mRNA_Ecto-sp13_S_contig1846.5754.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1846.5754.1
Unique NamemRNA_Ecto-sp13_S_contig1846.5754.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI)

HSP 1 Score: 999 bits (2583), Expect = 0.000e+0
Identity = 539/636 (84.75%), Postives = 555/636 (87.26%), Query Frame = 3 
Query:  834 HRHHLKATELDRSRDVRSSNPSFSFAPRSESAQLPREAPRETESGGKLLKPNKLEISQSHSSATDVS*AEGMARAARAAMADSGLFLSDRNRDEEDNNTLTGVENGADFGVSQRSITPPTVPMDRAWAIAFWVNVCITVLSAIFFKDEGAKAVNAHHRRLSGDNAAGSLLAPLLMVVAMIAVGWGVACMALYSLASCPKRILQVAYVGFAGIWGVAAVAALWNGITVIAVVCAFVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCHCGGEVIYSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLRLVSHAPCLRCFLRRFQEVVGYASAYAICFIGIYGLDFSEALRRVHELFQRRGITMIANDGVVGVGLFLLTMGLMSTYWVVMCSSLVMLTGAQFSGGLDGVIMFVAVVFVFVPVAVYFSTTMSVLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQQMQTECPGVASSNI-HVPIATSPKMVEMHDHRTTTHTEYQV 2738
            H HHLKATELDR          F +    ES        RE     +  + N+                EGMARAARAA+ADSGLFLSD NRDEED  TLT  ENGADFGVSQR  T P  PMDRAWAIAFWVNVCITVLSAIFFK EGAKAVNAHHRRLSGD+AAGSLLAPLLMVVAMIAVGWGVACMALYSLASCPKR+LQ AYVGFAG+WGVAA AALWNGITVIAVVCA VCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLS SAAGGSFAAFSPVVVGADGTTYSSLECQDI   SSPYGGGETTAGSGLSCHCGGEVI SDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLRLVSHA CLRCFLRRF++ VGYASAYAICFIGIYGL FSEALRRVHELFQRRGITMIANDG+V VGLFLLTMGLMSTY VV+CSS+VMLTG QFSG LDG+IMFV VVFVFVPVAV FSTTMSVLRSGHKAVFVCFVQ+PEA ANNH SQ YDDLSGAWQQ+QTECPGVASSNI HVPIATSPKMVEMHDHR TTHTEYQV
Sbjct:   51 HGHHLKATELDR----------FPWLTIFESLLFFCSEDRECAFASRGTERNR----------------EGMARAARAAIADSGLFLSDSNRDEEDI-TLTSEENGADFGVSQRGTTHPAAPMDRAWAIAFWVNVCITVLSAIFFKAEGAKAVNAHHRRLSGDSAAGSLLAPLLMVVAMIAVGWGVACMALYSLASCPKRMLQAAYVGFAGVWGVAAAAALWNGITVIAVVCALVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAGGSFAAFSPVVVGADGTTYSSLECQDITVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLRLVSHALCLRCFLRRFRDAVGYASAYAICFIGIYGLGFSEALRRVHELFQRRGITMIANDGIVSVGLFLLTMGLMSTYLVVVCSSMVMLTGVQFSGSLDGLIMFVVVVFVFVPVAVCFSTTMSVLRSGHKAVFVCFVQDPEAFANNH-SQMYDDLSGAWQQIQTECPGVASSNIPHVPIATSPKMVEMHDHRATTHTEYQV 658
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI)

HSP 1 Score: 722 bits (1863), Expect = 1.670e-250
Identity = 387/466 (83.05%), Postives = 399/466 (85.62%), Query Frame = 3 
Query: 1356 MVVAMIAVGWGVACMALYSLASCPKRILQVAYVGFAGIWGVAAVAALWNGITVIAVVCAFVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCHCGGEVIYSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLRLVSHAPCLRCFLRRFQEVVGYASAYAICFIGIYGLDFSEALRRVHELFQRRGITMIANDGVVGVGLFLLTMGLMSTY----WVVMCSSLVMLTGAQFSGGLDGVIMFVAVVFVFVPVAVYFSTTMSVLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQQMQTECPGVASSNI-HVPIATSPKMVEMHDHRTTTHTEYQV 2738
            MVV MIAVGWGVACMALYSLAS PKR+LQ AYVGFAG+WGVAA AALWNGITVIAVVCA VCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLS SAA GSFAAFSP+VVGADGTTYSSLECQDI   SSPYGGGETTAGSGLSCHCGGEVI SDSGCEFS GFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDT SVRGAFYRATHSSFG                             CFLRRF++ VGYASAYAICFIGIYGLDFS+ALRR HELFQRRGITMIANDG+V  GLFLLTMGLMSTY    W ++ SS+VM  GAQFSG L   IM V VVF FVPVAV FSTTMSVLRSG KAVFVCFVQ+PEALANNH SQTYDDLSGAWQQ+QTECPGVASSNI HVPIATSP MVEMHDHR TTHTEYQV
Sbjct:    1 MVVVMIAVGWGVACMALYSLASYPKRMLQAAYVGFAGVWGVAAAAALWNGITVIAVVCALVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAWGSFAAFSPMVVGADGTTYSSLECQDIAVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSSGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTRSVRGAFYRATHSSFG-----------------------------CFLRRFRDAVGYASAYAICFIGIYGLDFSKALRRAHELFQRRGITMIANDGIVSAGLFLLTMGLMSTYVVVVWSMVWSSMVMSMGAQFSGSLFFFIMSVVVVFFFVPVAVCFSTTMSVLRSGRKAVFVCFVQDPEALANNHGSQTYDDLSGAWQQIQTECPGVASSNIPHVPIATSPNMVEMHDHRATTHTEYQV 437
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: D7FN10_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN10_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 5.950e-109
Identity = 237/492 (48.17%), Postives = 303/492 (61.59%), Query Frame = 3 
