mRNA_Ecto-sp13_S_contig18315.5687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: D7G7B1_ECTSI (Sulfotransferase, C-terminal Sulfotransferase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B1_ECTSI) HSP 1 Score: 379 bits (973), Expect = 5.570e-130 Identity = 187/210 (89.05%), Postives = 194/210 (92.38%), Query Frame = 1
Query: 46 IMCAAAATAATLVVTLTVARCGPSTGGAQRQDRFGSGSLGEYRDQGGNSGGGGVASGRTLRGFIKKPPSPPRCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGTIKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWQFKYDRE 675
++CAAAA A LVV L VARCGPSTGGAQRQDR G+GSLGEYRDQGG+SGG VASGRTL GFIKKPP P RCFVL+GEDSSRCHANVYFFGVSKCGTTSLAHWMARHPAL WVSN WHTRHK GGEAHVME+ TIKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRI+DMYGKTSYDGTVKYIAVLREPVARTISSWQFKYD E
Sbjct: 1 MICAAAAAA--LVVALAVARCGPSTGGAQRQDRSGNGSLGEYRDQGGSSGGVAVASGRTLHGFIKKPPPPARCFVLEGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALSWVSNVWHTRHKQGGEAHVMEMSTIKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIRDMYGKTSYDGTVKYIAVLREPVARTISSWQFKYDLE 208
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: A0A6H5JZE4_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE4_9PHAE) HSP 1 Score: 346 bits (887), Expect = 1.950e-115 Identity = 179/225 (79.56%), Postives = 187/225 (83.11%), Query Frame = 1
Query: 1 SRGDRTETWASRRVVIMCAAAATAATLVVTLTVARCGP-STGGAQRQDRFGSGSLGEYRDQGGNSGGGGVASGR-TLRGFIKKPPSPPRCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGTIKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWQFKYD 669
S GDRTETWASRR V LVVTLTVA CGP STGGAQRQDRFG+GSLGEYRDQGGNS TLRGF RCFVL+GEDSSRCHANVYFFGVSKCGTTSLAHWMARHPAL+WVSNT HT+HK GGEAHVME+ TIK++ESTYALTAPM AQTD VIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSW+FKYD
Sbjct: 22 SGGDRTETWASRRAVXXXXXXXXXXXLVVTLTVAYCGPRSTGGAQRQDRFGNGSLGEYRDQGGNSXXXXXXXXXXTLRGFXXXXXXXXRCFVLEGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALQWVSNTCHTQHKQGGEAHVMEMSTIKNSESTYALTAPMTAQTDKVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWEFKYD 246
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: D8LLL8_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL8_ECTSI) HSP 1 Score: 119 bits (298), Expect = 1.090e-27 Identity = 66/147 (44.90%), Postives = 83/147 (56.46%), Query Frame = 1
Query: 259 RCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTW--HTRHKDG-GEAHVMELGTIKD-------NESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWQFKYD 669
RCFV E RC+ V+FFG SKCGTTSLA W+ HPA WV+N H + G EAHV + D + +T P + D VIDYTPHY +AE P+RI D+YG + +K+I LREP R ISSW+FK +
Sbjct: 158 RCFV-GAEGDHRCYPTVFFFGTSKCGTTSLARWLDHHPATHWVANPRRPHQIEETGVKEAHVFDDPPKGDPAFEEGMHHEKLFITTPKSGAEDVVIDYTPHYIAVAETPHRIADIYG--GRESGLKFIVTLREPAGRAISSWEFKNE 301
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: A0A6H5L1A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A9_9PHAE) HSP 1 Score: 113 bits (283), Expect = 7.360e-26 Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 1
Query: 172 RDQGGNSGGGGVASGRTLRGFIKKPPS----PPRCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGT-----IKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMY---GKTSYDGTVKYIAVLREPVARTISSWQFKYDREY 678
R++G GGGG G L + RC+ D + RC V+FFGVSKCGTTSL++W++ HP +V D EAHV + + D +L+ P+A+ DTVID+TP+Y+I+ E P RI D Y G ++++ VLREPVARTISSWQ+K +RE+
Sbjct: 211 REKGVRDGGGGXGEGELLSSEELADETLADGKARCWT-DEAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPP---EAHDYREAHVFDNTPRYWHGVSDRGKRESLS-PVASSRDTVIDFTPNYAIVGEAPLRIYDYYHQAGGGRLRSNLRFLVVLREPVARTISSWQYKSEREH 386
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: D7FHD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD4_ECTSI) HSP 1 Score: 106 bits (265), Expect = 6.970e-23 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 1
Query: 259 RCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGT-----IKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMY---GKTSYDGTVKYIAVLREPVARTISSWQFKYD 669
RC+ D + RC V+FFGVSKCGTTSL++W++ HP +V D EAHV + + D +L+ PMA+ DTVID+TP+Y+I+ E P RI D Y G ++++ VLREPVARTISSW++K +
Sbjct: 246 RCWT-DEAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPP---EAHDYREAHVFDNTPKYWHGVSDRGKRESLS-PMASWRDTVIDFTPNYAIVGEAPLRIYDYYHQAGGGRLRSNLRFLVVLREPVARTISSWEYKSE 385
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: A0A835YNP6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP6_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 7.360e-21 Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query: 289 SRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGTIKDNESTYALTAPMAAQ-TDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWQFK 663
+RC NV FFGVSK GTTSLAHW+++HP ++++ + ++ T+ D AP A +D V+DYTPHY+++ EVPYRI + +S K+I +LREP R ISSW+FK
Sbjct: 4 TRCLPNVVFFGVSKAGTTSLAHWLSQHPQVKFMGG------RPSESRAYLKGRTLADIRERSKRLAPSADPVSDVVVDYTPHYAMVPEVPYRICHLLDCSS----TKFIVLLREPAERAISSWRFK 119
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: A0A8J2SXJ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXJ9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.140e-6 Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1
Query: 310 YFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGTIKDNESTYALTAPMAAQTD--------TVIDYTPHYSILAE-VPYRIKDMYGKTSYDGTV--KYIAVLREPVARTISSWQFK 663
+F G SKC T+S+A +ARHPA+ T H GEAHV + ++ AL + A+ ++YTP Y A VP + T+ +++ LREPVAR +SSWQFK
Sbjct: 25 FFIGSSKCATSSIAAALARHPAI-----TSHAGQGGQGEAHVFDGDHRAHVKNAKALLRRLQAKLRKNPKPGALASMEYTPEYLFEANHVPACLCGALQLTAAARCANRRFLVTLREPVARAVSSWQFK 148 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18315.5687.1 >prot_Ecto-sp13_S_contig18315.5687.1 ID=prot_Ecto-sp13_S_contig18315.5687.1|Name=mRNA_Ecto-sp13_S_contig18315.5687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp SRGDRTETWASRRVVIMCAAAATAATLVVTLTVARCGPSTGGAQRQDRFGback to top mRNA from alignment at Ecto-sp13_S_contig18315:1942..3102+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18315.5687.1 ID=mRNA_Ecto-sp13_S_contig18315.5687.1|Name=mRNA_Ecto-sp13_S_contig18315.5687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18315:1942..3102+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18315:1942..3102+ >mRNA_Ecto-sp13_S_contig18315.5687.1 ID=mRNA_Ecto-sp13_S_contig18315.5687.1|Name=mRNA_Ecto-sp13_S_contig18315.5687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18315:1942..3102+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |