGCA
TTGAGCAAGGAGGCGGAAACTTTGGCGGAGCAGACTCTCAGGCCGTTCGT
GTCCTCCGCTGAGACGTTCAAGTGGTCCGTCGACCTCATCTCCACGGCCC
AGGGCCGGGAGTTCATGTCGCACCTAACTAAAAGCATGAAGAGAGATGAA
GTGTTGCCCATGCTGCCCTTCGAGAAGGCCTTCGTTAAGGACCTTCTTGG
CATGGTTTTCAGCTAA
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