mRNA_Ecto-sp13_S_contig1849.5770.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1849.5770.1
Unique NamemRNA_Ecto-sp13_S_contig1849.5770.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: D7G8A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A1_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 2.530e-148
Identity = 219/225 (97.33%), Postives = 220/225 (97.78%), Query Frame = 2 
Query:  245 MPSQRTLGIFLQEAFGSFALLMMVFPFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGSTLALILIVYVAATQIGLPGQRLVIATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKSVTMDQQWFLVYWVAPCAAAVAGTLLWKVLEPKPKAKTD 919
            M SQRTLGIFLQE FGSFALLMMVFPFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWND+SSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGST ALILIVYVAATQIGLPGQR VIATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKSVTMDQQWFLVYWVAPCAAAVAGTLLWK LEPKPKAKTD
Sbjct:    1 MSSQRTLGIFLQETFGSFALLMMVFPFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDQSSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGSTFALILIVYVAATQIGLPGQRPVIATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKSVTMDQQWFLVYWVAPCAAAVAGTLLWKALEPKPKAKTD 225
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: A0A835Z8P0_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8P0_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.380e-74
Identity = 124/217 (57.14%), Postives = 154/217 (70.97%), Query Frame = 2 
Query:  251 SQRTLGIFLQEAFGSFALLMMVFPFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGSTLALILIVYVAATQIGLPGQRLVIATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKSVTMDQQWFLVYWVAPCAAAVAGTLLWKVLEPK 901
            S + +G+FLQE F SF +L+++FPF SFLGDTW  W  HFF VM+ D+  GG+QVNPA+S+ T  YGWN  +S  VRI GQ+VGG  AFP++A++LP Y    MGGP L    S   G AWEFG T AL+++VYVAATQIGLP QR +IA GIR LI+     GGKTGPAMNPMIA +WA Y    +++   FLVYWV+  A A+A TLLWK +EPK
Sbjct:    2 SAKMVGVFLQECFASFLMLVLLFPFGSFLGDTWMGWTAHFFCVMLHDWITGGSQVNPAVSIATTLYGWNTPASAAVRIAGQLVGGLAAFPVVARVLPPYV--KMGGPMLNT-TSVADGCAWEFGLTFALLILVYVAATQIGLPAQRPIIAGGIRTLIYY----GGKTGPAMNPMIALSWAYYAAPASINMDHFLVYWVSSTAGAIAATLLWKAVEPK 211
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: K8YV92_NANGC (Aquaporin sip1-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV92_NANGC)

HSP 1 Score: 178 bits (451), Expect = 5.550e-48
Identity = 108/234 (46.15%), Postives = 142/234 (60.68%), Query Frame = 2 
Query:  242 TMPSQRTL-GIFLQEAFGSFALLMMVFPFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGSTLALILIVYVAATQIGLPGQRLVIATGIRALIHLSAVKGGK-TGPAMNPMIATAWAVY-DKSVTMDQQWFLVYWVAPCAAAVAGTLLWKV-----LEPKPKAKTD 919