Query: 1185 PPTVPMDRAWAIAFWVNVCITVLSAIFFKDEGAKAV---NAHHRRLSGDNAAGSLLAPLLMVVAMIAVGWGVACMALYSLASCPKRILQVAYVGFAGIWGVAAVAALWNGITVIAVVCAFVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCHCGGEVIYSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPG-DTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLR-LVSHAPCLRCFLRRFQEVVGYASAYAICFIGIYGLDFSEALRRVHELFQRRGITMIANDGVVGVGLFLLTMGLMSTYWVVMCSSLVMLTGAQFSGGLDGVIMFVAVVFVFVPVAVYF--STTMSVLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQQMQTECP 2639
            PP    DRAWA+AF  NV ITV+SA  F   G       +   RRLS     G ++ P L+V  ++ + W  A   L+++ +  +RIL++AY+  AGI G+AAV+AL  G     +  AF+CA     + K QSR+RFG+ANLKVA LAV+SMP T+R  L MS VQV+W +LS  AAGG+ A+    V G DGTTY +  C D++      G         LSC CGG V   +S CE+ G    W LA FWL S+TW   V+RNVVTATV GSVASWW+S   D S VRGA YRATH SFGSLCKAAAI   +R+    +R L     C    L   Q +  Y  AY+ICFI IYGL FSEA +RV ELF+RRG+T IAND VV VGL  +  GL   +   +C + +++T A  + G    ++ V V+F+F P+ V F  +TT+ VLRS  KAVFVCFVQ+P+ALA+NH  Q +DDLS AW +MQ ECP
Sbjct:   35 PPAT--DRAWAVAFKANVAITVVSAFSFGSAGLDEFVGGDESGRRLS-TGGGGGVVGPALVVFGIVGLAWAFAWGVLHAVINYSERILKIAYLSLAGISGMAAVSALAAGHWFGCLFPAFLCAWTVRFYLKRQSRIRFGSANLKVAGLAVKSMPWTVRAGLLMSGVQVLWVLLSAMAAGGTIASLR-TVTGLDGTTYKASSCSDVMLDPPTRGMVHH-----LSCMCGGHVASYNSACEYEGR-GLW-LALFWLASLTWGADVIRNVVTATVTGSVASWWYSADRDASPVRGALYRATHGSFGSLCKAAAISTAVRLLTRTVRRLAKVGRCGSFVLGWLQRLADYILAYSICFISIYGLSFSEAGQRVSELFRRRGVTTIANDIVVDVGLTAVCAGLTVCF---LCLAYLVITVAHRALG-GTFLVGVYVIFLFSPLLVAFVVATTVEVLRSSFKAVFVCFVQDPDALASNHGRQLHDDLSRAWGEMQAECP 511
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: D7FHM5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM5_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 1.020e-98
Identity = 197/328 (60.06%), Postives = 224/328 (68.29%), Query Frame = 3 
Query: 1356 MVVAMIAVGWGVACMALYSLASCPKRILQVAYVGFAGIWGVAAVAALWNGITVIAVVCAFVCAIVAWV---------------FWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCHCGGEVIYSDSGCEFSGG-FPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAA---------AIVAVIRVAMFPLRLVSHAPCLRCFLR--RFQEVVGYASAYAICFIGIYGLDFSE 2258
            M VAMIAVGWGV  MAL S A+ PKR++Q  ++G AG+ GVAA A LW+ +           A++ WV               FW +Q  LRFGAA+L VAALAVRSMPGTI LALFM A++VVW MLS  +A GSF AFSPVVV ADGTTYS L CQDIV SSSPYGGGE T GSGLSCHCGGEVI SDSGCEFSGG F RWVL  FW+GS  W + VL +VV ATVAGSVASWWFSPGDT+SVRGAFYRATHSSFGSLCKA           I   +R++       +H    R ++   R    V +A  YAICFIG+YGLDFSE
Sbjct:    1 MGVAMIAVGWGVLRMALNSFANFPKRMVQATFMGVAGVSGVAAAAPLWSAL--------LKKALITWVVXXXXXXXXXXXCIMFW-HQIHLRFGAADLNVAALAVRSMPGTIYLALFMGAMRVVWFMLSALSAVGSFVAFSPVVVSADGTTYSFLGCQDIVVSSSPYGGGEATTGSGLSCHCGGEVISSDSGCEFSGGGFQRWVLGVFWVGSFIWGLDVLHDVVLATVAGSVASWWFSPGDTNSVRGAFYRATHSSFGSLCKACPTQMADTWGVISRSVRISNSTGPNSAHVFSSRNWMSFSRNLGAVCHAYIYAICFIGMYGLDFSE 319
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: A0A6H5K950_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K950_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 1.990e-87
Identity = 159/207 (76.81%), Postives = 165/207 (79.71%), Query Frame = 3 
Query: 2187 QEVVGYASAYAICFIGIYGLDFSE---------------------ALRRVHELFQRRGITMIANDGVVGVGLFLLTMGLMSTYWVVMCSSLVMLTGAQFSGGLDGVIMFVAVVFVFVPVAVYFSTTMSVLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQQMQTECPGVASSNI-HVPIATSPKMVEMHDHRTTTH-TEYQV 2738
            +  VGYAS YAICFIGIYGLDFSE                     ALRRVHELFQRRGITMIAND +V VGLFLLTMGLMSTY VV CSSLVMLTG QFSG  DG+IMFV +VFVFVPVAV FSTTMSVLRSGH AVFVCFVQ+PEALANNH SQ YDDLS AWQQMQ ECPGVAS+NI HVPIAT PKMVEMHDHR TTH TEYQV
Sbjct:    5 RPAVGYASTYAICFIGIYGLDFSEGAGAHPISRTTGSFAYQPMGSALRRVHELFQRRGITMIANDDIVAVGLFLLTMGLMSTYLVVACSSLVMLTGVQFSGSWDGLIMFVVLVFVFVPVAVCFSTTMSVLRSGHNAVFVCFVQDPEALANNHGSQRYDDLSEAWQQMQAECPGVASANIPHVPIATIPKMVEMHDHRATTHHTEYQV 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: D8LGQ1_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ1_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 3.040e-75
Identity = 208/528 (39.39%), Postives = 271/528 (51.33%), Query Frame = 3 
Query: 1206 RAWAIAFWVNVCITVLSAIFFKDEGAKAV------NAHHRRL-------------------SGDNAAGSLLAPLLMV--VAMIAVGWGVACMALYSLASCPKRILQVAYVGFAGIWGVAAVAALWNGITVIAVVCAFVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCHCGGEVIYSDSGCEFSG-GFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPG-DTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAM-FPLRLVSHAPCLRCFLRRFQEVVGYASAYAICFIGIYGLDFSEALRRVHELFQRRGITMIANDGVVGVGLFLLTMGLMSTYWVVMCSSLVMLTGAQFSGG----------------------LDGVIMFVAV---VFVFVPVAVYFSTTMSVLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQQM 2624
