mRNA_Ecto-sp13_S_contig18457.5751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18457.5751.1
Unique NamemRNA_Ecto-sp13_S_contig18457.5751.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18457.5751.1 vs. uniprot
Match: D7FVJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ6_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 5.440e-140
Identity = 222/249 (89.16%), Postives = 233/249 (93.57%), Query Frame = 1 
Query:    1 FIVGGVLTAELVVFFVASRITAVINQATSIEIGRPGSPSSRAFYFKAKRNLWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIILETLQILTGHGGAITFSSATSFDRASGKKRNSAVDTSGVPWSRRISAAQMGVVSARASEAAPSAMIARIKSMNPKTKGKAESTELVQAEEQGEMSKGSRRSGSIGEDAIEVVPFVQRSSGSFGVDCIRHLPHPKAARVIPICVPLTAISISSDETSTSSITAGRN 747
            FIVGGVLTAELVVFFVASRITAVINQATS  +GRPGSPSSRAFYFKAKRN+WIQAAALCGVGCFPMLVIAIKRLTMAGRSTPII+ETLQILTGHGGAI FSSATSFDRASG +RNSAVDTS VPW RRIS A+MGVVSA ASEAAPSAMIARIKSM+PK KGKA++TELVQAEEQGE+SKGSR S SIGEDAIEVVPFVQRSSGSFG  CI H PHPKAARVIPI VPLTAIS+SSDETSTSS+TAGRN
Sbjct:  118 FIVGGVLTAELVVFFVASRITAVINQATSTAMGRPGSPSSRAFYFKAKRNMWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIIIETLQILTGHGGAIMFSSATSFDRASGMRRNSAVDTSRVPWRRRISVARMGVVSAVASEAAPSAMIARIKSMDPKKKGKAKTTELVQAEEQGEISKGSRMSCSIGEDAIEVVPFVQRSSGSFGAVCIHHPPHPKAARVIPISVPLTAISVSSDETSTSSMTAGRN 366
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BLAST of mRNA_Ecto-sp13_S_contig18457.5751.1 vs. uniprot
Match: A0A6H5KTI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI4_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.110e-72
Identity = 129/150 (86.00%), Postives = 137/150 (91.33%), Query Frame = 1 
Query:  298 FSSATSFDRASGKKRNSAVDTSGVPWSRRISAAQMGVVSARASEAAPSAMIARIKSMNPKTKGKAESTELVQAEEQGEMSKGSRRSGSIGEDAIEVVPFVQRSSGSFGVDCIRHLPHPKAARVIPICVPLTAISISSDETSTSSITAGRN 747
            FS+ATSFDR SG KRNSAVDTSGVPWSRRISAAQMGVVSA ASEAAPSAMIARIK MNPK KGKAE+TELVQ EE+GE SK S RSGSIGEDAIEVV FVQRSSGSFG DCIRH PHP+AARV+PI VPLTA+S+SSDETSTSS+TAGRN
Sbjct:    2 FSAATSFDRGSGTKRNSAVDTSGVPWSRRISAAQMGVVSAIASEAAPSAMIARIKRMNPK-KGKAETTELVQTEEKGETSKDSCRSGSIGEDAIEVVTFVQRSSGSFGADCIRHPPHPRAARVLPISVPLTAVSVSSDETSTSSMTAGRN 150
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BLAST of mRNA_Ecto-sp13_S_contig18457.5751.1 vs. uniprot
Match: A0A6H5KVX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.830e-23
Identity = 57/90 (63.33%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 FIVGGVLTAELVVFFVASRITAVINQATSIEIGRPGSPSSRAFYFKAKRNLWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIILETLQI 270
            F+VGG+LTA                          GSPSSR FY KAKRNLWIQAAAL GVGCFPMLVIAIK LTMAGRSTPIILETLQ+