            T+ S R L G  +QE FG+  + ++++PF   LGDTW+AW+ HFF VM+ D  +GG+QVNP++SV  F +G       +VRI+ Q+  G  A+P++ KL PSY    +GGP L  G ST  G   EF  T AL+ ++Y+A T IG PGQR +IA GIR LI    V G   TGPAMNPMIA  WAV  D   T D   +LVYW+AP   AV  T+L+ V     L+ + K K D
Sbjct:    5 TVESPRQLVGAAIQEFFGALLMFLVLWPFVGVLGDTWTAWVAHFFFVMLCDIVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGVVAYPLLQKLSPSYV--GVGGPCLQDGVSTTTGALAEFTLTFALLTLIYLAITIIGAPGQRPIIAAGIRCLI----VAGTPYTGPAMNPMIAFGWAVQSDAYKTFDH--YLVYWIAPTVGAVLATVLFAVFQASFLDERKKNKAD 230
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: A0A7S3XRL2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL2_HETAK)

HSP 1 Score: 114 bits (284), Expect = 2.180e-25
Identity = 66/165 (40.00%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  308 MMVF-PFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGSTLALILIVYVAATQIGLPGQRLVIATGIRALIHLSAVKGG-KTGPAMNPMIATAWAVY 796
            MM+F P  +FLGD+W+AWI HFF V++ D    G+QVNPA+SV  + + W   + L  R++GQ +     FP++    PS+   S  GP +A G +  + +  EF  T+ L+L++      I  P  R  +  GIRAL+    V G  +TGP MNPMIA  WA Y
Sbjct:    1 MMIFTPLCTFLGDSWNAWIMHFFLVILADVITVGSQVNPAVSVAIYLHDWIPFNGLCARLIGQGLAACIVFPMLGVFSPSHVPFS--GPEIAEGLAIREAITTEFLVTMGLMLVILACTDFIKPPAHRPFVGIGIRALV----VAGQHRTGPGMNPMIALGWAWY 159
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: A0A6U3A8R8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3A8R8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.660e-20
Identity = 68/215 (31.63%), Postives = 104/215 (48.37%), Query Frame = 2 
Query:  281 EAFGSFALLMMVFPFNSFLG--DTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAW--EFGSTLALILIVYVAATQIGLPGQRLVI-----ATGIRALIHLSAVKGGKTGPAMNPMIATAWAVY---DKSVTMDQQWFLVYWVAPCAAAVAGTLLWKV 889
            E  G+  +++  F    ++G  D   AW+ H   V+  DY  GG  VNPA+++  +  G    +   VR+ GQM GG  AFP+   +  +      GGP            A+  EFG+T  L+ +VY+   +I       +I     A  +RALI          GPA+NPM+AT WAV+   D S+      + VYW +PC AAVA ++++ +
Sbjct:   45 EFIGTLLMVVCTFSAGKWIGQDDMNIAWLSHAAGVVAADYFGGGQHVNPAVTMSMWALGKCSYTESYVRVSGQMAGGLVAFPLFHAVADALQMPPFGGPEFNTEDEDHSREAFLSEFGATFLLLWVVYLVNWEINFGTYHYLIKQTLTAAAVRALIEFFPT----AGPAINPMLATTWAVWGSGDMSMPSHFMHYFVYWASPCLAAVAASIIYVI 255
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: A0A7R9WQP2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQP2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.870e-20
Identity = 68/237 (28.69%), Postives = 112/237 (47.26%), Query Frame = 2 
Query:  218 VLFATAATTMPSQRTLGIFLQEAFGSFALLMMVFPFNSFLG--DTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTG-QGMAWEFGSTLALILIVYVAATQIGLPGQRLVI-----ATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKS----VTMDQQWFLVYWVAPCAAAVAGTLLWKVL 892
            ++ + AA  +   + + ++  E  GS  ++   F    ++G  D + AW  H   V+  DY  GG QVNPA++   +  G    +   VR+ GQM GG  +FP+   +  S+  +  GGP  ++      +    EF ST  L+  +Y+   ++       +I     A  IR LI +        GPAMNPM+ATAW  +       +  D Q + VYWVAP  AA+  ++ + ++
Sbjct:   24 IVLSVAAAFIGEGKHIKVYFDEFVGSILMIAFTFSAGKWIGQDDMYVAWGFHAVGVIAADYFGGGQQVNPAVTASMWALGECSYTEAFVRVAGQMGGGLVSFPLFQAISESFEMTPFGGPEFSSTRDEPVEATLSEFFSTYILLWAIYILNWRMHFGKHHYLIKQFLTAVAIRVLIEVYPT----AGPAMNPMLATAWDTFGVGNKYEMPSDHQHYFVYWVAPVVAAILASISYAIV 256
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: A0A7S1VVQ9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVQ9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.780e-19
Identity = 73/230 (31.74%), Postives = 112/230 (48.70%), Query Frame = 2 
Query:  266 GIFLQEAFGSF--ALLMMVFPFNS--FLG--DTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTG---QGMAWEFGSTLALILIVYVAATQIGLPG-----QRLVIATGIRALIHLSAVKGGKTGPAMNPMIATAWAVY---DKSVTMDQQWFLVYWVAPCAAAVAGTLLWKVLEPKP 904
            G FL+E    F  +LLM+ F F++  ++G      AW+ HF  V+  DY  GG  VNPA+++  +  G    +   VR+  Q+ GG  AFPI   +  +      GGP            +    EF +T  L++++Y+    +         ++ + A GIRALI +        GPAMNPM+ATAWA +   +     D   ++VYW+AP  AAV  +L W + +  P
Sbjct:   48 GAFLKEFRHEFVGSLLMIAFTFSAGKWIGKESVNVAWVSHFLGVIAADYFGGGPHVNPAVTLSMWSLGKCSYTEGYVRVAAQLGGGLVAFPIFHAISVALDWEPFGGPEFNMDDDEEHAVEAFMSEFCATFLLMILIYLVNWVLNFGTFHYWIKQSLTALGIRALIEIFPT----AGPAMNPMLATAWATFGTGNSQFPEDMDHYIVYWLAPGLAAVLASLCWALYDGGP 273
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: A0A7S3LB05_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LB05_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.880e-19
Identity = 71/224 (31.70%), Postives = 104/224 (46.43%), Query Frame = 2 
Query:  257 RTLGIFLQEAFGSFALLMMVFPFNSFLGDT--WSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAW--EFGSTLALILIVYVAATQIGLPGQRLVI-----ATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKSVTM----DQQWFLVYWVAPCAAAVAGTLLWKV 889
            R +  F QE  G+  ++M  F    ++G    + AW  H   V+  DY  GG QVNPA++VG +  G    +   VRI  Q+ GG  AFP+   +  +Y     GGP    G       A+  EF +T  L+  +++   +        +I     A  IRALI          GPAMNPM+AT+WAV+          D   + VYW++PC A+V    L+ +
Sbjct:   37 RYVQAFRQEFVGTLLMVMCTFSAGKWVGKASMYQAWGAHALGVISADYIGGGPQVNPAVTVGMWSLGKVTYTEGFVRIAAQLGGGLIAFPLFHAVAEAYDLEPFGGPEFDIGDKNAAIEAFLSEFCATALLMWAIFLLNWEFHFGKYHYIIKQSLTAVAIRALIEFFPT----AGPAMNPMLATSWAVFGVGEKFNYPDDFMHYFVYWISPCMASVFACALYVI 256
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: B7FQU2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQU2_PHATC)

HSP 1 Score: 95.5 bits (236), Expect = 5.480e-18
Identity = 67/240 (27.92%), Postives = 109/240 (45.42%), Query Frame = 2 
Query:  200 LCLCCAVLFATAATTMPSQRTLGIFLQEAFGSFALLMMVFPFNSFLG--DTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTG---QGMAWEFGSTLALILIVYVAATQIGLPGQRLVIATGIRALIHLSAVKGGKT-GPAMNPMIATAWAVYDKSVTM----DQQWFLVYWVAPCAAAVAGTLLWKV 889
            L +C A+ F        S R       E FG+  ++   F    ++G      AW  H   V+  DY  GG  VNPA+++  +  G    +   VR+  Q+ GG  +FP+   +  +      GGP       T    +    E+ +T+ L+  +Y+   ++       +I   + A+   S ++G  T GPAMNPM+ATAW V+    T     D Q + VYW+AP  AA+  ++L+ +
Sbjct:   24 LSICIALSFIEGGKYFKSFR------HEFFGTMLMIGATFSAGKWIGKESLRMAWTSHGLGVIAADYLGGGPHVNPAVTMSMWCLGKVSYTEAFVRVAAQLGGGLISFPLYHAISNAMDLEPFGGPEFNIPDDTKHATEAFLSEYVATMLLMFTIYILNWEMNFGTYHYLIKQSLTAIAIRSLIEGFPTAGPAMNPMLATAWDVFGVGSTFEYPSDFQHYFVYWIAPWMAAITASMLYVI 257
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BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Match: A0A1E7FY28_9STRA (Aquaporin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY28_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-16
Identity = 65/241 (26.97%), Postives = 107/241 (44.40%), Query Frame = 2 
Query:  218 VLFATAATTMPSQRTLGIFLQEAFGSFALLMMVFPFNSFLG--DTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGSTLALILIVYVAATQIGLPGQRLVI-----ATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKS----VTMDQQWFLVYWVAPCAAAVAGTLLWKVLEPKPK 907
            ++ + AA  +  ++    +++E  G+  ++   F    ++G  D   AW  H   V++ DY  GG  VNPA++V  +  G    +   VRI GQM GG  AFP+       +  +  GGP  +        ++ EF ++  L+ ++Y+   +        +I     A  IRALI          GPAMNPM+ATAW V+          D   + VYW  P  A +   + + + +   K
Sbjct:   28 LILSVAAGCVEHRKYWSAYVREFIGTILMVGFTFSAGKWIGQDDVMVAWSVHSVGVILADYFGGGQHVNPAVTVSMWALGKCTYTEAFVRIAGQMGGGLVAFPLFQYASEQFNLTPFGGPEFSQENDVDAFLS-EFFASFLLMWVIYILNWEFNFGSYHYIIKQFLTAVAIRALIEAFPT----AGPAMNPMLATAWYVFGVGNKYEYPNDAVHYFVYWFGPFLAGILAAITYIIFDGSDK 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1849.5770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G8A1_ECTSI2.530e-14897.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8P0_9STRA1.380e-7457.14Aquaporin-like protein n=1 Tax=Tribonema minus Tax... [more]
K8YV92_NANGC5.550e-4846.15Aquaporin sip1-2 n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A7S3XRL2_HETAK2.180e-2540.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A6U3A8R8_9STRA2.660e-2031.63Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9WQP2_9STRA2.870e-2028.69Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1VVQ9_9STRA7.780e-1931.74Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3LB05_9STRA7.880e-1931.70Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7FQU2_PHATC5.480e-1827.92Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FY28_9STRA1.000e-1626.97Aquaporin-like protein n=1 Tax=Fragilariopsis cyli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1849contigEcto-sp13_S_contig1849:8805..14703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score97.4
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2850.Phatr43157
Model size2029
Hectar predicted targeting categorysignal anchor
Exons7
EggNOG free text desc.Belongs to the MIP aquaporin (TC 1.A.8) family
EggNOG OGs2CGDK@1,2SA3Q@2759,2XANQ@2836
Ec32 ortholog descriptionMajor intrinsic protein
Ec32 orthologEc-19_003710.1
Cds size912
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1849.5770.1prot_Ecto-sp13_S_contig1849.5770.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1849 9912..14693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.7644498-UTR-Ecto-sp13_S_contig1849:8804..99111681462949.7644498-UTR-Ecto-sp13_S_contig1849:8804..9911Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1849 8805..9911 -
1681462949.8512151-UTR-Ecto-sp13_S_contig1849:14693..147031681462949.8512151-UTR-Ecto-sp13_S_contig1849:14693..14703Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1849 14694..14703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.7772412-CDS-Ecto-sp13_S_contig1849:9911..100461681462949.7772412-CDS-Ecto-sp13_S_contig1849:9911..10046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 9912..10046 -
1681462949.7886279-CDS-Ecto-sp13_S_contig1849:10571..106911681462949.7886279-CDS-Ecto-sp13_S_contig1849:10571..10691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 10572..10691 -
1681462949.7989135-CDS-Ecto-sp13_S_contig1849:11501..116961681462949.7989135-CDS-Ecto-sp13_S_contig1849:11501..11696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 11502..11696 -
1681462949.8074012-CDS-Ecto-sp13_S_contig1849:12308..123951681462949.8074012-CDS-Ecto-sp13_S_contig1849:12308..12395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 12309..12395 -
1681462949.8161142-CDS-Ecto-sp13_S_contig1849:12728..128331681462949.8161142-CDS-Ecto-sp13_S_contig1849:12728..12833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 12729..12833 -
1681462949.8300178-CDS-Ecto-sp13_S_contig1849:14060..143151681462949.8300178-CDS-Ecto-sp13_S_contig1849:14060..14315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 14061..14315 -
1681462949.839825-CDS-Ecto-sp13_S_contig1849:14678..146931681462949.839825-CDS-Ecto-sp13_S_contig1849:14678..14693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 14679..14693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1849.5770.1

>prot_Ecto-sp13_S_contig1849.5770.1 ID=prot_Ecto-sp13_S_contig1849.5770.1|Name=mRNA_Ecto-sp13_S_contig1849.5770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
MPMTRITPSEIPRGLRENVNSDTENILAARGDMRRHQGGQPRGAAPLSVV
CRERPHGQHVSLLLCLCCAVLFATAATTMPSQRTLGIFLQEAFGSFALLM
MVFPFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWND
ESSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMA
WEFGSTLALILIVYVAATQIGLPGQRLVIATGIRALIHLSAVKGGKTGPA
MNPMIATAWAVYDKSVTMDQQWFLVYWVAPCAAAVAGTLLWKVLEPKPKA
KTD*
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mRNA from alignment at Ecto-sp13_S_contig1849:8805..14703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1849.5770.1 ID=mRNA_Ecto-sp13_S_contig1849.5770.1|Name=mRNA_Ecto-sp13_S_contig1849.5770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5899bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1849:8805..14703- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACTCCACCATGCCAATGACGCGGGTAAGAAGGCACCCTACCTTGTAGA
GGGCACATTGCACTTGGCACGTACAGGATTGAGTGGTGTGACCTCGTGAG
GTGCCATGCTATGTTACACTTCACACGCACCTTCTCTTGGCCTCCTCAAT
GCTGCAGCAGCAGTTTGCCTCGGCTCGTTCTCACAGATGATGATGCACCC
TTTCGTACCCGTTACGCTTTCCACCACACTCTAGGCTTGAGCAATGGAGG
TGGTGCTGCAGTGGTTCTCCCACAAAGGGGGAAGAGGGAGTAACAACGTA
ACAACCCGATCCAGTTCCCGCCGATGTGTAGACCGTCATTCTGTCTCTTT
TTTGTTTCCTTTTTGAATATTGCATCGTCCCCTCTAAGATAACGCCATCG
GAAATCCCGCGGGGGCTCCGAGAGAATGTCAACAGCGACACGGAAAATAT
ATTGGCTGCACGTGGGGATATGCGGAGACATCAAGGCGGGCAACCACGCG
GGGCCGCTCCCTTGTCAGTTGTTTGCCGAGAGAGACCCCATGGGCAGCAC
GTCAGTCTTCTGCTCTGTCTCTGCTGTGCAGTTCTTTTCGCAACAGCCGC
CACCACCATGCCTTCTCAAAGGACTCTGGGCATTTTCCTCCAGGTACGGT
CGCTCTCTCTGTTATGGGTGATAGAATCTGTCGATTCCAAGGGATTTGAG
TTCCCGAACCTTTCCTGCGTCTCCTCACCATGTCGGGGCGCTCTGCGATA
GACATCTAGCAGGAGTGTGTTCTGTACTCGCAGCAGGTGGTTGTACACTG
GTTCGCTGAAGAAGGAGATGTTTCCGTCTGTGTCGTGGGCTTCAGGTTCG
AGGTACATACGCATTTGGGGCAGGAAATGAACCCACCCATGGTCATCTGC
TGAGTCTCCTTTTGCCGCAGTCGCAGTGCTGAACGTGAGTACAACACATG
TTCATTTGGAGCTCGGAGCACGTATGTGCTTTCATCCTGGTACTCTTCAC
GGACTCGCTGTAGAACAGTCCCGCCTTACGGCTCGCAAAGCACTCCAACG
ATCATGTTCACCGGACCTTCGGCACGTAGCTACCGCTGAAGACTCTTTGC
ACCGCGACCGACGCCGCTATATGAACTGCTTCCGAGAGGGAGCGACGCTA
GCAAGCATTGAACACATCCAAAACCGATCTCAAGCTGCAGTCTAGTAACC
ATCGCTTCGCCAAGCATTGTGGTCGCGGAACCGCCAACATCCTTGGTTTT
CAACGCCTTCGTGGTTTCTCTTCTTCTGGTCGGAGTCCATGGCATCACAG
GAGCGAGGAAAAAAGAGAATCGACGCGAACTCTACAGAGTAGGCCGTTAC
GTCCAATAATGACTTTCAAGCACACTGGAATTAGGGGTTGGGTCACGTGG
AGGCTACCAATCGCCTTCACAAGCATCGTGGACCCATCATCACCATTGTG
GACTATCTCGCTACCAGGGGGCGGTGCGGCCATGTCACACTTCCATCCTT
TGAACATGTCGTGTGACGAGTGGCACCTGAGTGTGGAATTCATCTCATGC
ATACGATCGCTTGAAGACTGCTGTTCTGGCTTTTTTCTTTCAAGGTCAAC
TAGTCAACTGGCCTAAACCCGCAGTGCCAGTAGAGATTCCACGTTGAGAG
CTAATCGCTTGCTACCCGACTACAACCAATATGTGTTCAAGCAGGAGCGG
ATGTAGCTCAGCCTTGTCATTTTTTGAGGGTTTCATCTGCATCCGGAGGG
TGTGCCATGTTCTTGGTTTTTCCATCATCTTACCTTCTGTTTGCCTTTGT
TTTCGAACACCCTCTAAATCACCCCCATTCGATGAGTGCTTCTTCGACAT
GTGCGCTTGCCGCGTTACAGGAGGCCTTCGGGTCTTTCGCGCTGCTGATG
ATGGTGTTCCCGTTCAACAGCTTCTTGGGCGACACTTGGTCCGCCTGGAT
TCAGCACTTCTTCTCCGTCATGATCGTGAGACCAATCGCAGCACTTGCCT
CGCGGCAGCAACAGTCAAGTGTAGCAACAATAAACTAGCTGTGGTGTTGT
AGCTGATCTGAGCGGTGTTCTAGAGAACCCAGAGGCGCTTGTGGCAGAGG
CAGGAACATGCGACTATCTGAAAAAAACTTTATTGCTCTGTAATTCCCCG
ATACCGGAGCACCGGTACAAGCATCAACTTGTTTCGCGTTGCGTTTTCTT
TATGTAGGAAAATTTTCGCTTGTATCTTCGGTCTCATTCCATGCCCCATT
CGCACGCCCCCCGATGCTGCATTCTTTTTGCACCGAAACCCTGGGGTTGG
CCTTCCAGACAGACTACACCAACGGAGGCGCCCAGGTCAACCCCGCTATG
TCGGTCGGCACTTTCTTCTACGGCTGGAACGACGAGTCGTCCTTGGTACG
TGCTAACAGACCGCAGGTGTTGAGTTTATGTAATTCCTTGCACAAAGGGA
CGAGATTAGGAGCAGACGATATCAATAGCCGCCGAGGATGGTGAACCTTT
TTGAAGCCGTTGCCCGACCGGATATTGGCCGCGTTGTTCTTCGGCCGACC
TCCCGTGTCTGATAGACTTGTTATTTTCAGTGCGAAGAGAGTCAGTGCCG
ATATCGGTGGAAATGGCAAGTTCTCGGCGAGGGACTCGAGCCAGACATGT
ATCTGTTCTGTATGCATACAACCGATGTGGGGTTATGAGGCACAATGATA
TAGTGGGCGTTGTCGCCCAAACCACCTCGATTTTCGTTCGTGAGATGATT
GGACAGCTAGATGTCCACACCAGCGTGTTTCTTTTGTAGCAACACTCGGG
CTGGAGGTTGGTTGCTTGTGAGCTGGGAGTGGTTGTCTTGATGCTGTCTC
TGGCCTCGATGCTGTTTCCTGAATGTTCACCCACTTGTACCGCGCCCCGA
TTCTCAAAAACTGAAAACAGTGCCTCTCATGCTTCGCGTTTCAACAACCC
CGTCTCCCTGTCTCCCGGCCTCGTGGTGTGTCTTCGTCTCCGCCCGCCAC
GCTCCAGGTGGTCCGCATCGTGGGACAAATGGTGGGCGGCTTCTACGCGT
TCCCCATCATGGCGAAGCTGCTCCCCAGCTACGCCACGAGCAGCATGGGC
GGGCCCACCCTGGCGGCGGGCGCTAGCACGGGTCAGGGCATGGCCTGGGA
GTTTGGCTCGACGTTGGCGTTGATCCTGATCGTGTACGTCGCGGCCACCC
AGGTATATGTCTTGTTTTCACGAAAGCTGAGTAGTTGGATCGAGGGATCC
GTGGGCGGGAACGCCACTTCCGCTCGAAGTGTGGTCGAGTTGGATGGATT
TAATTTTCCTCTAGCGATAATGAGCTGCCAGGCACAGGCACGTAGCGTGG
CGTTGTCTTTCGCACCGTGGCTTGAAATTTCGGCCCCACGTCCCTGAGGC
TGAACTGCAGAATTGTGACCGAGCTTTCCGCGACCACTCAAAGCCCGTTA
TTTTCCGTGCTTTGATCATCGATCTCGTGGTGGGTATGGTTATGCCACCG
TCATGGTGTTGGCATGCGTCGAGCGCCTTCGTCCTTTGTGTGTTGAGGAT
TGGCTGGAGTTGGGAAAAAGCAGGTGTGCGGCGATTTTGACTACCTAGTA
GGTCAATACGCAGTGCTGTTTTCGTCGACATCCATCTCTTAGGAGCAAGC
GGACGCGACGCCGTACGTTGGCCATTGTTAATATCCTCTCTCGTACGAAA
TCACTCGGCATATGGGGTCCGCGAAGTGGGTGGGCGCCTTCCCAGGACGA
AAAACTCGTCGCCTCACGTCCACCGACGTATACCTCCTGCCTACATATGA
CGCCATGGGCTACCTCGTCTCGACCCATGAGCAAGTTCTTCGGCGTGGAC
TAAATTAGGGGTGCGGTAGAATGTTGGCAGTGCGGACAGCAAAATTCAGC
TGGCTGCACCGCTCCCGCTCTCTCCCTTGATCGGGTTCCCAACGGTACTT
CGCCCCCTTTCCTCCATTCCTACCCTTGACTGTGTCGTTTCCGTTCGTTC
CGCAATTATTAGATCGGTCTTCCTGGACAGCGACTGGTGATCGCCACGGG
CATCCGCGCGCTTATCCACTTGAGCGCTGTGAAGGGCGGGAAGACCGGGC
CCGCAATGAACCCCATGATCGCGACTGCTTGGGTGAGAGCACGGTCGTAG
CTGCCGTCACATTTACATGTGGCGTGGGTCATAGGTACCGTATGTCGTGA
TTATGGTGGGTGGCTTGCGAAAACCAAACTCGCAACTGCACTGCTAGTTG
AGAGCGGGACAAGTTGGGCGTATGACATGGCAGGCAGTCATTGCAGCTCA
TGCGGCGGCATCGCCGTTTTTTTCTACCACGCAATGATGACGAGTTTGAC
GCATATGGCCTTAGGTTTAACGTTTTGTTCTGGTCGGTATTCTAGCGATA
TTTTGACAAGGTTTGGCTTCAGTCTCGCCAGGCCATCTCTTTTTTGTGGT
AACGCTATTGCCTGCGGTGCCACCCCGTCAGGCTAGCTTCCCTCCGTCCC
CTGCTATGGTAGCATTCACCACGTATTAAAAAACTTCCGCCCACGCAACC