            R WA AF VNV +TVL+A +F  EG +A+          RRL                    G+   G      ++V  VA++ +   V+   L+SL  C +  L  +Y  F GI G AA      G    AVV + V         + + R  FG+ANLKVA++A+R MP T R A+ M  VQ +W M++  AA GSF A   V    DG+++ ++ C D        GGGE    +  SC C G  I SD  CEFSG G P   L   WL S+ W   V+RNVV  TV+GSVASWWF+P  D++ V+GAF+RAT SSFGSLCKAAAI  +I  A     R++ + PC    L    +   Y  AY + FIGIYGL F+EA  RV E+FQRR +T +AND VV VGL LL +     Y +V   + VM  GA    G                      +D V  +  V   +F  V +A   ST + V+RSG KAVFVCFVQ+PE LA  H  + + +L  AWQ M
Sbjct:   48 RGWACAFKVNVLVTVLAAFWFGFEGLEALANDSLSGQGRRRLMHXXXXXXXXXXXXXXXXGEGEEGHGGAHLSNVIVGGVALLGIASLVSAGMLHSLFRCGRGFLAASYAVFVGIIGAAAGVMFLVGAVPAAVVFSVVFVFGLVALRRRKHRFAFGSANLKVASMAIRDMPWTYRSAILMGIVQFLWCMVAAIAALGSFVALETVAA-PDGSSHRAIYCLDFADGGDGGGGGEDVFAAQNSCVCNGTKI-SDGECEFSGLGLP---LMMVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLRYVPCATTLLAWLNKAASYVLAYTVAFIGIYGLSFNEAGGRVREMFQRRAVTTLANDIVVEVGLRLLALSATVVYALV---TGVMTFGAFMRVGGPAIFDDEEAAAGDSKDGDGSVVDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAWQHM 567
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: A0A485LKP1_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKP1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.220e-26
Identity = 113/362 (31.22%), Postives = 175/362 (48.34%), Query Frame = 3 
Query: 1572 QSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCH---CGGEVIYSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIR----VAMFPLRLVSHAPCL-RCFLRRFQEVVGYASAYAICFIGIYGLDFSEALRRVHELFQRRGITMIANDGVVG--VGLFLLTMGLMSTYWVVMCSSLVMLTGAQFSGGLDGVIMFVAVVFVFVPVAVYFSTTM---SVLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQ 2618
            ++R+ F AANL+VAA AV+    T  LA  + AVQ+VW  L   A  G   + +PV+    G +  S  C+      S      +   S L+C      GEV+         G F       F L S  W + V++NV+  TVAG+VASWW +     +  GAF RAT +SFGS+C  + +VA+++    VA           C+  CFL+  + ++ + + +A  ++GIYG  F  A + V  LF  RG++ + ND ++G  +G   L+ GL+    + +  + V      F GG         V+F  + +AV     +   SV+ S    VFVCF ++P A A  H  + Y ++  AW+
Sbjct:  158 RNRIPFAAANLQVAAAAVKHNMSTFPLAFGLMAVQIVWFFLWTIALLGIIKSVTPVIPNPSGLSTGST-CKVNSDCQSDMCRKISKKSSVLTCQPLVSAGEVL---------GYF-------FMLVSFFWGVNVIKNVLHTTVAGTVASWWMAGDPRKATAGAFRRATTTSFGSICLGSLLVAILQAMETVANEAKSRGDWVACVAECFLKCLRGIMEWINRWAFVYVGIYGFKFFHAGKSVFTLFSTRGLSAVVNDDLIGHCMGFMALSNGLICAL-LGLAYTCVDKEHTAFPGG--------TVIFPIIGLAVGIGVALIPLSVIDSAVATVFVCFAEDPAAFAQTH-PELYTNMVAAWR 492
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: F0W963_9STRA (Choline transporter-like protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W963_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.830e-25
Identity = 110/379 (29.02%), Postives = 174/379 (45.91%), Query Frame = 3 
Query: 1572 QSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCHCGGEVIYSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLRLVSHAP------------CL-RCFLRRFQEVVGYASAYAICFIGIYGLDFSEALRRVHELFQRRGITMIAND---------GVVGVGLFLLTMGLMSTYWVVMCSSLVMLTGAQFSG-GLDGVIMFVAVVFVFVPVAVYFSTTMS--VLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQQMQTE 2633
            Q+R+ F +ANLK A  A     G   +AL +   Q+ W  L  ++A G +  F            S   CQ  +  ++ Y                      D+  +  G    +++ A  L S+ W   VL+N++T TVAG VA+WW+  G+     GA YR+  +SFGS+C  +  V++++      R++                CL  C L   + ++ Y + +A  ++GIYG DF  + + V +LF+ RG T + ND         G +GVG     +GL++ Y+    +S     G + SG G+ G   F+A   V        S TM+  VL S H  VFVCF ++P AL +NH  + Y+DL   W+Q  ++
Sbjct:  168 QNRIGFASANLKCACAATIKFTGVFWVALLLVIQQIFWLTLWSTSAIGVYGMFKE----------SHPNCQGFLKDNTRYN--------------------VDASGDCGGAGTGFIVFAM-LISLYWGQQVLQNILTCTVAGVVATWWYRSGEDGITVGALYRSVTTSFGSICLGSLFVSILQAMQTMARMLREKAREEDNAALACVGCLAECILGCLESIMEYLNMWAYIYVGIYGRDFRTSAKAVMDLFRSRGWTAVINDDLASSALTFGAIGVGCVASCIGLIAVYFSP--ASWFDAFGTKKSGYGVIGAAAFIAGTSV--------SMTMANVVLASLH-TVFVCFAEDPAALQHNH-PREYEDLISGWRQFHSD 503
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: A0A024GUN9_9STRA (Choline transporter-like protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024GUN9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.230e-24
Identity = 107/378 (28.31%), Postives = 174/378 (46.03%), Query Frame = 3 
Query: 1572 QSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCHCGGEVIYSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLRLVSHAP------------CL-RCFLRRFQEVVGYASAYAICFIGIYGLDFSEALRRVHELFQRRGITMIAND---------GVVGVGLFLLTMGLMSTYWVVMCSSLVMLTGAQFSG-GLDGVIMFVAVVFVFVPVAVYFSTTMS-VLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQQMQTE 2633
            Q+R+ F +ANLK A  ++    G   +AL +   Q+ W  +  ++A G +  F            S   CQD +        G T      S  CGG             GF  + +    L S+ W   VL+N++T TVAG VASWW+  G+     GA YR+  ++FGS+C  +  V++++      R++                C+  C L   + ++ Y + +A  ++GIYG DF  + + V +LF+ RG T + ND         G +GVG    ++G ++ Y+  +  S     G + +G G+ G   F+A   V        S TM+ V+ +    VFVCF ++P AL +NH  + Y+DL   W+Q  ++
Sbjct:  156 QNRIGFASANLKCACTSILKFSGVFWVALALVIQQIFWLTVWSTSAIGIYGMFKE----------SHPNCQDFLK-------GNTKNDIAASGDCGG----------IGTGFILFAM----LVSLYWGQQVLQNILTCTVAGVVASWWYRSGEDGITVGALYRSVTTAFGSICLGSLFVSILQAMQAMARMLREKAQEEDNAALACVGCIAECILGCLESIMEYLNMWAYIYVGIYGRDFRTSAKAVMDLFRGRGWTAVINDDLASSALTFGAIGVGCVACSIGFIAVYFSPV--SWFDFFGTKKAGYGVIGAGAFIAGTSV--------SMTMANVVLAALHTVFVCFAEDPIALQHNH-PREYEDLISGWRQFHSD 491
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Match: A0A4D9CU85_9STRA (Choline transporter-like protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU85_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.560e-24
Identity = 122/422 (28.91%), Postives = 199/422 (47.16%), Query Frame = 3 
Query: 1431 RILQVAYVGFAGIWGVAAVAALWNGITVIAVVCAFVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVTSSSPYGGGETTAGSGLSCHCG-----GEVIYSDSGC-----EFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLR-----------LVSHAPCLRCFLRRFQEVVGYASAYAICFIGIYGLDFSEALRRVHELFQRRGITMIANDGVVGVGLFLLTMGLMSTYWVVMCSSLVMLTGAQFS-GGLDGVIMFVAVVFV--FVPVAVYFSTTMSVLRSGHKAVFVCFVQNPEALANNHCSQTYDDLSGAWQQM 2624
             I+  A +G     GV  + AL  G  V+A++   + AI    ++  + R+ F + NLK +A A    P  + LA  M+ VQ+ W++L   AA G        +V  +GT++   +C D             TAG+   C C      G V  S++G      EFS      ++   ++ S+ W   V++NV+  + AG VA WW+S  +   V  +F+RA+ +SFGS+C  + I+AV+R     L+           L     CL   + R  ++    + YA+ +   YG  F E+  +  ELF+R G+T I ND +    L      L++    ++ + +  + G  F  GG   VI+ V   F   FV + V     MSVL +G   VFV F ++P+A A +H +  Y++L+ AW ++
Sbjct:  238 HIITAALIGSIISSGVGVILALVYGNFVMAIMAGVMGAIQVMWYYCVRDRIPFASMNLKCSATATLQYPSILFLAAVMTVVQMGWALLWQLAAYGVAVTKGAEIVVIEGTSFLLSQCTD-------------TAGA---CACSRETAEGVVALSEAGVCKDLSEFSANVSPLIMFLLFI-SLFWGSLVVKNVLFCSAAGMVADWWYSGQNKGVVSKSFFRASSTSFGSICFGSLILAVLRALRQMLQAGRRQGQRENALTCVVNCLMAIIERLMQIF---NRYAMVYCATYGTGFRESGTKTFELFKRAGLTAIINDDLAETAL-----NLVALIIALLTAVVGFVYGTMFGLGGNWPVILAVVGFFAGFFVSLIV-----MSVLDAGVATVFVVFAEDPQAFAQSHPA-LYEELAQAWAKI 628
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1846.5754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHM6_ECTSI0.000e+084.75Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM4_ECTSI1.670e-25083.05Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FN10_ECTSI5.950e-10948.17Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM5_ECTSI1.020e-9860.06Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5K950_9PHAE1.990e-8776.81Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D8LGQ1_ECTSI3.040e-7539.39Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
A0A485LKP1_9STRA1.220e-2631.22Choline transporter-like protein n=1 Tax=Aphanomyc... [more]
F0W963_9STRA1.830e-2529.02Choline transporter-like protein n=1 Tax=Albugo la... [more]
A0A024GUN9_9STRA1.230e-2428.31Choline transporter-like protein n=3 Tax=Albugo ca... [more]
A0A4D9CU85_9STRA1.560e-2428.91Choline transporter-like protein n=4 Tax=Monodopsi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1846contigEcto-sp13_S_contig1846:3852..14532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score993.4
Seed ortholog evalue4.3e-287
Seed eggNOG ortholog2880.D7FHM6
Model size3247
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
Cds size1695
