mRNA_Ecto-sp13_S_contig18522.5783.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18522.5783.1
Unique NamemRNA_Ecto-sp13_S_contig18522.5783.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: D8LRC6_ECTSI (Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC6_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 5.270e-73
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 1
Query:    7 AAPVVKRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPKRRSVMVNNGTPMLFTIMRDRLMQILA 393
            AAPVVKRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVK GGNQVERILSRTVGGRVTLDLDVKKMV+SNPKRRSVMV+NGTPMLFTIMRDRLMQILA
Sbjct:   66 AAPVVKRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKAGGNQVERILSRTVGGRVTLDLDVKKMVQSNPKRRSVMVDNGTPMLFTIMRDRLMQILA 194          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: A0A6H5JBN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN7_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 3.340e-67
Identity = 110/118 (93.22%), Postives = 117/118 (99.15%), Query Frame = 1
Query:    1 MAAAPVVKRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPKRRSVMVNNGTPML 354
            MAAAPVVKRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDA+K GGNQVERILSRTVGGRVTLDLDVKK+++S+PKRRSVMV+NGTPM+
Sbjct:   64 MAAAPVVKRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAIKAGGNQVERILSRTVGGRVTLDLDVKKLIQSDPKRRSVMVDNGTPMV 181          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: A0A7S2B7W2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2B7W2_9EUKA)

HSP 1 Score: 123 bits (309), Expect = 1.560e-32
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   10 APVVKRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPKRRSVMVNNGTPMLFTIMRDRLMQILA 393
            AP ++RVA+VGAG+GGL LA AL T  T V+EV VFE+ D +KP IGGG+QIN GA +LARLGLG+ +K     V RILSR  GG   LD+DV+ +V   P   +++ ++GTP  F+IMRD L ++LA
Sbjct:   40 APPLRRVAVVGAGIGGLALARALYTLDTGVEEVVVFERRDEIKPNIGGGIQINGGAAVLARLGLGEQMKASALPVRRILSRKSGGFELLDIDVESLVLGEP---TLVDDSGTPQAFSIMRDALQRMLA 164          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: R1CJR6_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CJR6_EMIHU)

HSP 1 Score: 121 bits (303), Expect = 6.290e-30
Identity = 66/124 (53.23%), Postives = 88/124 (70.97%), Query Frame = 1
Query:   22 KRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPKRRSVMVNNGTPMLFTIMRDRLMQILA 393
            +RVA+VGAG+GGL LA AL T  T V+EV VF++   +KPG+GGG+QIN GA +LARLGLG+ +K     V RILSR  GG   LD+DV+ +V + P   +++  +GTP  F+IMRD L +ILA
Sbjct:   29 RRVAVVGAGIGGLALARALQTLDTGVEEVAVFDRRSELKPGVGGGIQINGGAAVLARLGLGEQMKASALPVRRILSRKSGGFELLDIDVESLVSAEP---ALVAPDGTPQAFSIMRDALQRILA 149          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: A0A0M0K4R9_9EUKA (FAD_binding_3 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4R9_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 1.620e-27
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   22 KRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPKRRSVMVNNGTPMLFTIMRDRLMQIL 390
            +RVA+VGAG+GGL LA AL    T V+E+ VF++   +KPG GGG+QIN GA +LARLGLG+ VK     V RILSR  GG   LD+DV  +V + P   +++  +GTP  F+IMRD L ++L
Sbjct:    7 RRVAVVGAGIGGLALARALGELDTGVEEIVVFDRRAELKPGTGGGIQINGGAAVLARLGLGEQVKRAALPVRRILSRKSGGFELLDIDVASLVSAEP---ALVAADGTPQAFSIMRDALQRML 126          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: A0A836CJN1_9STRA (Monooxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.930e-24
Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   22 KRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEK-FDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPKRRSVMVNNGTPMLFTIMRDRLMQIL 390
            +R+AIVGAG GGLTLANAL    T VDEV+VFE+   +++PG GGG+QINSGA IL  LG GD +     ++ R+L+R   GRV LDLDV +  E   +R S          + IMRDRL Q+L
Sbjct:   29 RRIAIVGAGAGGLTLANALRKLDTGVDEVEVFERSVSNLQPGTGGGIQINSGASILRLLGFGDELDASAQRITRVLTRAASGRVLLDLDVLEAAER--RRNSGQFAASDLKFYAIMRDRLQQML 150          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: A0A7S2RL63_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL63_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.050e-18
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1
Query:   25 RVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSR----TVGG------RVTLDLDVKKMVES--NPKRRSVMVNNGTPMLFTIMRDRLMQILA 393
            RV ++G G+GGL+LANAL    +A D V VF+K   ++PG+GGGVQ+  GA +LARLG G+ +   G+ + R+L+R     VGG      +  LDLDV+  +    + +   ++ + G  M FTIMRD L+++LA
Sbjct:    9 RVGVIGGGIGGLSLANALIQQDSAFD-VTVFDKAAVLRPGLGGGVQLTGGAAVLARLGFGEELVAAGHPLRRVLTRKVPPAVGGAGAVEPKQLLDLDVRSALADLEDARETGLLQDTGDVMAFTIMRDELLRMLA 142          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: A0A8J5XJX9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJX9_DIALT)

