mRNA_Ecto-sp13_S_contig18327.5690.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18327.5690.1
Unique NamemRNA_Ecto-sp13_S_contig18327.5690.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 1.130e-133
Identity = 248/264 (93.94%), Postives = 250/264 (94.70%), Query Frame = 1
Query:    1 PPAAGGAPPAAASGQSAAGKSLTFALDKAQRRMVASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEILELLKSSDPLRTHSELDRQVTRYIXXXXXXXXXXXXXXXXXXXXQSMREGGVHEGPLEPKAEEFRSWEVIKPMLEGYKTLPELLAARPPDYSPPGFWELFEAETHATKSESAGQLAEAVQ 792
            PPAAGG       GQSAAGKSLTFALDKAQRRMVASLRQAFR+ADVNGDGNLDR EVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSG LDAGEILELLKSSDPLRTHSELDRQV+ YI   XXXXXXXXXXXXXXXXXQSMREGGVHEGPLEPKAEEFRSWEVIKPMLEGYKTLPELLAARPPDYSPPGFWELFEAETHATKS SAGQLAEAVQ
Sbjct: 1181 PPAAGGXXXXXXXGQSAAGKSLTFALDKAQRRMVASLRQAFRLADVNGDGNLDRAEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGSLDAGEILELLKSSDPLRTHSELDRQVSGYIEAVXXXXXXXXXXXXXXXXXQSMREGGVHEGPLEPKAEEFRSWEVIKPMLEGYKTLPELLAARPPDYSPPGFWELFEAETHATKSGSAGQLAEAVQ 1444          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: A0A6H5K9E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E5_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 4.340e-108
Identity = 218/264 (82.58%), Postives = 220/264 (83.33%), Query Frame = 1
Query:    1 PPAAGGAPPAAASGQSAAGKSLTFALDKAQRRMVASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEILELLKSSDPLRTHSELDRQVTRYIXXXXXXXXXXXXXXXXXXXXQSMREGGVHEGPLEPKAEEFRSWEVIKPMLEGYKTLPELLAARPPDYSPPGFWELFEAETHATKSESAGQLAEAVQ 792
            PPAAG        GQSAAGKSLTFALDKAQRRMVASLRQAFR+ADVNGDGNLDR EVE                              DGT+TLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSG LDAGEILELLKSSDPLRTHSELDRQVTRYI XXXXXXXXXXXXXXXXXXXQSMR GGVHEGPLEPKAEEFRSWEVIKPMLEGYKTLPELLAARPPDYSPPGFWELFEAETHATKS SAGQL EAVQ
Sbjct: 1238 PPAAGXXXXXXXXGQSAAGKSLTFALDKAQRRMVASLRQAFRLADVNGDGNLDRAEVE------------------------------DGTDTLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGSLDAGEILELLKSSDPLRTHSELDRQVTRYIEXXXXXXXXXXXXXXXXXXXQSMRVGGVHEGPLEPKAEEFRSWEVIKPMLEGYKTLPELLAARPPDYSPPGFWELFEAETHATKSGSAGQLVEAVQ 1471          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: A0A0D1YVM1_9PEZI (Uncharacterized protein n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D1YVM1_9PEZI)

HSP 1 Score: 60.5 bits (145), Expect = 8.180e-8
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  100 VASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEILELLKSSDPLRTHSELD 483
            +A  R+AF++ D NGDG +  EE+  ++R    GQN  PT TE +    IA LD D +  +D DEF   M + +T G        A    L +AF   D DGSG + A E+ EL+ S     +  E+D
Sbjct:   10 LAEYREAFKIFDKNGDGQITAEELGEIMRS--LGQN--PTATELQ--DIIAELDIDNSGAVDFDEFIRMMGQKLTSGG-------AEDDELLQAFKVFDKDGSGTISAQELKELMISIGESLSKDEID 124          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: A0A7L4GDI1_PODST (CALMS protein (Fragment) n=1 Tax=Podargus strigoides TaxID=8905 RepID=A0A7L4GDI1_PODST)