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1846.5754.1prot_Ecto-sp13_S_contig1846.5754.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1846 4358..12155 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.5924628-UTR-Ecto-sp13_S_contig1846:3851..43571681462948.5924628-UTR-Ecto-sp13_S_contig1846:3851..4357Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1846 3852..4357 -
1681462948.7128847-UTR-Ecto-sp13_S_contig1846:12155..121861681462948.7128847-UTR-Ecto-sp13_S_contig1846:12155..12186Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1846 12156..12186 -
1681462948.7210257-UTR-Ecto-sp13_S_contig1846:13138..133241681462948.7210257-UTR-Ecto-sp13_S_contig1846:13138..13324Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1846 13139..13324 -
1681462948.7300632-UTR-Ecto-sp13_S_contig1846:13703..145321681462948.7300632-UTR-Ecto-sp13_S_contig1846:13703..14532Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1846 13704..14532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.6085227-CDS-Ecto-sp13_S_contig1846:4357..45461681462948.6085227-CDS-Ecto-sp13_S_contig1846:4357..4546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 4358..4546 -
1681462948.6187565-CDS-Ecto-sp13_S_contig1846:4870..51631681462948.6187565-CDS-Ecto-sp13_S_contig1846:4870..5163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 4871..5163 -
1681462948.635149-CDS-Ecto-sp13_S_contig1846:5825..60041681462948.635149-CDS-Ecto-sp13_S_contig1846:5825..6004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 5826..6004 -
1681462948.6454105-CDS-Ecto-sp13_S_contig1846:6862..71581681462948.6454105-CDS-Ecto-sp13_S_contig1846:6862..7158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 6863..7158 -
1681462948.654714-CDS-Ecto-sp13_S_contig1846:7812..79891681462948.654714-CDS-Ecto-sp13_S_contig1846:7812..7989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 7813..7989 -
1681462948.6648905-CDS-Ecto-sp13_S_contig1846:8337..85021681462948.6648905-CDS-Ecto-sp13_S_contig1846:8337..8502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 8338..8502 -
1681462948.6751883-CDS-Ecto-sp13_S_contig1846:9374..95601681462948.6751883-CDS-Ecto-sp13_S_contig1846:9374..9560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 9375..9560 -
1681462948.6891751-CDS-Ecto-sp13_S_contig1846:10514..105961681462948.6891751-CDS-Ecto-sp13_S_contig1846:10514..10596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 10515..10596 -
1681462948.701767-CDS-Ecto-sp13_S_contig1846:12027..121551681462948.701767-CDS-Ecto-sp13_S_contig1846:12027..12155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1846 12028..12155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1846.5754.1

>prot_Ecto-sp13_S_contig1846.5754.1 ID=prot_Ecto-sp13_S_contig1846.5754.1|Name=mRNA_Ecto-sp13_S_contig1846.5754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=565bp
MARAARAAMADSGLFLSDRNRDEEDNNTLTGVENGADFGVSQRSITPPTV
PMDRAWAIAFWVNVCITVLSAIFFKDEGAKAVNAHHRRLSGDNAAGSLLA
PLLMVVAMIAVGWGVACMALYSLASCPKRILQVAYVGFAGIWGVAAVAAL
WNGITVIAVVCAFVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTI
RLALFMSAVQVVWSMLSVSAAGGSFAAFSPVVVGADGTTYSSLECQDIVT
SSSPYGGGETTAGSGLSCHCGGEVIYSDSGCEFSGGFPRWVLAAFWLGSV
TWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKA
AAIVAVIRVAMFPLRLVSHAPCLRCFLRRFQEVVGYASAYAICFIGIYGL
DFSEALRRVHELFQRRGITMIANDGVVGVGLFLLTMGLMSTYWVVMCSSL
VMLTGAQFSGGLDGVIMFVAVVFVFVPVAVYFSTTMSVLRSGHKAVFVCF
VQNPEALANNHCSQTYDDLSGAWQQMQTECPGVASSNIHVPIATSPKMVE
MHDHRTTTHTEYQV*
back to top

mRNA from alignment at Ecto-sp13_S_contig1846:3852..14532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1846.5754.1 ID=mRNA_Ecto-sp13_S_contig1846.5754.1|Name=mRNA_Ecto-sp13_S_contig1846.5754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1846:3852..14532- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCATGGCCTCTGTTGCTGCTACAGCGGTAAGGAACCACCCAACCGT
TTTTGCAGTGCATCGATAACCCACCCCCGGATTGTACCTGCCTTCAGCGG
TGTACCCGTGGTCTCTCCGGCTCCATCTGGTGTTACTGGCTGCCCCACCT
TGATGCGTGGCCCATCTTGTTTATCTCCAAGGAAATACGCGGATTTATTT
ATTGGCGTCGCTACTCCCCCTCCCCCTGCCCGCTTGCTTATCCTCGTTTT
GCTCTCGCGCACCTTTCCAGTTTGGTTATAGGGGTCTTTCGTTTAGAGTT
TGGGGCTACAGTAGACTGGTATGTTCATATTGTATATCCTCCTAAGGAAT
ACCAGACGCCTTCGTAGATAGGAAACCAGGCTGACCATATCAAAACTGGT
CGCCCACTCTCGGATATAAAACCCTCCAATCACGAAGCCTTGTTTCTTCT
TTCCTTCAGGATCCTTCTCGCTCCATCTTCCCTCACTGCTGTCCCCTACC
GTGGCCGTCTCTCGCACTCCCCTTTCCCGCTTTTCCAAGACAATCAATAC
TCATTCCGGATCTTGCATGCTTGCTCCCACGCCTGCCCGTGATTCCCCAA
GGATTGGATTCTCTGCCCTTTCAGGACAGCGCCGCCTTCGGTGCCCCACC
CGCTCCAGCCCCCGTCTAATACAAACTCCCGCGACGACAGGAATTTTTCA
GGAAAAAGTTGAATTTGTGTCCCTGGGTCACGGCGGTTCCTTGGGGTCCT
AGGGTTTGGTTACGAGGCTGGAAGGTGCTACGTGATGACCGCTTGTTGAT
CGGGCTGATGGAGGAAGCACGGGATGTGGGTTAGTGGGGAAGAACGCGGT
CGTTCCTTTCTACCTTCCGCATATCGCGCGATCTACTCCTTGAATGCTCG
GATGTTTCAACACGTAGCGTTTCCTGTAAACGCAAATGACTCGATGACAA
CCTCCTCTCACCTCCACTTTCCACCCTTGTCGGTCTCTATTCCTCCCCAT
TCTTGCCATTGTCTGTCGTCTCTCTGCCAATAGCATACCTCGCTCTACCG
CAGAGGCCGTGCGCTCCGTCAGAGCTTGACAGCCCCAGGAAAATGCAGGC
TTCCAGAATATTCTCAGCGGGTTTCTCGGTTGCGTGCCCCCCTGGCGGCT
TTGCTTGCCCCCCACCCGATGATTGTTTTCGCTGCATCATTTACACACAA
CACGGCAGGGTGCATCGTCACCATCTGAAGGCAACAGAACTCGACCGTTC
GCGTGACGTACGATCTTCGAATCCTTCCTTTTCTTTTGCTCCGAGGAGCG
AGAGCGCGCAATTGCCCCGAGAGGCACCCAGAGAAACAGAGAGCGGAGGC
AAGTTGTTGAAGCCCAACAAGCTCGAGATCTCTCAGAGTCACAGGTAAAG
AGACATGAGAAGGGCCTGATTGCTGACACATTGTGTGCCCGTTGTGATCT
GAATGCCGGAGTCGTGGCGCCCACGTCGATGGTTGGGGCTACAGCAGCTG
TGTGTAATTGGGATGGGCAGCTTGCCTCGGCATGCGGCGGCGGAACTTGG
ATTTTTTTTGGTTCTGAGCAGCTCAGCTGGCTTCCTGGGCTTGGCGGTCA
GCCGTATTTCGTGTTTGCGCGAGTGTTTGGAGGTTGGAGAGTAGGTTCCG
CCTCAACGACTTTCCCACGATGCCGGAGTCATCGAGGAATTGCACTTTAC
ATCTACGCGTCTTGTTCTATCCACGGCAGTACCTCTGTGCGTACAACATG
CAGCATTGTGTGGAACGAGCGACGAACGGTTCAAGGTCCGTTGAAAAGAT
GCGAAGTCTGCGGTTTCACGCATATTTTTATCTGTGCACCACTGTGCTTC
ATATCTGATTTCCCATCTCACCTGTGCGATGACCGGAGGCCACCGCCCTG
GCAGGGCTACTCCCCGGCGGATTCCCCGGGCGTCCAATTCACCTGGCGTG
CCAAACCGTTTCCTGGGCTGTCTGTGATTTCGTTTCTGCTGTGTTGGATC
TTTGAAGTTGTTGGAGTTGCTTTCAAATCGTTCCGACATCGAGTCTTTTC
TGTGTTTGTATTCATGTTTCCCAATCTAGGTTCGTGCCTCCTCCTCGAAT
CGGACTCCATGTTGGCACACACCAGACTGATTTTGTGAAAGTAAAGCCAC
ACGAAGGGTGGCCTGTTGCTGTAGTCTACGATTTTCACTTAGGGGAGGTA
CAGGAGATAAAGAGTGTTTCATTTGTACCCTATACCACAGGCGCCTTTTA
TTTGCAGGGTTGGCAAGTCCAACGAAGGCACGTCGAATGGTTCCGAACGA
GTTTTAACATTTCGAAAACAACTCCGAATGTTCTCGACAACGGCAGCAGC
GCCACCGACGTATCTTGAGCAGAAGGCATGGCTCGGGCTGCAAGAGCAGC
AATGGCGGACTCGGGCTTATTTCTGTCAGACCGCAACCGCGATGAGGAAG
ACAATAACACCCTTACGGGCGTAGAGAACGGCGCGGACTTCGGCGTTTCG
CAACGGTGAGCGGTCGGGAGGGGGGGGGGGACTCTCGTGTTTTCGCATGC
CTTGGCGGATAGACCAGCGTCTTCGAGAGGACGAGGCGGTGAGGGTCTAT
GGTGTTGCCAACCACTCACATAGCGAGAGGAATTTTTCAATTGAATACAC
TTGCCACCCATGCTTTTTTCTCTGCCCGTAGAAGTAGTAGTAGTACCGTA
AGAGGTGGAGAGATGGCACCCCTCCTTGACCGCGTCTCGCTCTTCAACCA
TGTGGCTGGAGAAAGCAACCCATACGTCTTCGGACAGCCCTCGGGGATTT
GGTTCCAAATCCGCCATTTTTAGTGTTGACAAAAGCTTGTTTGTGGAGTG
TAATGGAGCAGTGGAATGGCAGGTGCCATCTCTGGGCCTCCTACACCACG
TGTGGTTGCTGTTGTTGCCACCTGTCGGTGCTTGCACCTGTCGTCGCCCA
CATACAACACAGAAATCGCAAACAAAAGCAATTCCCGTTTGTATGCATAC
TGAGCTCGAAATATATAGAGAGAGAGGGCAGAGAGAGGCGGGAGGGGGGG
GGGGGGGGGGGGAGAGAGAGTTCGAGACCTGCTCGAGTCTTTGTCCATAT
GAAACCTTATCCTGTAGCACTAAACTGTGGCGGAGCCGAACGACGAAACC
TACATGTCCCCGCCGGCCCTCTCTCTACGTGTTCATGCCCCACCCCCATC
GGCAATGCCAACACCGCAACCAGCAGCACCATCGGAGAGAGGTGCTCAAA
TTTGCCAGATGAACCCTTCATCCGATGAAGTTACACCATTAGACCAGTCG
CCGAATAAAGATATGCTCAGAGCTCATTAGCACCGTAAAGATATGCTCGG
AGCTCATTAGCATCCGGCTGGATCACTTGTGGGTTTACGGTTTTATTCAC
TGGGATTGCGATTAAGGATCTCCGGGGACGGACCCCCCGCCAGACGCTGC
GGACAAAAGACAGAATGGTGCTCGGGGAAGTGACCAGCCGGCATTCGAAC
GTGTGTGAGTCTTCCCAACACGCCAAATGTTAAACCAAGGTGTACCTTAG
TACAGCAAAGGATTGACGCACGGGTTCAAATTCTGCTGGACCAATTTCGA
AGCACCATTATGTTCTGTTTCCGGCAGCGCCCGACGAGGAATCCGTCCCC
GGAGACCCCTGCGCTCAATCCCAGTGATTAAAAGCCGTAATACCCACGTG
ATCCAGCCGGGTGCTATTGAGCTGAGTGCATGCCTTTTATTCGATGAAGA
TACACCATGAGACCAGTCAGCACCATAAGACCGTGTGACTGGTCTAATGG
TGTATCTTTATCGAATAACCTTATCCTGCAACACCATGAACTGTGACCGA
GCCAAATAAGACCTGAATTTCGTCCGACCCTCTATGCCCCCGCCCCCCCC
CGCCTTATCCTTCGACAACACCAACACCGTAACCAGGAGCATCACTCCCC
CGACGGTCCCGATGGACAGGGCTTGGGCTATCGCCTTTTGGGTTAACGTG
TGCATCACCGTCCTGTCCGTAAGTCAGACACAGAATGAAGCCGCTGGTGC
TGTCCCGACCAATCTACTCTGTGCAGGTTGACTGGGGGTCATTCACAGCA
AGAAGATAACCTCGTTCGACGCCGAGCAGCGGTTGGGTAAACATATCTCT
CCAGAAGCTTACGGGAGGAGTTGTGGTTATGTGCATCCTGTTTGTGAACG
TATACACGGAGAATATTTAGTGAAGCAGACGTAGATGTTTATGTACATAC
AGGAGTCGTCCCTCCAAAGTTCACCCGAGTTTGTCATGACCGTATCGTTT
TGTTGAGTCTCCTTCAGTTTTTCGTCTCGACCCTCTCTCCCCGCCACTCG
TGCTGGAAATGGCTCCGGCGACTGTGCCATGAGAGTAAAACTCTCCCAAC
GATATGCCAAGTTCCAGTTCGACCCTCATGCCACATACGGAGACCCGCCG
AGGACACATATACATAAACGGCCATGGTTTACGAGAGGGTCAGGATGAGC
TCAAAGCACTCGAACCCGGTTTATTTCTTGAACCGTACCACGAAAAAGTG
