mRNA_Ecto-sp13_S_contig18496.5772.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18496.5772.1
Unique NamemRNA_Ecto-sp13_S_contig18496.5772.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: D8LKJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ8_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.900e-40
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 1
Query:    4 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEVR 195
            SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE R
Sbjct:  253 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEERR 316          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A6H5LH86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH86_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.830e-39
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1
Query:    4 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 189
            SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE
Sbjct:  193 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 254          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A7S0T873_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T873_9RHOD)

HSP 1 Score: 70.5 bits (171), Expect = 5.990e-13
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 SSIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEVRA 198
            S +   + P Y+VSRH  NWGF+++SCW V TS+EMPPR G   D+ L D+ L+VT++ Q  E  A
Sbjct:   85 SFVRVNQFPAYVVSRHERNWGFIMQSCWVVLTSFEMPPRGG---DELLEDEALSVTVEYQASEAMA 147          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A0M0J8D1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8D1_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 9.460e-13
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    7 IGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEVRA 198
            + GR+VPTY VSRH SNWGFL++SCW +YTS+ MP R     D SL D+ L +T++ Q  E RA
Sbjct:  193 VDGRKVPTYHVSRH-SNWGFLMQSCWVLYTSFPMPVRG---TDPSLDDEALEITIERQSREARA 252          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A812PGR1_9DINO (Kif11-b protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PGR1_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 1.750e-12
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 SSIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEVRA 198
            + + GREVPTY V R++ NWG+ +ESCW V++SW MP ++ P+  + L D++L V+ D Q ++  A
Sbjct:  182 AKVMGREVPTYCVRRNKHNWGWTMESCWVVWSSWPMPRKDSPEA-ELLEDERLPVSFDVQEDQAMA 246          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A1Q9F4B6_SYMMI (Kinesin-like protein KIF11-B n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F4B6_SYMMI)

HSP 1 Score: 70.1 bits (170), Expect = 1.780e-12
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 SSIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEVRA 198
            + + GREVPTY V R++ NWG+ +ESCW V++SW MP ++ P+  + L D++L V+ D Q ++  A
Sbjct: 1213 AKVMGREVPTYCVRRNKHNWGWTMESCWVVWSSWPMPRKDSPEA-ELLEDERLPVSFDVQEDQAMA 1277          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A7S0DF25_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DF25_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.560e-11
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   25 PTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEV 192
            P+YI SRH  NWGF+++SCW ++TS+ MP    P  D  L+D KL V +DDQ EEV
Sbjct:  182 PSYITSRHPRNWGFIMQSCWVLWTSFPMP---APGHDDLLVDQKLEVKVDDQMEEV 234          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A7S0E3L2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E3L2_9CRYP)

HSP 1 Score: 66.2 bits (160), Expect = 3.590e-11
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    4 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPP-REGPDCDQSLLDDKLTVTMDDQWEEV 192
            S+ GR+VPTY+VSRH  + GFL++SCW V +S+ +PP RE PD    + D+ L+VT++ Q  EV
Sbjct:  225 SVEGRDVPTYVVSRHPKHRGFLMQSCWAVMSSFPLPPPREDPD----MEDEALSVTLECQQTEV 284          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A7S4DSF9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSF9_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 1.250e-10
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   25 PTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEV 192
            P+Y++SRH  NWGFL++SCW ++TS+ MP    P  D+ L D  L V +DDQ EEV
Sbjct:  184 PSYVISRHSRNWGFLMQSCWVLWTSFPMP---APGIDKFLDDGHLEVRVDDQIEEV 236          
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Match: A0A7S3JQG3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQG3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.110e-9
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    7 IGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEVRA 198
            + G++VPTYI+SRH  + GF+++SCW +YT++ MPP+     D  L DD L V   DQ  E  A
Sbjct:  202 VDGQDVPTYIISRHPKHKGFIMQSCWVLYTAFPMPPKG---TDPYLEDDALQVGWVDQAREALA 262          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18496.5772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LKJ8_ECTSI5.900e-4098.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LH86_9PHAE4.830e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0T873_9RHOD5.990e-1348.48Hypothetical protein n=2 Tax=Erythrolobus madagasc... [more]
A0A0M0J8D1_9EUKA9.460e-1354.69Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A812PGR1_9DINO1.750e-1243.94Kif11-b protein n=1 Tax=Symbiodinium sp. CCMP2592 ... [more]
A0A1Q9F4B6_SYMMI1.780e-1243.94Kinesin-like protein KIF11-B n=1 Tax=Symbiodinium ... [more]
A0A7S0DF25_9EUKA1.560e-1153.57Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0E3L2_9CRYP3.590e-1150.00Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4DSF9_9EUKA1.250e-1051.79Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S3JQG3_9STRA1.110e-945.31Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18496contigEcto-sp13_S_contig18496:2600..2797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.9221056-CDS-Ecto-sp13_S_contig18496:2599..27971681462949.9221056-CDS-Ecto-sp13_S_contig18496:2599..2797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18496 2600..2797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18496.5772.1prot_Ecto-sp13_S_contig18496.5772.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18496 2600..2797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18496.5772.1

>prot_Ecto-sp13_S_contig18496.5772.1 ID=prot_Ecto-sp13_S_contig18496.5772.1|Name=mRNA_Ecto-sp13_S_contig18496.5772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
SSIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLD
DKLTVTMDDQWEEVRA
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mRNA from alignment at Ecto-sp13_S_contig18496:2600..2797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18496.5772.1 ID=mRNA_Ecto-sp13_S_contig18496.5772.1|Name=mRNA_Ecto-sp13_S_contig18496.5772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18496:2600..2797+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGCATTGGAGGGCGGGAAGTGCCGACGTACATCGTGTCTCGCCACCG GTCTAACTGGGGATTCCTGCTGGAGAGCTGCTGGACGGTGTACACGAGCT GGGAGATGCCCCCCCGCGAAGGGCCCGACTGCGACCAGTCGCTGTTGGAC GACAAGCTCACGGTCACCATGGACGATCAGTGGGAAGAGGTGCGTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18496:2600..2797+

>mRNA_Ecto-sp13_S_contig18496.5772.1 ID=mRNA_Ecto-sp13_S_contig18496.5772.1|Name=mRNA_Ecto-sp13_S_contig18496.5772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18496:2600..2797+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGCATTGGAGGGCGGGAAGTGCCGACGTACATCGTGTCTCGCCACCG
GTCTAACTGGGGATTCCTGCTGGAGAGCTGCTGGACGGTGTACACGAGCT
GGGAGATGCCCCCCCGCGAAGGGCCCGACTGCGACCAGTCGCTGTTGGAC
GACAAGCTCACGGTCACCATGGACGATCAGTGGGAAGAGGTGCGTGCG
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