CTGGCCTTAACTGAAGGAATGACCGGTGTTCCTGTGTGTAGTTGAGCCTG
GTGTCCCCTTACCGCTTGTTTTTCCTTGTTTGTTTTTGCCTATGTGATAT
TCCTCAGGCGGTGTACGACAAGTCTGTCACCATGGACCAGCAGTGGTTCC
TGGTGTACTGGGTTGCCCCGTGCGCCGCGGCGGTGGCGGGCACCCTGCTG
TGGAAAGTTCTCGAGCCCAAACCCAAGGCTAAAACCGACTGAGCTCACAT
GAAGTTTTGTGGGGATGATAGGTGCGAGGAGGGGAGAGCGATGCCTGGAG
CATCTAGACGGGACGCTGCACGGGGAGGACAGTATCCGAACAGCAGATTG
GGAAGGGGAAACTGTTCCCCACGATTTACCGCGTCTTTCTTGTCATGTCC
GATATCGTTTTTCCCTTTTGTGTAGTCGGTGGTGCATCCGGTTTCACGCA
CATTGTTCTCTGCCCGCGTGCTAGGCCTTTTGAGCACGTATGCAGCAAGG
AGGGGTGGCAAGTGAGTTGTGGCGGGGATGTTTCGTTTTTAGAGTATCCC
CCCCGCAGGTTAACGCGGTCAGTCGCTCTATGCATGTTACTTGAATATTT
TTGCCTCCCGTGTCTCACCTGTACCCGGAGTTTCTTGGTGTTTTTTTAGT
CAAAATAGAGAGTTCAGTGAGGGTACAGTTTTGGGTAGCCTCGTGTTTGG
GATAGGCACCCGTCCTGCAGCAGTATTCGCGTCGGCACGGTTGTCGACGT
GCTGAGGGTTGCACCTCGTTGCGGCTGCTGTGTGTGACGTCACGAGTTGC
ATGGTGGCACGAATTGGATGACACTGCACCGTCGGAGTTTGTGTAAGAGC
TACGTAGCGCAGCGCACTAGGCGGTAGAAAACCGTCATTCGTGTTTTTCA
CCGGCAGTACGCATTGGCAGTCATGGGCCGGGGATATAGTTCAACTGAGT
TCTGTGGGAATGCCTCCGCCACGACGCCGAATACATAGTTCCGCGACGGC
GTTGACGAGGTTTCACTTGTTCATTGTGTTTGTTTAGTTTTCTTGTCTTT
GTGTGTTTAGGAACGACGTCACTACTAATTTGTTTTCGTCGTCGTCATTT
GGCCGCCAACGCGAAACGGCCATTCGTGGAATTGTCTCTCGCATTTGCCG
GGGTCGTGCTCGGCCGCACCTCGACCCATCTCTTGGGCTTATGGCCAAAT
CGGGTCCTACGCTACTGCAGCCTGTTCTTGGAGAAATCTGCCAGCAGGGG
ACTTGGATTTCCCGGCCTGTACTGTTGGCAGTGAGCGTTGTGACCTCAAA
TCGCCCCCTCACGCAATCCCTTATGCGCTTTTTGAAAACACTCGGCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1849:8805..14703-

>mRNA_Ecto-sp13_S_contig1849.5770.1 ID=mRNA_Ecto-sp13_S_contig1849.5770.1|Name=mRNA_Ecto-sp13_S_contig1849.5770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1849:8805..14703- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAATGACGCGGATAACGCCATCGGAAATCCCGCGGGGGCTCCGAGA
GAATGTCAACAGCGACACGGAAAATATATTGGCTGCACGTGGGGATATGC
GGAGACATCAAGGCGGGCAACCACGCGGGGCCGCTCCCTTGTCAGTTGTT
TGCCGAGAGAGACCCCATGGGCAGCACGTCAGTCTTCTGCTCTGTCTCTG
CTGTGCAGTTCTTTTCGCAACAGCCGCCACCACCATGCCTTCTCAAAGGA
CTCTGGGCATTTTCCTCCAGGAGGCCTTCGGGTCTTTCGCGCTGCTGATG
ATGGTGTTCCCGTTCAACAGCTTCTTGGGCGACACTTGGTCCGCCTGGAT
TCAGCACTTCTTCTCCGTCATGATCACAGACTACACCAACGGAGGCGCCC
AGGTCAACCCCGCTATGTCGGTCGGCACTTTCTTCTACGGCTGGAACGAC
GAGTCGTCCTTGGTGGTCCGCATCGTGGGACAAATGGTGGGCGGCTTCTA
CGCGTTCCCCATCATGGCGAAGCTGCTCCCCAGCTACGCCACGAGCAGCA
TGGGCGGGCCCACCCTGGCGGCGGGCGCTAGCACGGGTCAGGGCATGGCC
TGGGAGTTTGGCTCGACGTTGGCGTTGATCCTGATCGTGTACGTCGCGGC
CACCCAGATCGGTCTTCCTGGACAGCGACTGGTGATCGCCACGGGCATCC
GCGCGCTTATCCACTTGAGCGCTGTGAAGGGCGGGAAGACCGGGCCCGCA
ATGAACCCCATGATCGCGACTGCTTGGGCGGTGTACGACAAGTCTGTCAC
CATGGACCAGCAGTGGTTCCTGGTGTACTGGGTTGCCCCGTGCGCCGCGG
CGGTGGCGGGCACCCTGCTGTGGAAAGTTCTCGAGCCCAAACCCAAGGCT
AAAACCGACTGA
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