mRNA_Ecto-sp13_S_contig18175.5620.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18175.5620.1
Unique NamemRNA_Ecto-sp13_S_contig18175.5620.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18175.5620.1 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 7.090e-72
Identity = 111/115 (96.52%), Postives = 114/115 (99.13%), Query Frame = 1 
Query:   79 MKFLGFFAVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENAQAVVVPLFFLVSINLLFNNWAKDQPDGDFFAEYDERR 423
            MKFLGFF VCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFEN+QAV+VPLFFLVSINLLFNNWAKDQP+GDFFAEYDERR
Sbjct:    1 MKFLGFFVVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115
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BLAST of mRNA_Ecto-sp13_S_contig18175.5620.1 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-18
Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:  100 AVCLTAV-SGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENAQAVVVPLFFLVSINLLFNNWAKDQPDGDFFAEYDERR 423
            A+C+ A  S FVAP  P    A     +A P + G    V       S A+L+AAPALATEGT E LG +N  A  VPL  + +INL+F  WA+ QP+G+FF EYDERR
Sbjct:    8 ALCMVAAASAFVAPAAPTAIRATTTVMSAAP-KAGAIATV-------SAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108
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BLAST of mRNA_Ecto-sp13_S_contig18175.5620.1 vs. uniprot
Match: A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.600e-17
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:  103 VCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENAQAVVVPLFFLVSINLLFNNWAKDQPDGDFFAEYDERR 423
            V     + FVAP  P + AA       T M M     V  +A A S A+LT+AP LATEGT E  G ++     +PL  +V INL+F  WA+ QP+G+FF EYDERR
Sbjct:   13 VAAMGANAFVAPAAPTMRAA-------TVMSMSAAPKVGAIATA-SAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 111
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BLAST of mRNA_Ecto-sp13_S_contig18175.5620.1 vs. uniprot
Match: A0A0G4F681_VITBC (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4F681_VITBC)

HSP 1 Score: 66.6 bits (161), Expect = 2.310e-11
Identity = 48/118 (40.68%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:  100 AVCLTAV------SGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAV---LTAAPALATEGTGEPLGFENAQAVVVPLFFLVSINLLFNNWAKDQPD--GDFFAEYDER 420
            A+CL A       S    PT P L  A R   A +P+RM  + D       A++AV   L    ALATEGTGEPLG ++   ++      +S+ +LF NW+K+ PD  GDFF+EYD R
Sbjct:   11 AMCLVAQLAEAMDSAAYVPTNPLLLRARR--QAPSPLRMSAETDKLSKNLGAALAVSPLLAPLAALATEGTGEPLGVDSPLQLLAITAIPLSLGILFINWSKENPDNEGDFFSEYDRR 126
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BLAST of mRNA_Ecto-sp13_S_contig18175.5620.1 vs. uniprot
Match: A0A1X6P1X1_PORUM (PSII 6.1 kDa protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1X1_PORUM)

HSP 1 Score: 55.1 bits (131), Expect = 4.020e-7
Identity = 45/105 (42.86%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  121 SGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANA-ASVAVL--TAAPALATEGTGEPLGFENAQAVVVPLFFLVSINL-LFNNWAKDQPDGDFFAEYDERR 423
            S FVA +   L++  R +  AT  RM +       A A AS+A L  TAAP LATEGTGE LG +NA  + VPL  + ++ L LF  +   Q + DFF   D+RR
Sbjct:    3 SAFVATSPLLLASPRRAAATATAPRMAVAPVXXXXAQASASLAALAATAAPVLATEGTGEGLGIDNAL-LYVPLLGIPAVFLFLFLQFGSSQDNEDFFGTIDDRR 106
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BLAST of mRNA_Ecto-sp13_S_contig18175.5620.1 vs. uniprot
Match: L1JFS1_GUITC (Uncharacterized protein n=4 Tax=Guillardia theta TaxID=55529 RepID=L1JFS1_GUITC)