HSP 1 Score: 85.9 bits (211), Expect = 4.640e-17
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   25 RVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPK--RRSVMVNNGTPMLFTIMRDRLMQILA 393
            RV I+GAG  GL  A A+     A  E+ V +K D ++P +GGGVQ+NSGA +LARLGLG AVK  G  + R+ +RTV     LDLD+   +  +P+     ++  +G  +  T+MRD L  +LA
Sbjct:   17 RVGIIGAGPAGLAQAIAIRRLVGADVELVVIDKSDQLRPALGGGVQLNSGAAVLARLGLGAAVKRVGQPISRVHARTVDHTTLLDLDLAGAIRQHPRAAESGIVDRDGDVLAVTMMRDALQAMLA 141          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: A0A8J2SB69_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB69_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.900e-17
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   22 KRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARL--GLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPK--RRSVMVNNGTPMLFTIMRDRL 378
            + + IVGAG  GLTLA AL      V  V +F++ DS +P +GGGVQ+NSGA +LARL   LG AV   G  V R+ SRT GG   LDLD+   +  N +  +R ++  +G    +TIMRD L
Sbjct:   24 QTIGIVGAGPAGLTLAVALNRALPDV-AVTIFDRSDSCRPALGGGVQLNSGAAVLARLDPALGAAVAALGQPVRRVRSRTAGGDALLDLDLAAAIRGNARARKRGLVDADGGVRAYTIMRDAL 145          
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Match: A0A7S1UMX4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UMX4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.480e-14
Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = 1
Query:   22 KRVAIVGAGVGGLTLANALCT---GSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMVESNPKRRSVMVNNGT---PMLFTIMRDRLMQIL 390
            +RVA+VGAG GGL LA AL         V++V VFE+   ++PG+GGG+Q++ GA +LA LGL D +K   N +E + +RTV     L LDV   +       + +V        + + +MRD L ++L
Sbjct:    8 QRVAVVGAGPGGLALARALEALGGAGAGVEDVTVFERRAGLEPGLGGGLQLSGGAAVLAELGLLDELKAIANPLEGVRARTVERATLLTLDVPAAIRRRRDAAAALVKGADGDDTLTYAVMRDALQRML 136          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18522.5783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRC6_ECTSI5.270e-7397.67Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JBN7_9PHAE3.340e-6793.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B7W2_9EUKA1.560e-3253.91Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
R1CJR6_EMIHU6.290e-3053.23Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A0M0K4R9_9EUKA1.620e-2751.22FAD_binding_3 domain-containing protein n=1 Tax=Ch... [more]
A0A836CJN1_9STRA6.930e-2450.81Monooxygenase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2RL63_9STRA1.050e-1841.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5XJX9_DIALT4.640e-1742.40Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J2SB69_9STRA8.900e-1745.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1UMX4_9STRA6.480e-1437.98Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18522contigEcto-sp13_S_contig18522:2385..3469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score236.9
Seed ortholog evalue5.4e-60
Seed eggNOG ortholog2880.D8LRC6
Model size393
KEGG rclassRC00389
KEGG koko:K00480
KEGG ReactionR00818,R05632,R06915,R06936,R06939
KEGG Pathwayko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
Ec32 ortholog descriptionMonooxygenase
Ec32 orthologEc-06_003030.1
EC1.14.13.1
Cds size393
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462951.185375-CDS-Ecto-sp13_S_contig18522:2384..26001681462951.185375-CDS-Ecto-sp13_S_contig18522:2384..2600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18522 2385..2600 +
1681462951.1993682-CDS-Ecto-sp13_S_contig18522:2854..29891681462951.1993682-CDS-Ecto-sp13_S_contig18522:2854..2989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18522 2855..2989 +
1681462951.2090552-CDS-Ecto-sp13_S_contig18522:3427..34691681462951.2090552-CDS-Ecto-sp13_S_contig18522:3427..3469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18522 3428..3469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18522.5783.1prot_Ecto-sp13_S_contig18522.5783.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18522 2385..3469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18522.5783.1