Sbjct:  102 FVVGGILTA--------------------------GSPSSRTFYSKAKRNLWIQAAALSGVGCFPMLVIAIKLLTMAGRSTPIILETLQV 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18457.5751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVJ6_ECTSI5.440e-14089.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTI4_9PHAE1.110e-7286.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVX1_9PHAE5.830e-2363.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18457contigEcto-sp13_S_contig18457:1880..3484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size771
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003550.1
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.3173287-CDS-Ecto-sp13_S_contig18457:1879..23831681462948.3173287-CDS-Ecto-sp13_S_contig18457:1879..2383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18457 1880..2383 -
1681462948.3297353-CDS-Ecto-sp13_S_contig18457:2605..27671681462948.3297353-CDS-Ecto-sp13_S_contig18457:2605..2767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18457 2606..2767 -
1681462948.3467433-CDS-Ecto-sp13_S_contig18457:3036..31141681462948.3467433-CDS-Ecto-sp13_S_contig18457:3036..3114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18457 3037..3114 -
1681462948.3561752-CDS-Ecto-sp13_S_contig18457:3457..34841681462948.3561752-CDS-Ecto-sp13_S_contig18457:3457..3484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18457 3458..3484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18457.5751.1prot_Ecto-sp13_S_contig18457.5751.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18457 1880..3484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18457.5751.1

>prot_Ecto-sp13_S_contig18457.5751.1 ID=prot_Ecto-sp13_S_contig18457.5751.1|Name=mRNA_Ecto-sp13_S_contig18457.5751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
FIVGGVLTAELVVFFVASRITAVINQATSIEIGRPGSPSSRAFYFKAKRN
LWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIILETLQILTGHGGAITF
SSATSFDRASGKKRNSAVDTSGVPWSRRISAAQMGVVSARASEAAPSAMI
ARIKSMNPKTKGKAESTELVQAEEQGEMSKGSRRSGSIGEDAIEVVPFVQ
RSSGSFGVDCIRHLPHPKAARVIPICVPLTAISISSDETSTSSITAGRNK
AAESIV*
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mRNA from alignment at Ecto-sp13_S_contig18457:1880..3484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18457.5751.1 ID=mRNA_Ecto-sp13_S_contig18457.5751.1|Name=mRNA_Ecto-sp13_S_contig18457.5751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18457:1880..3484- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTATTGTCGGTGGCGTCCTAACCGCGGTGAGGTGTCGTGGAATATCTTG
GTGCATCACTGCTCAAGTGTCATGACTCCTTGACTTTGTGCATCGTTCAA
CCCGGTATTATCAATATTGATGTCTCGGGCGCACGACTTTCTAGAGGAAG
