mRNA_Ecto-sp13_S_contig18148.5601.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18148.5601.1
Unique NamemRNA_Ecto-sp13_S_contig18148.5601.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18148.5601.1 vs. uniprot
Match: D7FXK0_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXK0_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 1.550e-65
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 3 
Query:   33 MVGPDWRVGAWTFVSIPAGTVGWGCLIIFGAPDDGADMLRTIIVAIGRGLALVTMAFYLSTACTDPGIVFKHAATPVRGTAAAGHGPRGSGGRSALLALSAGAGTPVP 356
            MVGPDWRVGAWTFVSIPAGTVGWGCLIIFGAPDDG DMLRTIIVAIG GLALVTMAFYLSTACTDPGIVFKH ATPVRGT AAGHGPRGSGGRSALLALSAGAGTPVP
Sbjct:    1 MVGPDWRVGAWTFVSIPAGTVGWGCLIIFGAPDDGGDMLRTIIVAIGGGLALVTMAFYLSTACTDPGIVFKHTATPVRGTPAAGHGPRGSGGRSALLALSAGAGTPVP 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18148.5601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXK0_ECTSI1.550e-6596.30Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18148contigEcto-sp13_S_contig18148:1258..2557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score210.3
Seed ortholog evalue4.5e-52
Seed eggNOG ortholog2880.D7FXK0
Model size360
KEGG koko:K16675
KEGG Pathwayko04391,map04391
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-28_001990.1
EC2.3.1.225
Cds size327
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.665513-UTR-Ecto-sp13_S_contig18148:1257..12891681462936.665513-UTR-Ecto-sp13_S_contig18148:1257..1289Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18148 1258..1289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.6755323-CDS-Ecto-sp13_S_contig18148:1289..13441681462936.6755323-CDS-Ecto-sp13_S_contig18148:1289..1344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18148 1290..1344 +
1681462936.6848722-CDS-Ecto-sp13_S_contig18148:2031..22671681462936.6848722-CDS-Ecto-sp13_S_contig18148:2031..2267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18148 2032..2267 +
1681462936.6927125-CDS-Ecto-sp13_S_contig18148:2521..25571681462936.6927125-CDS-Ecto-sp13_S_contig18148:2521..2557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18148 2522..2557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18148.5601.1prot_Ecto-sp13_S_contig18148.5601.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18148 1290..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18148.5601.1

>prot_Ecto-sp13_S_contig18148.5601.1 ID=prot_Ecto-sp13_S_contig18148.5601.1|Name=mRNA_Ecto-sp13_S_contig18148.5601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MVGPDWRVGAWTFVSIPAGTVGWGCLIIFGAPDDGADMLRTIIVAIGRGL
ALVTMAFYLSTACTDPGIVFKHAATPVRGTAAAGHGPRGSGGRSALLALS
AGAGTPVPS
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mRNA from alignment at Ecto-sp13_S_contig18148:1258..2557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18148.5601.1 ID=mRNA_Ecto-sp13_S_contig18148.5601.1|Name=mRNA_Ecto-sp13_S_contig18148.5601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18148:1258..2557+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTCCCCGCAGCCGCTTTCCTCTTCAGGGCATGGTGGGACCCGATTGG
CGAGTCGGCGCGTGGACATTCGTCTCGATTCCGGCAGGTGGGTCGGAATG
TATATGTGCGTGCACTGCAACAAGTAGTACTTTTTTACTTTTTTTTTTCC
ACGTAGGATATTTGGGACTTTTTTTTTAACCTTTGCGCATCTCGCACCAA
ACCAAGGGAGCAACAACGTTCCGGCATCTCGGATTAACGTGGCGGTGGCA
AGCTCTAGCGGTGGTAGTGCCCTTGGGATTGAGCCTATTGTGGCGGTTAA
ACCGGGTCTGCCCTATTCTACGGACACGGATACACCGTAACGGCGGGAGA
GGAAGATACTCCGAACAGGGAAAAATGAAGTTTCTCATCCTTCCCGTAGC
CCGCCGGGGTCAGGGTGCGGGTGCTACTCGCGTTGCGATGTCCATTGTTT
TCTGGTTTCGTATTAGGTGTTCGATTTTTTGTCCTCTTGTGTGTATGCAA
CAGGCATCGCCAAGAGGAGCATTCTGTGTGGCCTTCCTCCTGCGCGACCG
CGGGTTCTGCGTCCAGAAAACATACTTGACACCGAAAGGCGTAAAAACTG
AAGCCTATGATAGGTGGAGCGGAACTCGCACACGAACACGGAGAGGGACC
AATCCACGATGCGTCAAAAATCAGCCTGTTCAATACGTCTGTCACTCTAG
TGCATCAGAGCGTGGCCTTCCATGTCAATCTACCCTTTTTAACATACCTC
CAACCGGTGGGTTGACAACATCAGGCACCGTCGGGTGGGGGTGTCTGATT
ATTTTCGGAGCGCCAGACGACGGTGCGGACATGCTCCGGACCATCATCGT
CGCCATCGGCAGAGGCTTAGCCCTGGTGACCATGGCGTTTTACCTGAGCA
CCGCCTGCACCGACCCTGGCATCGTCTTCAAGCACGCGGCCACCCCGGTT
AGAGGGACCGCGGCTGCCGGACATGGACCGAGGGGTAGCGGTGGCAGAAG
CGCACTCTTGGTGAGTGGACGCGCTTGCTGCGGCTGGCTGGTGGTGTGCA
CCCTTTTCGCGATATTTTTGTCGAGGTCCTCGGCTCTGGCGTAGCTTCGA
CTGGCGGGGTTCACAATCTTCATCGCCTCGGGGGGGGAGGGGGCACACGG
TGAGAAAGGAGCGCTATGGTATGGCTCATGAGCTCGCGCCCGCACACACA
TATCCGAACGGAGATTTAGCGTCCCCGCCCCTCCGTAATTTGGTCGTGTG
CGTGCGGTACACAGGCGTTGTCGGCTGGCGCTGGCACCCCAGTGCCTAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18148:1258..2557+

>mRNA_Ecto-sp13_S_contig18148.5601.1 ID=mRNA_Ecto-sp13_S_contig18148.5601.1|Name=mRNA_Ecto-sp13_S_contig18148.5601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18148:1258..2557+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGACCCGATTGGCGAGTCGGCGCGTGGACATTCGTCTCGATTCC
GGCAGGCACCGTCGGGTGGGGGTGTCTGATTATTTTCGGAGCGCCAGACG
ACGGTGCGGACATGCTCCGGACCATCATCGTCGCCATCGGCAGAGGCTTA
GCCCTGGTGACCATGGCGTTTTACCTGAGCACCGCCTGCACCGACCCTGG
CATCGTCTTCAAGCACGCGGCCACCCCGGTTAGAGGGACCGCGGCTGCCG
GACATGGACCGAGGGGTAGCGGTGGCAGAAGCGCACTCTTGGCGTTGTCG
GCTGGCGCTGGCACCCCAGTGCCTAGT
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