>prot_Ecto-sp13_S_contig18522.5783.1 ID=prot_Ecto-sp13_S_contig18522.5783.1|Name=mRNA_Ecto-sp13_S_contig18522.5783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MAAAPVVKRVAIVGAGVGGLTLANALCTGSTAVDEVKVFEKFDSVKPGIG
GGVQINSGAVILARLGLGDAVKTGGNQVERILSRTVGGRVTLDLDVKKMV
ESNPKRRSVMVNNGTPMLFTIMRDRLMQILA
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mRNA from alignment at Ecto-sp13_S_contig18522:2385..3469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18522.5783.1 ID=mRNA_Ecto-sp13_S_contig18522.5783.1|Name=mRNA_Ecto-sp13_S_contig18522.5783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18522:2385..3469+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCCGCGCCTGTGGTAAAGCGTGTCGCAATCGTGGGGGCCGGGGT CGGGGGCCTGACGCTCGCGAACGCGCTGTGCACGGGAAGCACGGCCGTCG ACGAGGTGAAGGTTTTCGAAAAGTTCGACTCCGTCAAACCTGGGATCGGG GGCGGCGTCCAGATCAACAGCGGCGCGGTGATACTGGCACGGCTTGGACT TGGAGACGCCGTCAAGGTGATGATGCCAGGGGTTGAAACCATGCACCGCC CGGGAGAAAGCGAGTCGGTTGTCGCGCACGGAGCGGCTGCGCAAAGTTTA CCAACATGATGGATTCGGTCAGCATATGTATGACGACATGCACCCTACCG CTGTTGCAATCATACTAACGGTGTCCGTTAGCCATGGTACACGTAACCTG GTGTAAGGCACACGGGCGTATGCAGTCCTTCTTCTTCCACCGACTCACCG GCATGTGCTGCTTGTTGTAGACTGGTGGCAACCAGGTGGAGCGTATCCTA AGCCGAACCGTTGGGGGGCGCGTGACCCTTGACCTGGACGTGAAGAAGAT GGTCGAATCCAATCCTAAGCGGAGGTCGGTCATGGTGAACAACGGCACGC CCATGGTGAGAGAAAGAAAGAGAGAGGGAGGGAGGGAAGGGGGGGGCGAG AGAGAGAGAAACTGAACAAAGCGAGAGGCACGGTGAGTATTTTTGCACAA ACTTTGCAGTAGATGTAATGGGCACACAGAACAAGTGTGGTGTGGATATG TTTGTGAACGAAACCGCTACGTTGTACCCGCAACACCTTTCGCGCGCCCG TCCACCAACTTTCAATGGGCCATAACCATGATTTCTGGACCCCGCGCCCG CGGGTTTGCACCCGACTTCATCCTTCACGATACACCACCATAGCAACAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG GAGAGGAAGAGAGTCTGTTCACAGCAGTTTCATGGCTACACCCACAAGCA ACCCACCATGCCTACCCCCCCGACCCCCGTGCCCCGGTGCCAGCTGTTCA CCATCATGCGCGACCGCCTCATGCAAATCCTGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18522:2385..3469+

>mRNA_Ecto-sp13_S_contig18522.5783.1 ID=mRNA_Ecto-sp13_S_contig18522.5783.1|Name=mRNA_Ecto-sp13_S_contig18522.5783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18522:2385..3469+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCCGCGCCTGTGGTAAAGCGTGTCGCAATCGTGGGGGCCGGGGT
CGGGGGCCTGACGCTCGCGAACGCGCTGTGCACGGGAAGCACGGCCGTCG
ACGAGGTGAAGGTTTTCGAAAAGTTCGACTCCGTCAAACCTGGGATCGGG
GGCGGCGTCCAGATCAACAGCGGCGCGGTGATACTGGCACGGCTTGGACT
TGGAGACGCCGTCAAGACTGGTGGCAACCAGGTGGAGCGTATCCTAAGCC
GAACCGTTGGGGGGCGCGTGACCCTTGACCTGGACGTGAAGAAGATGGTC
GAATCCAATCCTAAGCGGAGGTCGGTCATGGTGAACAACGGCACGCCCAT
GCTGTTCACCATCATGCGCGACCGCCTCATGCAAATCCTGGCC
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