AATCTCTGCGACCGTGGAGACCTGTGCCCGTGGCCATCACCCCACCAAGC
TTGAAACCACCAACACCAGAGCGGCAGCAGTCATACTAGCAGGGTGATGC
GCAAAACCAAACAAACAGCCGATGACGGTTCAGATTGATCACCTTTCAAT
CTGGGACCTGACGGTTACTATCAATAAAACATTTCTTGAAACTCGTCTAG
CGTCTCGCCGTCTCGACCAGGAATTGGTCGTGTTCTTCGTGGCTTCAAGA
ATAACGGCGGTCATCAACCAAGCCACCTCAATAGAGATCGGAAGGCCTGT
AAGTCGTTTACAAGCTTGCGTTCTAACTATTTCGCTGCGCATGCACATAG
GGTAGTGCCGGGGACACATTCCACTGTGAATTGATGGCGACGCAATTACT
ATGCATGCGCAAGGACAGGAAACGTTCCACGAAAGAATGCCACACTCTTC
CTACGCACATGTGGCAATCTCTTTGACAGATTGACACCGTAAGCGAAAGT
TGGCGTCCATCTGTCCTATTCATGCAAGAGCGCGCCCACAAACATTTGAG
TGTCTCCTCCGAGCCAGGGCTCACCTTCCTCGAGGGCTTTCTATTTTAAG
GCCAAGAGGAATCTGTGGATACAAGCTGCGGCGTTGTGCGGTGTAGGCTG
CTTCCCTATGCTCGTTATCGCCATAAAGCGCCTCACCATGGCTGGACGAA
GTACCCCTATCATCCTAGAGACACTGCAGGTGAAAGGAAGCGTCGGTTTT
ATCGTATGTGCGTCCGCCCGAAGGTTTCGATAGCTCACGTATGTATGTGG
TCAAACGCAACGCCTCATTGTGTTCTGCAGGGCTTACATTCAACCACCTT
GCCCATCCCCGCTGCCCTCCTCCCGCTTCCGCATTTTTGTCGAGTGTGTC
GTAACGGTTAAACGTGTACACGACGTATGTTCCTTGATCTCGTCCGCTCA
GATTTTGACCGGCCATGGTGGTGCGATCACGTTCTCTTCGGCTACTAGCT
TTGACCGGGCTTCTGGAAAGAAGAGGAATTCAGCCGTCGATACCTCCGGC
GTACCATGGAGTCGCCGTATCTCTGCGGCTCAAATGGGCGTAGTTTCAGC
CAGAGCTTCAGAGGCAGCGCCATCAGCCATGATCGCGAGGATCAAGAGCA
TGAATCCGAAGACGAAGGGGAAAGCGGAATCGACGGAACTGGTGCAGGCT
GAAGAGCAGGGCGAGATGTCGAAGGGTAGCCGCAGGAGTGGCAGTATTGG
GGAGGATGCGATCGAAGTCGTCCCGTTTGTTCAACGCAGTTCCGGGTCTT
TCGGTGTCGATTGTATCCGCCACCTACCGCACCCTAAGGCAGCAAGAGTG
ATACCGATTTGTGTGCCGTTGACGGCTATTTCCATAAGTAGCGACGAGAC
GAGTACAAGTAGCATAACCGCCGGACGCAATAAGGCCGCCGAGAGTATTG
TGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18457:1880..3484-

>mRNA_Ecto-sp13_S_contig18457.5751.1 ID=mRNA_Ecto-sp13_S_contig18457.5751.1|Name=mRNA_Ecto-sp13_S_contig18457.5751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18457:1880..3484- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTATTGTCGGTGGCGTCCTAACCGCGGAATTGGTCGTGTTCTTCGTGGC
TTCAAGAATAACGGCGGTCATCAACCAAGCCACCTCAATAGAGATCGGAA
GGCCTGGCTCACCTTCCTCGAGGGCTTTCTATTTTAAGGCCAAGAGGAAT
CTGTGGATACAAGCTGCGGCGTTGTGCGGTGTAGGCTGCTTCCCTATGCT
CGTTATCGCCATAAAGCGCCTCACCATGGCTGGACGAAGTACCCCTATCA
TCCTAGAGACACTGCAGATTTTGACCGGCCATGGTGGTGCGATCACGTTC
TCTTCGGCTACTAGCTTTGACCGGGCTTCTGGAAAGAAGAGGAATTCAGC
CGTCGATACCTCCGGCGTACCATGGAGTCGCCGTATCTCTGCGGCTCAAA
TGGGCGTAGTTTCAGCCAGAGCTTCAGAGGCAGCGCCATCAGCCATGATC
GCGAGGATCAAGAGCATGAATCCGAAGACGAAGGGGAAAGCGGAATCGAC
GGAACTGGTGCAGGCTGAAGAGCAGGGCGAGATGTCGAAGGGTAGCCGCA
GGAGTGGCAGTATTGGGGAGGATGCGATCGAAGTCGTCCCGTTTGTTCAA
CGCAGTTCCGGGTCTTTCGGTGTCGATTGTATCCGCCACCTACCGCACCC
TAAGGCAGCAAGAGTGATACCGATTTGTGTGCCGTTGACGGCTATTTCCA
TAAGTAGCGACGAGACGAGTACAAGTAGCATAACCGCCGGACGCAATAAG
GCCGCCGAGAGTATTGTGTAG
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