HSP 1 Score: 51.6 bits (122), Expect = 1.040e-5
Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:  109 LTAVSGFVAP--TGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENAQA----VVVPLFFLVSINLLFNNWAKDQPDGDFFAEYDERR 423
            + A + F AP   G RL +A    +      + + E V+K    A      AAPA A EGTGE LG ++ +     +VVPLF    + LLF  +A +Q + DFF  YD+RR
Sbjct:   11 VAAAAAFTAPHSAGLRLRSATPAMSMKADSNIRIPEGVKKALAPAIAFAGAAAPAFA-EGTGEALGVDDGKLLIPIIVVPLF----VFLLFQGFAANQDNEDFFDTYDQRR 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18175.5620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2S2_ECTSI7.090e-7296.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z064_9STRA1.310e-1847.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAY3_9STRA1.600e-1744.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4F681_VITBC2.310e-1140.68Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A1X6P1X1_PORUM4.020e-742.86PSII 6.1 kDa protein n=1 Tax=Porphyra umbilicalis ... [more]
L1JFS1_GUITC1.040e-536.94Uncharacterized protein n=4 Tax=Guillardia theta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18175contigEcto-sp13_S_contig18175:790..3317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size427
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003300.1
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.2341232-CDS-Ecto-sp13_S_contig18175:789..8311681462938.2341232-CDS-Ecto-sp13_S_contig18175:789..831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18175 790..831 -
1681462938.244545-CDS-Ecto-sp13_S_contig18175:2138..22311681462938.244545-CDS-Ecto-sp13_S_contig18175:2138..2231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18175 2139..2231 -
1681462938.2547154-CDS-Ecto-sp13_S_contig18175:3026..33171681462938.2547154-CDS-Ecto-sp13_S_contig18175:3026..3317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18175 3027..3317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18175.5620.1prot_Ecto-sp13_S_contig18175.5620.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18175 790..3317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18175.5620.1

>prot_Ecto-sp13_S_contig18175.5620.1 ID=prot_Ecto-sp13_S_contig18175.5620.1|Name=mRNA_Ecto-sp13_S_contig18175.5620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
DRSLFPLSPLLIAPVSPVTRQPFTATMKFLGFFAVCLTAVSGFVAPTGPR
LSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLG
FENAQAVVVPLFFLVSINLLFNNWAKDQPDGDFFAEYDERR*
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mRNA from alignment at Ecto-sp13_S_contig18175:790..3317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18175.5620.1 ID=mRNA_Ecto-sp13_S_contig18175.5620.1|Name=mRNA_Ecto-sp13_S_contig18175.5620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18175:790..3317- (Ectocarpus species13 EcNAP12_S_4_19m)
GATCGATCTCTGTTTCCCCTCTCACCCTTGTTGATAGCACCCGTATCACC
CGTAACACGACAACCCTTCACAGCTACAATGAAGTTCCTTGGATTCTTCG
CGGTGTGCCTCACGGCAGTATCAGGATTCGTTGCGCCCACCGGCCCCCGC
CTCTCGGCCGCCGTGCGTCCCTCGACCGCTGCCACACCCATGCGCATGGG
CCTCAAGGAAGACGTACAGAAGGTCGCCAACGCGGCATCGGTCGCGGTGC
TCACCGCCGCGCCTGCCTTGGCCACTGAAGGGACTGGCGAGGTAAGTGGT
CCGTAGTGTTGCCTCTTAGGAGAGAGGAAAGCGAAAATGATCGAACTGAA
TATGTCGTGTTCATGCGGTGGGTGGGTGAGTCAACAGGACCAGAGGTCGG
CTTGAAGCTCGTTCTCCAAAAACTCGCGAAACTCGTCAGGTTCTTCATTG
ATTCGGGGGTCGGCGTGTGTGCTGGTTGGTGGGCCACCAGCACCGGGCAG
GCGCCCTGGAGTTTGATTCACCGTCGAATTGAAATGCGCCTCAAGCAGCG
GTTCACGTGTCGATTCACCTTGTCTGCCCGGCATTCCGTTGTGCTGACAA
GTACTTCAATTTAGAGGGGGCATGGGAGAGCATGTTTTCACCCCAAACCG
CAGAAAATGACACGATTTTCATGTCTCTGATGCACGTAGTTTTCAACATT
GTATACATTAGAGTATGCATATTGTAGCTGGAAGCATTGAAGGAGTGACG
CTTGTTGGCCTGCCGCTAGTGTCGCCATTCCACACATGAAGATGTGTCCG
GGAGCGTGTCGGTCGCATATGACGTGTATTTGGTCTGGTGGACAAATGCC
TTCTGCAGAAACGCCTGTTGCCTGAGCCTTCCGCCGGAGGCCCGTCACAG
TTTACTGCTACACACCTTAACTGCACCCGTCCGTGCCTCTTCCATCATCT
GTAGTGTTCTTGACCCTCCCCTCCCCCCCACGCGCCCTCCCCTGTGTCCG
GTGTGTCATGCTTCCCACCTGATGCTGCCTGCTGTTTTGGCGGGGCGACG
GTTGACTCGTACACAAAAACCAATCTCTGTCTTCAGCCGCTCGGGTTTGA
GAACGCGCAGGCTGTGGTCGTTCCGCTGTTCTTCCTCGTTAGCATCAACC
TGCTCTTCAACAACTGGGCAAAGGACCAGGTGAGGAATCTAGATACTGTC
TAGGGGGAAGCGGTGCTATGCGGCTCATAGGGTGTATGTACAACAAAGGA
GTTCACCTGCTGTTTTTATGCGCGGTGCGCAGGGGAGAGATGAAGCGGCA
ACCAAAAATTGGTCCCATGTTGACTTTTCAAGTCCGTTGCAGACAACCGC
AGAGGCGCACGCACTCATTGCACTATCCGGAGTTTATGTGGCCGTCATTT
TGATGGTGGGGTAGAATACACAGCAGTGGTTTGTGTGTCTGTCTCAGGTA
CGAGAGCTGCCTGCTTGTTCTCCAAGTGCGTACAAAATCCCGCGACCCTC
GTGTAAGCTACTACATCATTGCCGGCGTACCTTGCACATGATACTGCAAT
CACACATTCGAAGAAGTATGGGGTATCGCTGACGCAGCTAAGCGAGCATC
CATGACATTCCGAATACATGTAGGCTCGCCTGTCTTTTATCCCGCCTTGA
GATCCCTCTGCTTGTACGCGCGAGGCAAGTGCTTCATGTGGCAACATGTT
ACTGCTGATGGAGGGCGCGTCGGGTACCGTAAAAGTGTGCACAAACCGAA
ATGCTAAGCATCTACTGCTGTTCTGTGAGGGTTTTTTATGTCATTAGTCT
TCGTCTTGCACTGAGCTTCTCTCAACGTGAAAATGGTCCTGAGGAAAGGC
TACATACAGTTTTCTCGTAAGAACACGGTTCTTCAGCTAGGGTCTTTGTC
GACGCCGTTCAAACAAGACCCTACCAAGTACAATCGCGTTAAACCAAGGC
TTCTCCTCACACTCAGTTCTTGTTAGCTCAAAGAAAGGTCTCAAAAACGT
TTGTGTGGGTTCACCCTTGGTGCGCCAAGCGGGTTAACATCTGTTTTATT
GTCCGAGTATATACGCACCTTGTAAATCACAGTTTGTGTCTGGGGCGTAC
TGCTTTCCCCGCAGTTTGTCTTTTGAGTCACCCCTTCAACTCTCGTCGCT
GTGCACTAAAGCACAGCGCTAAGTGCCGCCGAGGTCCCAGAGCACTTGCG
GAAGACCCCCAAGTTACCCTTTGCGTATGAGTCCGCCACAGCGTCAAAAG
CCATCTTGGTTGGAATAGACGTCTTGCCTTGTGTATGCATCAAGCCATGC
TGTCGAGCGAACGCCGGGTTACTGCACAACCGGAGTTTTTGCGCAGCTTT
CTCACAAACTGCAAACAGCACGATGTCATTCCAACCGCACTACCCGCAAA
ACGCCACCAGTCACTTGTCCCGACAGTTCCCCGCGTCTTATCATCATTTT
GTTTTTCCATCTATGCTGTTTGTTGCCTCTTTGCAGCCGGACGGTGACTT
CTTCGCCGAATACGACGAGAGGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18175:790..3317-

>mRNA_Ecto-sp13_S_contig18175.5620.1 ID=mRNA_Ecto-sp13_S_contig18175.5620.1|Name=mRNA_Ecto-sp13_S_contig18175.5620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18175:790..3317- (Ectocarpus species13 EcNAP12_S_4_19m)
GATCGATCTCTGTTTCCCCTCTCACCCTTGTTGATAGCACCCGTATCACC
CGTAACACGACAACCCTTCACAGCTACAATGAAGTTCCTTGGATTCTTCG
CGGTGTGCCTCACGGCAGTATCAGGATTCGTTGCGCCCACCGGCCCCCGC
CTCTCGGCCGCCGTGCGTCCCTCGACCGCTGCCACACCCATGCGCATGGG
CCTCAAGGAAGACGTACAGAAGGTCGCCAACGCGGCATCGGTCGCGGTGC
TCACCGCCGCGCCTGCCTTGGCCACTGAAGGGACTGGCGAGCCGCTCGGG
TTTGAGAACGCGCAGGCTGTGGTCGTTCCGCTGTTCTTCCTCGTTAGCAT
CAACCTGCTCTTCAACAACTGGGCAAAGGACCAGCCGGACGGTGACTTCT
TCGCCGAATACGACGAGAGGAGGTAA
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