HSP 1 Score: 57.4 bits (137), Expect = 1.010e-6
Identity = 36/131 (27.48%), Postives = 66/131 (50.38%), Query Frame = 1
Query:  100 VASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEILELLKSSDPLRTHSELDRQV 492
            +   ++AF + D +GD  +  +E+  ++R      +L    TEAE+L  +  +DADG+ T+D  +F S M R M D           ++ + +AF   D DG+G++ A E+  ++ +     T  E+D  +
Sbjct:   10 ITEFKEAFSLFDWDGDSCITTKELGTVMR------SLGQNPTEAELLDMVGKVDADGSGTVDFPKFLSLMARKMRDTDS--------KEEIREAFRVFDKDGNGYISAAELRHIMTNLGEKLTDEEVDEMI 126          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: UPI001C7B8EB2 (Uncharacterized protein n=9 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7B8EB2)

HSP 1 Score: 56.6 bits (135), Expect = 3.350e-6
Identity = 38/117 (32.48%), Postives = 61/117 (52.14%), Query Frame = 1
Query:   82 KAQRRMVASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEI 432
            K  +  V    +AF++ D +G+G +   E+ +++R      +L    TEAE+++ I  +DADG+ T+D  EF   M + M D   E        + L KAFD  D D +GF+ A E+
Sbjct:    4 KLPQEQVNQFNEAFKLFDKDGNGRITTGELGSVMR------SLGQNPTEAELVEMIKEVDADGSGTVDSSEFLKLMEKKMMDSNFE--------EELRKAFDVFDNDQNGFITAAEL 106          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: A0A8J5TCF3_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5TCF3_ZIZPA)

HSP 1 Score: 55.5 bits (132), Expect = 8.950e-6
Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 1
Query:   79 DKAQRRMVASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEI 432
            D+     VA  ++AF + D +G+G++  +E+  ++R      +L    TE E+   IA +DADG+ T+D  EF   M R M D   E        + L +AF   D +  GF+ A E+
Sbjct:    3 DQLTEEQVAEFKEAFSLFDKDGNGSITTDELGTVMR------SLGQNPTEVELKDMIAEVDADGSNTVDFQEFLGLMARKMKDTDSE--------EELREAFRVFDKNQDGFISADEL 106          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: J3N5U2_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3N5U2_ORYBR)

HSP 1 Score: 54.7 bits (130), Expect = 1.530e-5
Identity = 35/119 (29.41%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   76 LDKAQRRMVASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEI 432
            +++  +  +A  R+AF + D +GDG +  +E+  ++       +L    TEAE+ + +A +DADG+ ++D DEF S + R + D   E          +  AF   D D +GF+ A E+
Sbjct:    1 MEQLSKEQIAEFREAFSLFDKDGDGTITSKELGTVMG------SLGQQPTEAELQEMVAEVDADGSGSIDFDEFLSLLARKLRDTEAE--------DDIRDAFRVFDKDQNGFITADEL 105          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: G2XM43_ORYBR (Hypothetical_protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=G2XM43_ORYBR)

HSP 1 Score: 54.7 bits (130), Expect = 1.650e-5
Identity = 35/119 (29.41%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   76 LDKAQRRMVASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEI 432
            +++  +  +A  R+AF + D +GDG +  +E+  ++       +L    TEAE+ + +A +DADG+ ++D DEF S + R + D   E          +  AF   D D +GF+ A E+
Sbjct:    1 MEQLSKEQIAEFREAFSLFDKDGDGTITSKELGTVMG------SLGQQPTEAELQEMVAEVDADGSGSIDFDEFLSLLARKLRDTEAE--------DDIRDAFRVFDKDQNGFITADEL 105          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: UPI001ADC9B27 (calmodulin-A isoform X1 n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADC9B27)

HSP 1 Score: 54.7 bits (130), Expect = 1.840e-5
Identity = 35/119 (29.41%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   76 LDKAQRRMVASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEI 432
            +++  +  +A  R+AF + D +GDG +  +E+  ++       +L    TEAE+ + +A +DADG+ ++D DEF S + R + D   E          +  AF   D D +GF+ A E+
Sbjct:    1 MEQLSKEQIAEFREAFSLFDKDGDGTITSKELGTVMG------SLGQQPTEAELQEMVAEVDADGSGSIDFDEFLSLLARKLRDTEAE--------DDIRDAFRVFDKDQNGFITADEL 105          
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Match: A0A453KB76_AEGTS (Uncharacterized protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A453KB76_AEGTS)

HSP 1 Score: 52.8 bits (125), Expect = 4.580e-5
Identity = 35/125 (28.00%), Postives = 64/125 (51.20%), Query Frame = 1
Query:   76 LDKAQRRMVASLRQAFRMADVNGDGNLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEILELLKS 450
            +D+  +  +   R+AF++ D +GDG +  +E+  ++R      +L    TE E+   +  +DADG+ T+D +EF   + R M  G  E        + L +AF   D D +GF+   E+  ++K+
Sbjct:    1 MDELSQEQIQEFREAFKLFDKDGDGTITTKELGTVMR------SLGQHPTEGELKDMVEEVDADGSGTIDFNEFLGLVARQMR-GDAEA------EEELHEAFRVFDKDNNGFISLDELRTVMKN 112          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18327.5690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LB75_ECTSI1.130e-13393.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9E5_9PHAE4.340e-10882.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0D1YVM1_9PEZI8.180e-836.72Uncharacterized protein n=1 Tax=Verruconis gallopa... [more]
A0A7L4GDI1_PODST1.010e-627.48CALMS protein (Fragment) n=1 Tax=Podargus strigoid... [more]
UPI001C7B8EB23.350e-632.48Uncharacterized protein n=9 Tax=Carya illinoinensi... [more]
A0A8J5TCF3_ZIZPA8.950e-631.36Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
J3N5U2_ORYBR1.530e-529.41Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]
G2XM43_ORYBR1.650e-529.41Hypothetical_protein n=1 Tax=Oryza brachyantha Tax... [more]
UPI001ADC9B271.840e-529.41calmodulin-A isoform X1 n=1 Tax=Oryza brachyantha ... [more]
A0A453KB76_AEGTS4.580e-528.00Uncharacterized protein n=5 Tax=Triticinae TaxID=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18327contigEcto-sp13_S_contig18327:541..2801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score434.5
Seed ortholog evalue3.6e-119
Seed eggNOG ortholog2880.D8LB75
Model size795
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K02183,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04144,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00970,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04144,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5043@1,COG5126@1,KOG0027@2759,KOG1809@2759
EC6.1.1.5
Cds size792
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.9703524-CDS-Ecto-sp13_S_contig18327:541..7211681462943.9703524-CDS-Ecto-sp13_S_contig18327:541..721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18327 542..721 -
1681462943.9829242-CDS-Ecto-sp13_S_contig18327:1134..12571681462943.9829242-CDS-Ecto-sp13_S_contig18327:1134..1257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18327 1135..1257 -
1681462943.995109-CDS-Ecto-sp13_S_contig18327:1662..19001681462943.995109-CDS-Ecto-sp13_S_contig18327:1662..1900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18327 1663..1900 -
1681462944.0044339-CDS-Ecto-sp13_S_contig18327:2092..21681681462944.0044339-CDS-Ecto-sp13_S_contig18327:2092..2168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18327 2093..2168 -
1681462944.0126226-CDS-Ecto-sp13_S_contig18327:2626..28011681462944.0126226-CDS-Ecto-sp13_S_contig18327:2626..2801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18327 2627..2801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18327.5690.1prot_Ecto-sp13_S_contig18327.5690.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18327 542..2801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18327.5690.1

>prot_Ecto-sp13_S_contig18327.5690.1 ID=prot_Ecto-sp13_S_contig18327.5690.1|Name=mRNA_Ecto-sp13_S_contig18327.5690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
PPAAGGAPPAAASGQSAAGKSLTFALDKAQRRMVASLRQAFRMADVNGDG
NLDREEVEALLRLNLQGQNLDPTQTEAEVLQFIALLDADGTETLDIDEFT
STMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGFLDAGEILELLKS
SDPLRTHSELDRQVTRYIEAVDVDNDGQLDLEEFIELVQSMREGGVHEGP
LEPKAEEFRSWEVIKPMLEGYKTLPELLAARPPDYSPPGFWELFEAETHA
TKSESAGQLAEAVQ
back to top

mRNA from alignment at Ecto-sp13_S_contig18327:541..2801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18327.5690.1 ID=mRNA_Ecto-sp13_S_contig18327.5690.1|Name=mRNA_Ecto-sp13_S_contig18327.5690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18327:541..2801- (Ectocarpus species13 EcNAP12_S_4_19m)
CCACCCGCCGCTGGCGGAGCCCCCCCCGCCGCCGCAAGCGGCCAGTCTGC CGCCGGGAAGTCGCTGACGTTTGCGCTGGACAAGGCGCAGCGGCGCATGG TGGCCAGTCTCCGGCAGGCGTTCCGCATGGCTGATGTGAACGGGGACGGA AACCTTGACCGCGAAGAGGTGGAAGGTGGGCATGGGTTTGTAGCTGGAAG GCATGTGTGATTGTAGCTGGAAGGCTGAGGGACGGGGGGTGGGGTAGGGA TCGAACTGGAAGGCGTGCATGTATGCAGCGGAAGGTCGACGGGTGGGGGG GCGGGGGGCGGCAGGGATTGGACTGGAGACCCGAGAGCAACATGGAAGTT TTGTTTTTGATTAATGGGATACGGGGCACCGTAAAGTTGCGTGAAAGTTT TGTATGTAGGCACCGCTCACAGGACAGAAACCATACACTGGAAGAGAAAA TTACATCATCAGCTAGGGCGGGTCAGAAATTCCGATCGACGTACTGAGCC AGATCGCGAAACTTGCAACAAATGTTTTGTGTACGATGTCCCTTCGCCCC CCCCACACAGCCTTTATGTACACCCCCTCCCCACTTTGCCTTCCCACTAC CCCTGCCCTCCGACGCCTTTGCCCGGTTCTCAGCGCTCCTAAGGCTCAAT CTTCAGGGCCAGAACCTGGACCCCACGCAGACCGAGGCGGAAGTGCTCCA GTTCATTGCGTGAGTAGAGTACGCATACACTTGAGAGCTGTTGTCGATGT CATCGTTGTTGTTCCGTCGCTGTTGTCGATGTCGTTGTTGTTTTCGCTGT CGATGTCGTCGTCTTCCCCTGAAACCACCGCCGTCGCGTCCTCTCAAACA CCACCGCGTTCCAATCCACCCATCCACCGACGACGACCCCGAAACCGCCA GACTTTTGGACGCAGACGGCACAGAGACCCTGGACATCGACGAGTTCACG AGCACCATGATGCGGTTGATGACGGACGGCCCCGACGAGGTCACCCTCGC GCGGGCCCGGCGGCAGGCCCTGACGAAGGCCTTCGACGAGGCCGACACCG ACGGGTCCGGCTTCCTCGACGCCGGCGAGATCTTGGAGCTCCTCAAGAGC TCGGACCCCCTCCGCACTCATTCGGAGTTGGACAGACAGGTACGCGTCCG TCTGGCCGGTACGGGTGTGAGGAGGTACTGAGAACAGACCGGAACCGTTT TGGATGTGAAGAACGTGACAACTTCAGAGGGGTGCGATGTCGGTTGAGCA GCAAGGCAGGTTACCCTTAGCGCACCGCCCCGGTCCCATCCGTCCGCGCA CTTACATACGCCTTCTGTGCTTTTGTGCGAGCAACGGGTCATGAGCAATC TGATTGCCATGCTGACGAAAATCACCCCGCGCGCATCACCGAGTTTTGCT TTGTCGATGGCCTTGGTGCCTCTTCGTGGACCGTTTCAACAACAGCGAAC CATGGTACCCTCTCCTCCAACGCACAATGTCTTTGACCGAATGTCCTCCC CCCTTGGTTTCCACTTTGTGTGTGTGTTGCCCGTGGCGGCATAGGTGACT CGTTACATCGAGGCCGTCGACGTGGACAACGACGGCCAGCTGGACCTGGA GGAGTTCATAGAGCTTGTTCAGAGCATGCGCGAGGGGGGTGTTCACGAGG GGCCTCTCGAGCCCAAGGTGAGCGTTCTAGCGTCCAGTCTGCGTTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGTGGTGTTGTTGTTTG TTGTTGTTGCTATTGGGATGGGACCTGGTCCCCCTCCGTGCCACGTTCCT CTACCAGTGGTCGCTTAACGCTCCTGTCCTCGCCGACAAATACAGCAGTA CTGCTCGCACGTGTGGCGCTCCCTGTGCCTGTCTCTGTTTCGAAGTCTCT CCCTGGTCAACCCGCCGTTGTTCACACGTGGCGCTGAGAGGGTTTGCTTC GTTGTAGGCTTGGAATCTTGTCTATATTCACTCAGGGCAGGAAAAACAAG GCTCAGACGGCGATGATTGTTGGCATCCTCACCCCCGCCCACCCCCCCGG CTTTCCCCTTCTCATCCTCCGACGCACCAGGCCGAGGAGTTTCGATCCTG GGAAGTCATCAAACCGATGCTTGAAGGTTACAAGACCCTACCCGAGCTCC TAGCTGCGCGCCCGCCGGACTACTCCCCCCCCGGATTCTGGGAGCTGTTT GAGGCCGAGACCCACGCCACGAAGAGCGAATCAGCCGGACAGCTCGCGGA AGCTGTGCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18327:541..2801-

>mRNA_Ecto-sp13_S_contig18327.5690.1 ID=mRNA_Ecto-sp13_S_contig18327.5690.1|Name=mRNA_Ecto-sp13_S_contig18327.5690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18327:541..2801- (Ectocarpus species13 EcNAP12_S_4_19m)
CCACCCGCCGCTGGCGGAGCCCCCCCCGCCGCCGCAAGCGGCCAGTCTGC
CGCCGGGAAGTCGCTGACGTTTGCGCTGGACAAGGCGCAGCGGCGCATGG
TGGCCAGTCTCCGGCAGGCGTTCCGCATGGCTGATGTGAACGGGGACGGA
AACCTTGACCGCGAAGAGGTGGAAGCGCTCCTAAGGCTCAATCTTCAGGG
CCAGAACCTGGACCCCACGCAGACCGAGGCGGAAGTGCTCCAGTTCATTG
CACTTTTGGACGCAGACGGCACAGAGACCCTGGACATCGACGAGTTCACG
AGCACCATGATGCGGTTGATGACGGACGGCCCCGACGAGGTCACCCTCGC
GCGGGCCCGGCGGCAGGCCCTGACGAAGGCCTTCGACGAGGCCGACACCG
ACGGGTCCGGCTTCCTCGACGCCGGCGAGATCTTGGAGCTCCTCAAGAGC
TCGGACCCCCTCCGCACTCATTCGGAGTTGGACAGACAGGTGACTCGTTA
CATCGAGGCCGTCGACGTGGACAACGACGGCCAGCTGGACCTGGAGGAGT
TCATAGAGCTTGTTCAGAGCATGCGCGAGGGGGGTGTTCACGAGGGGCCT
CTCGAGCCCAAGGCCGAGGAGTTTCGATCCTGGGAAGTCATCAAACCGAT
GCTTGAAGGTTACAAGACCCTACCCGAGCTCCTAGCTGCGCGCCCGCCGG
ACTACTCCCCCCCCGGATTCTGGGAGCTGTTTGAGGCCGAGACCCACGCC
ACGAAGAGCGAATCAGCCGGACAGCTCGCGGAAGCTGTGCAG
back to top