ATACCGTAGGTCCCATGATATTTCTCATGGCCATGGCAGCTGCTTCGGTC
ACTCGGTTACTTGCACGTGGTCTCTACTAAGCAGTAGCCGCTGTTGCCTA
CCGTTTGTTGGGACACAGCGTTCGGTGCGCGTGAGGGTGTCAAAGTGGCA
ATGCCACCACCCCGTGGTAAATGTCCGAAGTCCGGTAGTCTAATGAGAAG
GTGGAGAAATGGGAACAGAGGGCGCATTTGCCCCAATTGTTTGGACGTTG
AGTTGTGAACTATTTGCGACAGGTGGGCCACTACCTTCACACCTGGAAGC
CGAAAAAAACGAAATCCATGTTTTCTGTGGAGGCGTGATAAGCATGATGC
ATAGGCCATGAAATGCAACACGGAGTCCCTCTCGGCCATCTCGTCTTTAC
AACGGTCTTTTTCTGGGGTCAGGCGATCTTTTTCAAGGATGAGGGCGCAA
AGGCGGTGAACGCACATCATCGGCGTCTGTCGGGCGACAACGCCGCCGGA
TCGCTGCTTGCACCGCTGCTGATGGTGGTGGCGATGATCGCAGTGGGGTG
GGGCGTTGCCTGCATGGCGCTGTACTCTCTTGCTAGCTGCCCCAAGCGCA
TTCTTCAGGTGAATTTCTCACGGGGCTTCCCTTTTTCTGGTGCCTCGTTC
GTGTCGTCGTCGCGCCTTGTCGTCGTCTGTCTAGCTGTTGACTCCGTTAG
TCCGCATCACGGATACGGTTTGCTTGTCCGTTGTTTCAACTCGTGGACCT
TGTTCGTCTAACACACGTGGACCAAGACGGACATCCTTTTGAGTTGGTGT
TTGCACGTATGTAGCGCGCGTTTCTGTTTTGTGTGCTGCTGTAACAACCA
GTTCTTTCGATCGATCAGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTTTGTTGCTGTTGTCTTCAAATTAATGACCGTTCCGT
TCTCTCCACCCACAACCTTCTGCGATCCGCACTAGTCTAATACTTGACGC
GGTCGATTTCTGTGGTTACAATTTAATTTACCCAACAAAGGTGTTCCGAA
ATGTGACCCCGAAGGGTGCGCAAGTCAAAAATAAATTCACGACGGATAGT
CACGTGGCCAATTTTTTTGTGTGTGAGCAGCAGCAGTACCGCTGTATTTC
CAGTACAGCTTGATTCACAGTGGACGGCCCCTTCTCTCGTCGTTCACGTC
CCGGGAAGTCACCGATTAATTCCTTCAGCGTCTCGCCACAACGTAGGGCA
AACGTGTACGGGTTTCAGTGTCCCTCCCCTCCACCTCTAGGAAGGAACGA
TTGGACATCAGTGATCGGTCCTGGAACAAAGCTCCGTCCTCTCCAGGACG
CGTGGTCAAACGTCCCACCGCTAAGGCATGCGGCCCATGAGTACGCTCCC
ACCCCAGCAACAACGCCCCGTACTCTCTCCTGATCCGCTATTTTCTTGTT
TTTTTCCGTGCCATGTATACATGTGCCCAGGTCGCGTACGTGGGCTTTGC
GGGCATCTGGGGCGTGGCAGCGGTAGCTGCCCTGTGGAATGGCATCACGG
TCATTGCGGTAGTGTGCGCTTTTGTGTGCGCCATCGTCGCGTGGGTGTTC
TGGAAGAACCAGAGTCGCCTTCGTTTCGGCGCGGCCAATCTCAAGGTAGG
TGTGGGGAAGCACTATAATAGTGTTTCCGAGTGAGAGTTGTGATGTATGT
GTTTCAGTTGTTTACATTAGAACGTTATTACTTTTGGTGGTCTGGTCAGA
AAATTAGTCTGCGGGAGTCAATACGCTTCGTGTCTCCCTCACGGAATTCA
TAGCATCTGCAGACGATATGAAACCCCCGATGTAGGTGGAGTGATATATC
TCTCCGTGGTTTTGCCTTCCCAGACTGTCTCACACATGAACTGCCCACGA
CACCTCCCTCTCTGTGACACATGTATTCCACCACCACACACCACTGCTTT
CCCTCTTGGCACACGACAACAATGGCCATGGCGATACAAGTAGGTGGCCG
CCCTTGCGGTGAGGTCCATGCCTGGGACGATCCGCTTGGCCCTCTTCATG
AGCGCCGTCCAGGTGGTCTGGTCCATGCTCTCGGTCTCGGCTGCGGGGGG
CTCCTTCGCCGCATTTTCGCCCGTGGTCGTGGGTGCCGACGGCACCACCT
ACTCGTCCCTGGAGTGTCAGGTAGAGTCTATGCGGCGTTGGAGAACGGAC
CGGGGAAGGACCATCTATTAATTTTTATTGTCGAATGTCGAAAGTTTCCA
ACAGTTATTTTTTTGTTCGATCGATGTTTTTGGATTGTTTGTCAGGTGGT
GTAGACAACGATACAGCCGCAAGCCCTTTATGAGGTATGCGCCAGACCGA
TTCACCTTCCTGATCCAAAGTGATGGAACAACTTGATTCTTCCGTCGGTG
CCAGTCAATTTTGCACGCCTCACATAGGGCACCCGCCTATTACCCGCCTT
CGACTGTATAGTCCAGGGGTTTCGCGTCGCGTTTCGAAAGTTACCACAAT
TTGTAATTGTTTAGTACGATTATTTCGGATGTTCGTCGAGTGGGGGGGAC
GACTCAATGGGGATCTCGTGTCGAATCACGTAATACACCCACCAGTTATT
CATGTTCGATCGATCGTTTGTCGGGGGGTGGTCTTCTTGTTTCCCCCCCC
CCCACCCCCAGGGCAAGCTGTGAGCTACTTGAAACAAGAAGTCGTTGGGG
TGAAAACATTATTGCGGCGCAATTTTCTTGTAAGCACCTTTTCGACCACA
ACCGCTGGAGCGCGAGACTTTTGTCACAACGCCAGAGAGCCTCCACCCAC
ACTCGCGTACCTTCGTCTCCCCAGGACATTGTCACTTCCTCCTCGCCCTA
CGGCGGCGGCGAAACTACCGCCGGTTCAGGCCTCTCGTGCCACTGCGGCG
GCGAGGTGATCTATAGCGACTCCGGGTGCGAATTCAGCGGCGGATTCCCG
CGCTGGGTGCTGGCGGCCTTCTGGCTGGGGAGCGTCACCTGGGTGATCGC
CGTCCTGCGCAACGTCGTGACGGCTACGGTAGCCGGCTCCGTGGCCTCTT
GGTGGTTCTCCCCGGGAGACACGAGCTCCGTGCGCGGTGCCTTCTACCGC
GCCACACACAGCTCGTTCGGGTGAGAGACACGGTGGGCGTGGTGGTGACG
CCGCGGCTCGGCCGGGGTTGACGAAGAAGGGTCGTGAGATCTAGACTTGT
TGTCTGCACGACGGGAGGTCGTCGTTGTTTTTTTCTTGGAAGTCTGCGAG
TGATGTTGTGCTCACCCGTTTTTTTCCGAGGGTCACTCTCGCTCTCATGC
TCACACCGGCGCGCCTCTTTCCCGGAACGGTAATAGTTCCAAATAGCTTT
GTTCCCGTCACTAGCAGTGGTTTGCTTCGAACCGCGATTCCGTTAAATGA
GGAACACTCTCTTGCACTGTATACCATCCGAAACATGTCGGCTTACAACA
GCTTGAAACGACCCCGCCTGAGGACTGAAACGACTTCACGATACCTCATG
ACTAGGCCAAGGGAAGCGGCGTGCACATGGTTACTAACATGTTGATCTTC
CCCAAATAAGAATCTGAGGCGCATTCCGATTTCGGTTCCTACCTCTGGAT
TTAGAAATATCATCACCAATCGAACCGCGGTCGAGGGTGCTGCCGACGTG
GACAGATTGCTTGCGGCTGTAACGTGGCGTACCTTCACAGCTGATCGCGG
AGCCTATCGCGAGTCTTTCGCCCTTGCTCGGAGATAGTATGCACGTTCGG
TTGGGCGTACTGCCGTCGGCTGGCCCGTTGATTTTTTTCCTTCACGGTCC
TTCGCCTCGACTGGACAGTTCGTCGCTGAAAAGAGGCATTTCCACTTGCA
GAGGCTTCAAACGCCACCCATTCATTCATTCCCGGGCTACCCTTCCCGTT
CCCGTCGCGTGCACCGCCTTGCGTGAGGCCGAACCGCCCTAACCTCTTGC
GGCATTTTCTCTCGCATGTTCGCTCCAGGTCCTTGTGCAAGGCTGCTGCG
ATCGTGGCCGTGATACGGGTGGCCATGTTCCCCCTACGCCTGGTCTCCCA
CGCTCCCTGCCTCAGGTGTTTCCTCCGCAGGTTTCAGGAGGTCGTCGGCT
ACGCTTCCGCCTACGCCATCTGCTTCATCGGCATCTACGGCTTGGATTTC
TCGGAAGGTGCGGGGGCGCACCCAATATCCCGCACTAATTGGAGTTTTGA
TTATCAGCCCATGGGTAGCCCTTCCGATGGGCTGCCGAAAGGCACTTCAT
GGGCTCCCCATGCGCTGCTTACGGGCGTGACACTATTCACACTCGTGGTT
CGGAATGTCGTCCCACTCGGAGCACAGAACACTTGGATTACAAGTTATGT
CTTTTACATGTCGTGTCTGAGGCTGCAGGCCAAGTCTCTCTCAGCCCCCT
CGTGGCGGTAGATAGTTGGCTTTCGTTTGCAGACGGAGCACTGCACGGAG
CTGGGAGCTAATGCGGCACCCGTTCATCTAAACCGGACAGGCTGAGACCT
TCAGCGAAACCACACCCAGTCGTATTCGCTGACTGGTCTCATGGTTCGAT
TTCGATTGCTAAAGGTTTCATCATTGCCGCGTGAAGGGTGGCTCATGCGC
TGTGAATCCGCGCTTAGCTCGTCTGGCCTGCGCCTCTTCCCCATACAATC
AGCCATAATAATCAGGGGTATGGATGCCTACGCCTCTTCCCCGTTCAATC
AGCCATAATAAATCAGGGGCATGGATTCCTAGTATCAGTAACAAACATCT
CTACACTATCTTTGGCAACGAACCGAGCTTCCGTCCATCACGATGCCGGA
ACGCTTCTCATGCAAGCAGCCCTTCGACGAGTGCACGAGTTGTTCCAGAG
GCGCGGGATAACAATGATCGCCAACGACGGCGTCGTGGGTGTCGGGCTGT
TCCTGCTCACCATGGGCCTGATGTCTACCTACTGGGTCGTCATGTGCTCG
AGTCTGGTGATGTTGACGGGCGCGCAGTTCTCCGGCGGCTTGGACGGCGT
CATCATGTTCGTGGCCGTGGTGTTTGTCTTCGTGCCGGTGGCGGTGTACT
TCTCGACCACCATGTCCGTCTTGCGCTCCGGCCACAAGGCCGTCTTCGTC
TGCTTCGTGCAGGTGGGAAAGCGAACGGATGCATCTACATGTGTAAAGAT
TTGTGAATCCTTCCCCAGAATCTCAAGAATAAGAACTCTTGTTGGACTGT
ACGACGATGTGCGTACGTCAGTGTCAAGCACCCTGCGCGAATATTTGTCA
CTTGCTCTGATAAATGGTACTGTGCTCTCGTTGTTCTTCTCCCTCTCGCT
TTCGCTTCCAGTCGACCTGCATAATACATGACCACCACGCGTCGTCGTTT
TCCAATCTCGAAAGATTCGAAGCCCGTGTGACTGTTGCCACGTGGTTGTT
TACGCGCCGTCCTGGTTCTTTCGCTTCGCTGTTCAGAACCCTGAGGCGCT
CGCCAACAACCACTGCAGCCAGACGTACGATGACCTCTCTGGGGCGTGGC
AGCAGATGCAGACAGAGTGCCCCGGGGTGGCCAGTAGCAACATCCACGTG
CCGATCGCGACAAGCCCAAAGATGGTCGAGATGCACGACCACCGGACCAC
CACCCACACCGAATATCAAGTATGACGTGTACATCGATAATGTCTGGTTG
GGTGCATGCCGATGTCACCAACAATGATGAGGTGTACGGCGCCCGCGCCC
AGTCTGGCCGCCACAACAACAACACGCCCGTGTTGACGGTTTCTTTTGAA
GTGTACCAGTAAAACAGGTACAGCATGAGGTGGAACTAAAGATCTGAGCG
GAAGAGGGAATCCCTTGTCAATGACAGTGCAAGACGGAGTTCGGTCTTCG
AGCGTAGACTAAGTGGCGAGTGAAGTGGCAGACGATGAGATTGAGAGGAT
AGCAGTGCCTGATTCGATTTACCTGCAGCAGTACTGTAGTGGAGTACCGG
CTGGACGTTTGTTGTAGTTCAGCAGTTAGACTTCACATGAAGTTCGGCAA
TGAAAACTATGTCCTGTGTTTCTTCACCTCTACAAGCCGGTCTGGAAGGG
CAGGAAATGGCATGCCGATGGCGGTGTCCGCAGTTATCACCGTCAACGGC
ATCAAACGTGCACCCTTTCGAATCTTCTCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1846:3852..14532-

>mRNA_Ecto-sp13_S_contig1846.5754.1 ID=mRNA_Ecto-sp13_S_contig1846.5754.1|Name=mRNA_Ecto-sp13_S_contig1846.5754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1695bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1846:3852..14532- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGGGCTGCAAGAGCAGCAATGGCGGACTCGGGCTTATTTCTGTC
AGACCGCAACCGCGATGAGGAAGACAATAACACCCTTACGGGCGTAGAGA
ACGGCGCGGACTTCGGCGTTTCGCAACGGAGCATCACTCCCCCGACGGTC
CCGATGGACAGGGCTTGGGCTATCGCCTTTTGGGTTAACGTGTGCATCAC
CGTCCTGTCCGCGATCTTTTTCAAGGATGAGGGCGCAAAGGCGGTGAACG
CACATCATCGGCGTCTGTCGGGCGACAACGCCGCCGGATCGCTGCTTGCA
CCGCTGCTGATGGTGGTGGCGATGATCGCAGTGGGGTGGGGCGTTGCCTG
CATGGCGCTGTACTCTCTTGCTAGCTGCCCCAAGCGCATTCTTCAGGTCG
CGTACGTGGGCTTTGCGGGCATCTGGGGCGTGGCAGCGGTAGCTGCCCTG
TGGAATGGCATCACGGTCATTGCGGTAGTGTGCGCTTTTGTGTGCGCCAT
CGTCGCGTGGGTGTTCTGGAAGAACCAGAGTCGCCTTCGTTTCGGCGCGG
CCAATCTCAAGGTGGCCGCCCTTGCGGTGAGGTCCATGCCTGGGACGATC
CGCTTGGCCCTCTTCATGAGCGCCGTCCAGGTGGTCTGGTCCATGCTCTC
GGTCTCGGCTGCGGGGGGCTCCTTCGCCGCATTTTCGCCCGTGGTCGTGG
GTGCCGACGGCACCACCTACTCGTCCCTGGAGTGTCAGGACATTGTCACT
TCCTCCTCGCCCTACGGCGGCGGCGAAACTACCGCCGGTTCAGGCCTCTC
GTGCCACTGCGGCGGCGAGGTGATCTATAGCGACTCCGGGTGCGAATTCA
GCGGCGGATTCCCGCGCTGGGTGCTGGCGGCCTTCTGGCTGGGGAGCGTC
ACCTGGGTGATCGCCGTCCTGCGCAACGTCGTGACGGCTACGGTAGCCGG
CTCCGTGGCCTCTTGGTGGTTCTCCCCGGGAGACACGAGCTCCGTGCGCG
GTGCCTTCTACCGCGCCACACACAGCTCGTTCGGGTCCTTGTGCAAGGCT
GCTGCGATCGTGGCCGTGATACGGGTGGCCATGTTCCCCCTACGCCTGGT
CTCCCACGCTCCCTGCCTCAGGTGTTTCCTCCGCAGGTTTCAGGAGGTCG
TCGGCTACGCTTCCGCCTACGCCATCTGCTTCATCGGCATCTACGGCTTG
GATTTCTCGGAAGCCCTTCGACGAGTGCACGAGTTGTTCCAGAGGCGCGG
GATAACAATGATCGCCAACGACGGCGTCGTGGGTGTCGGGCTGTTCCTGC
TCACCATGGGCCTGATGTCTACCTACTGGGTCGTCATGTGCTCGAGTCTG
GTGATGTTGACGGGCGCGCAGTTCTCCGGCGGCTTGGACGGCGTCATCAT
GTTCGTGGCCGTGGTGTTTGTCTTCGTGCCGGTGGCGGTGTACTTCTCGA
CCACCATGTCCGTCTTGCGCTCCGGCCACAAGGCCGTCTTCGTCTGCTTC
GTGCAGAACCCTGAGGCGCTCGCCAACAACCACTGCAGCCAGACGTACGA
TGACCTCTCTGGGGCGTGGCAGCAGATGCAGACAGAGTGCCCCGGGGTGG
CCAGTAGCAACATCCACGTGCCGATCGCGACAAGCCCAAAGATGGTCGAG
ATGCACGACCACCGGACCACCACCCACACCGAATATCAAGTATGA
back to top